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* [svn-r6439] Purpose:Quincey Koziol2003-02-261-1/+8
| | | | | | | | | | | | | | | | Bug fix w/gcc 2.95.x where x<3 Description: -O3 optimization level causes problems for gcc 2.95.2 on eirene Solution: Only enable -O3 if using gcc 2.95.x (where x>=3) or gcc 3 Otherwise, use older setting of -O2 -finline-functions Platforms tested: FreeBSD 4.7 (sleipnir) Linux 2.2 (eirene)
* [svn-r6437] Description:Albert Cheng2003-02-251-1/+1
| | | | | | | | | so_locations was not removed during distclean. Added it to the distclean targets. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)}? No [If no, why not?] Tested in modi4 and eirene with C++ enabled..
* [svn-r6436] Purpose:Quincey Koziol2003-02-248-20/+2107
| | | | | | | | | | | | | New internal feature Description: Add internal API for building and working with heaps (H5HP). This will be used for the LRU algorithm in the new metadata cache code. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir)
* [svn-r6435] Purpose:Quincey Koziol2003-02-241-2/+3
| | | | | | | | | | | | Code cleanup Description: Added more information to information printed for test failure. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)}
* [svn-r6434] Purpose:Quincey Koziol2003-02-241-9/+15
| | | | | | | | | | | | | | Code cleanup Description: Removed extraneous __FUNCTION__ declaration that was causing warnings on Windows. Updated copyright information. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)}
* [svn-r6433] Purpose:Quincey Koziol2003-02-246-100/+194
| | | | | | | | | | | | | | | Code/comment cleanup Description: Made more information about reference-counted strings private to the H5RS package by trimming the typedef used in H5RSprivate.h and switching from using macros for a couple of operations to using functions. Updated copyright information for a few of these files. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)}
* [svn-r6431] Purpose:Quincey Koziol2003-02-242-12/+0
| | | | | | | Comment cleanup Description: Corrected comment information.
* [svn-r6430] Purpose:Quincey Koziol2003-02-247-50/+103
| | | | | | | Code cleanup (sorta) Description: Updated to new copyright information as I browsed these files.
* [svn-r6429] Purpose:Pedro Vicente Nunes2003-02-241-169/+151
| | | | | | | removed -d , -g , -t and -v options and renamed -m to -d and -v to -l added output for objects that are not in one file but in the other Platforms tested: windows, linux
* [svn-r6428] Purpose:Bill Wendling2003-02-222-1/+1
| | | | | | | | | | Bug Fix Description: Private header file was included in a public header file by mistake. Solution: Put the private header file into the .c module instead. Platforms tested: Linux 2.4 (see, I really did test it).
* [svn-r6427] Purpose:Bill Wendling2003-02-212-5/+10
| | | | | | | | | | | Update Description: Changed the H5FPinit() function to accept pointers to what the SAP Comm and SAP Barrier Comm should be assigned to. This is the first step in hopefully getting rid of the global versions of them altogether (but we'll see). Platforms tested: Linux
* [svn-r6426] Purpose:Bill Wendling2003-02-216-113/+209
| | | | | | | | | | | | Update Description: Final support addition for FPHDF5. Wherever there was an equivalent MPIO or MPIO/POSIX call/check, I placed an FPHDF5 call/check there as well, with the appropriate #ifdefs in place. The hdf5.h is updated with the H5FDfphdf5.h driver #include. Platforms tested: Linux & Modi4
* [svn-r6425] Purpose:Bill Wendling2003-02-213-390/+723
| | | | | | | | | | | | | | | | Update Description: Big change to the H5FD.c module: - Split apart H5FD_alloc and H5FD_free. H5FD_alloc was huge and H5FD_free had a freeing of the freelist part which I needed to call from the SAP. - Added support for FPHDF5. If it's a client, then it sends the allocation or free request to the SAP. The SAP will call the same code, but it'll actually do the allocation/freeing in that case. Platforms tested: Linux & Modi4
* [svn-r6424] Purpose:Bill Wendling2003-02-212-17/+127
| | | | | | | | Update Description: Added support for allocating and freeing space in the file. Platforms tested: Linux & Modi4
* [svn-r6423] Purpose:Bill Wendling2003-02-216-29/+293
| | | | | | | | | Update Description: Added support for the allocation and freeing of space in the file. This information is kept on the Server. Platforms tested: Linux & Modi4
* [svn-r6421] Raymond Lu2003-02-191-16/+6
| | | | | | | | | Purpose: test program modification Description: put part of code into an internal function. Nothing serious. Platforms tested: eirene
* [svn-r6419] Raymond Lu2003-02-183-2/+169
| | | | | | | | | | | | Purpose: More test. Description: Test independent read of groups and chunked dataset. Solution: This test is similar to multiple group test. So just add it in the testphdf5.c,h. Platforms tested: modi4, eirene.
* [svn-r6416] MuQun Yang2003-02-182-0/+0
| | | | | | | | | | | | | | Purpose: windows project updating Description: To reflect Qunicey and Ray's changes (add/remove files and filters) Solution: Platforms tested: windows 2000 Misc. update: Update MANIFEST if you add or remove any file. Update release_docs/RELEASE for bug fixes, new features, etc. Update applicable document files too.
* [svn-r6415] Purpose:Quincey Koziol2003-02-185-28/+58
| | | | | | | | | | | | | Code cleanup Description: Changed hard-coded magic number (32) for the maximum number of filters in a filter pipeline to use a symbolic constant (H5Z_MAX_NFILTERS) instead. This limit could (and probably should) be removed to allow an unlimited number of filters in a pipeline. Platforms tested: FreeBSD 4.7 (sleipnir)
* [svn-r6414] Purpose:Albert Cheng2003-02-181-3/+12
| | | | | | | | | | | | Bug fix (no id, just noticed myself) Description: Added a barrier before doing file cleanup to ensure all tests are completed by then. Moved the MPI_Finalize to be very end and insert an H5close before it to ensure all potential MPI activities by HDF5 are done by then. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)}? Yes.
* [svn-r6413] Purpose:Albert Cheng2003-02-171-19/+40
| | | | | | | | | | | | bug fix, features. Description: removed the cache of sizeof_long since it varies between 32 and 64 bits. Set xlc and mpcc_r as the default compiler for serial and parallel modes. Added -D_LARGE_FILES by default to support large file size. Added gcc gnu-flags when gcc compiler is used (not working yet.) Platforms tested: Tested in Copper only since that is the only AIX machine on site.
* [svn-r6412] Purpose:Quincey Koziol2003-02-1716-462/+1400
| | | | | | | | | | Code cleanup Description: Update dependencies and clean up a few warnings. Platforms tested: Linux 2.2 (eirene) w/parallel
* [svn-r6411] Purpose:Quincey Koziol2003-02-1748-1712/+1457
| | | | | | | | | | | | | | | | | | | | | | Code cleanup Description: Clean up miscellaneous warnings which have crept into the code. Fix "_POSIX_C_SOURCE not defined" warning on FreeBSD. Adjust gcc compiler flags to be more concise for production mode. Refactor the H5O code so that there is a stronger boundary between code in the H5O package and code in the library which just calls H5O routines. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) serial & parallel and gcc 2.95.4 & gcc 3.2.2 Misc. update: Update MANIFEST if you add or remove any file.
* [svn-r6410] Purpose:Quincey Koziol2003-02-172-14/+24
| | | | | | | | | | Bug fix. Description: Correct compile errors when configured with --enable-debug=all. Platforms tested: FreeBSD 4.7 (sleipnir) serial & parallel
* [svn-r6407] Snapshot version 1.5 release 47HDF Admin2003-02-1510-35/+42
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* [svn-r6406] Purpose:Bill Wendling2003-02-142-115/+68
| | | | | | | | | | | | Update Description: Since metadata doesn't use a "set view" to do I/O, I moved the check for the use_set_view variable down into the "real" write routine. Also added a check for when the server is dumping metadata to the file. in that case, don't write this information to the SAP... Platforms tested: Linux
* [svn-r6404] Purpose:Bill Wendling2003-02-142-3/+12
| | | | | | | | | | | | | | | | Bug Fix (Bug #806) Description: When compiling/installing with the command "make install" (without performing a "make" beforehand) the tools weren't being made. This was because the `install' command in the Makefiles only relied upon public libraries, not private ones (which the one in the tools directory is). Solution: Had the `install' command be dependent upon an "AUX_LIB" macro which includes libraries which are needed but aren't distributed (that is, they're staticly compiled). Platforms tested: Linux
* [svn-r6403] Purpose:Albert Cheng2003-02-141-1/+1
| | | | Updated it with the v1.4 revision.
* [svn-r6402] Purpose:Bill Wendling2003-02-122-393/+236
| | | | | | | | | | | | | | | Update Description: Added the flush function. Modified so that it calls the FPHDF5 code for reading and writing. This involved splitting the write function up into three different parts to avoid lame goto's. There's some code which will copy a data xfer property list and add in there that we're "dumping" the data so that we can recall this layer when the SAP dumps metadata to a process... Platforms tested: Linux
* [svn-r6401] Purpose:Bill Wendling2003-02-123-68/+226
| | | | | | | | | | | | | | | | Update Description: Added a "metadata flush" function which allows the clients to force a dump of the metadata from the SAP. This should be done before closing the file. Modified the information stored on an "open" of the file. The filename is unnecessary, so I got rid of it. More integration with the File Driver code: Passing in a data xfer property list. Platforms tested: Linux
* [svn-r6400] Raymond Lu2003-02-1214-109/+131
| | | | | | | | | | | Purpose: Change feature Description: Switch to Fletcher32 from Adler32 checksum Platforms tested: arabica, eirene, modi4 Misc. update: MANIFEST and RELEASE.txt updated.
* [svn-r6399] Purpose:Bill Wendling2003-02-122-2/+2
| | | | | | | | | | Bug Fix Description: Pesky little thing: H5GOTO_ERROR was returning NULL instead of FAIL. Solution: Changed accordingly Platforms tested: Linux.
* [svn-r6398] Purpose:Quincey Koziol2003-02-1227-57/+62
| | | | | | | | | | Code cleanup Description: Clean up some compiler warnings Platforms tested: FreeBSD 4.7 (sleipnir)
* [svn-r6397] MuQun Yang2003-02-122-0/+0
| | | | | | | | | | | | | Purpose: update windows project files Description: Some new files such H5Tcommit.c is added in. Solution: windows 2000 Misc. update: Update MANIFEST if you add or remove any file. Update release_docs/RELEASE for bug fixes, new features, etc. Update applicable document files too.
* [svn-r6396] Purpose:Bill Wendling2003-02-122-4/+4
| | | | | | | | | | | Bug Fix Description: Some of the error conditions in the H5GOTO_ERROR macros were NULL instead of FAIL. Solution: Changed accordingly. Platforms tested: Linux
* [svn-r6395] Purpose:Quincey Koziol2003-02-1223-4153/+5087
| | | | | | | | | | | | | | | | | | | | | | | Code cleanup. Description: Break up the ~9350 line H5T.c module into smaller pieces, which contain code for a particular feature or support for a datatype class. This should make the "main" H5T code (still in H5T.c) easier to support, as well as removing some of the "minor" routines from the user applications which don't use them (my rough estimates show about 4% reduction (~30K on a FreeBSD machine) in optimized, staticly-linked binaries for very simple programs) Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) Misc. update: Update MANIFEST
* [svn-r6394] Purpose:Quincey Koziol2003-02-121-6/+2
| | | | | | | | | | | | | | Bug fix. Description: Missed adding the dxpl to the 'flush' VFL callback in the stream driver, causing the C++ compiles to fail. Solution: Added the dxpl parameter. Platforms tested: FreeBSD 4.7 (sleipnir) w/CC=g++
* [svn-r6393] Frank Baker2003-02-111-1/+33
| | | | | | | | | | | | Purpose: To bring the H5Z_func_t definition from the old User's Guide into the Reference Manual. Description: Added custom filter function H5Z_func_t definition to the H5Zregister function description. This definition will next be edited to bring it up-to-date. Platforms tested: IE 5
* [svn-r6392] Purpose:Bill Wendling2003-02-103-580/+874
| | | | | | | | | | | | | | | | | | | | | | | | Update Description: Folded in Quincey's changes to the caching stuff. (Stole the code from the H5FDmpio driver). Roughed in some code for doing a read from the SAP. Also roughed in code for doing a write. However, the write requires an OID, which I'm not sure how to pass down into the driver (maybe via the dxpl_id?...but then it has always to be set before calling one of these routines...). Removed some of the global variables which were there because of the FPHDF5 stuff... Removed the H5Ofphdf5.* stuff from the Makefile.in, since I'm pretty sure it's going away and I don't want to waste time updating that module if that's the case...so just don't compile it. Platforms tested: Linux
* [svn-r6391] Purpose:Bill Wendling2003-02-101-3/+0
| | | | | | | | | | Fix Description: The extra field I put in this structure wasn't needed. Solution: Placed it in the file driver's structure instead. Platforms tested: Linux
* [svn-r6390] Purpose:Bill Wendling2003-02-104-76/+105
| | | | | | | | | | | | | | | | Update Description: Removed some obsolete fields - such as the AC_subst_t object ID - which isn't needed. Fixed so that there are fewer global variables. There are still some left, however. Modified the client and server code so that it handles read requests better. There were some flaws in how this was done before (it was calling H5FD_read() instead of just returning the status that it couldn't find the metadata in the cache). Platforms tested: Linux
* [svn-r6389] Purpose:Bill Wendling2003-02-102-14/+22
| | | | | | | | | | | | Update Description: Added Flexible Parallel HDF5 support to the ending message that configure spits out. Reordered a few other of the messages so that they're in alphabetical order. Platforms tested: Linux
* [svn-r6388] Purpose:Quincey Koziol2003-02-106-18/+18
| | | | | | | | | | | | | Update feature Description: Relax collective constraint for API functions which only read metadata from a file. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 w/parallel
* [svn-r6387] Purpose:Quincey Koziol2003-02-1076-2133/+2864
| | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix Description: Metadata cache in parallel I/O can cause hangs in applications which perform independent I/O on chunked datasets, because the metadata cache can attempt to flush out dirty metadata from only a single process, instead of collectively from all processes. Solution: Pass a dataset transfer property list down from every API function which could possibly trigger metadata I/O. Then, split the metadata cache into two sets of entries to allow dirty metadata to be set aside when a hash table collision occurs during independent I/O. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) serial & parallel Misc. update: Updated release_docs/RELEASE
* [svn-r6386] Purpose:Quincey Koziol2003-02-106-5/+108
| | | | | | | | | | | | | | Bug fix Description: The "system scope" for threads isn't supported on all platforms. Solution: Add detection of this feature to the configure script and check for "H5_HAVE_SYSTEM_SCOPE_THREADS" in the appropriate places. Platforms tested: modi4 w/threadsafe
* [svn-r6383] Purpose:Quincey Koziol2003-02-0718-168/+834
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | New feature for developers. Description: Added "function stack" tracing to library. This allows developers (there is no public API) to call H5FS_print within the library and get a listing of the functions traversed to reach that point in the library. Eventually, I may add support for reporting the parameters to each function also... Mainly for debugging parallel I/O programs, but I think it will come in handy in other cases also. The function stack tracking is controlled with a configure switch: --enable-funcstack, which defaults to enabled currently. When we branch for 1.6, we should change the default setting on the branch to be disabled. Also, added a destructor to the thread-specific keys when thread-safety is turned on in the library. Otherwise, they were leaking memory and causing difficult to debug errors in threaded programs (like the test/ttsafe test). Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) w/thread-safety enabled. Misc. update: Updated MANIFEST with new files added (src/H5FS.c & src/H5FDprivate.h) Update release_docs/RELEASE with thread-safety bug fix.
* [svn-r6382] Purpose:Quincey Koziol2003-02-071-0/+2
| | | | Update with missing files.
* [svn-r6381] Purpose:Bill Wendling2003-02-061-0/+3
| | | | | | | | | | | | | Field Addition Description: Added a File ID field to the H5FD_t structure so that, way deep down in the H5FD_* functions, I'll know what ID the SAP wants for this particular file. This is #ifdef'd out so that if you don't have FPHDF5 enabled, then it won't be there... Platforms tested: Linux
* [svn-r6380] Purpose:Bill Wendling2003-02-061-15/+16
| | | | | | | | Update Description: Added support for the H5FDfphdf5.[ch] file driver. Platforms tested: Linux
* [svn-r6379] Purpose:Bill Wendling2003-02-066-100/+1747
| | | | | | | | | | | | | | Update Description: H5FP.c, H5FPclient.c, H5FPprivate.h, H5FPserver.c: Update. More progression towards the SAP as metadata cache. It only lacks the ability to take care of metadata allocations. H5FDfphdf5.[ch]: Start of a new driver for FPHDF5. Not fully implemented just yet... Platforms tested: Linux
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