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* Merge remote-tracking branch 'canonical/develop' into hpcio/post_open_fixDana Robinson2021-11-0331-766/+354
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| * OESS-168: Remove clang warnings. (#1146)H. Joe Lee2021-11-021-3/+3
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| * OESS-168: Remove clang warnings. (#1135)H. Joe Lee2021-11-021-1/+1
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| * OESS-168: Remove clang warnings. (#1127)H. Joe Lee2021-11-021-6/+6
| | | | | | | | | | * OESS-168: Remove clang warnings. * OESS-168: Address @lrknox clang-format review.
| * Set the plugin path to the library default (#1144)Allen Byrne2021-10-291-0/+2
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| * correct error checking string (#1143)Scot Breitenfeld2021-10-291-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 * fixed error function string Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * Split dir create into separate macro (#1141)Allen Byrne2021-10-288-21/+31
| | | | | | | | | | * Split dir create into separate macro * Correct VFD settings
| * Github #1019 - add Fortran developer flags (#1090)Allen Byrne2021-10-275-10/+11
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| * H5repack tests should fail if a corrupted file causes h5repack to (#1138)Larry Knox2021-10-263-6/+28
| | | | | | | | | | | | * H5repack tests should fail if a corrupted file causes h5repack to segfault/core dump. * Add release note for HDFV-10590, CVE-2018-17432.
| * Consolidate VFD create list macro (#1132)Allen Byrne2021-10-267-10/+5
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| * Removes the "try free" behavior from the skip lists (#1126)Dana Robinson2021-10-223-678/+200
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * Removes the "try free" behavior from the skip lists This was only used in the ID code when iterating and a callback could delete IDs. It is not used anywhere else in the library and is now pointless overhead. Also quiets the const warnings when returning stored elements. They only need to be const with respect to the skip list code, which should never modify them. The library can do whatever it wants with the elements it stored. * Formatted source
| * OESS-168: Remove clang warnings. (#1117)H. Joe Lee2021-10-211-1/+1
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| * Fix map open to use correct VOL argument structure (#1116)jhendersonHDF2021-10-211-1/+3
| | | | | | Fix map iterate by setting key memory type ID field
| * Add release note for HDFFV-11150 fix. (#1106)Larry Knox2021-10-211-1/+23
| | | | | | | | | | * Add release note for HDFFV-11150 fix. * Add note about gif tool CVEs.
| * Correct java exception declarations (#1121)Allen Byrne2021-10-201-16/+19
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| * Fixed HL_test_packet, incorrect length assignment (#1100)Allen Byrne2021-10-202-3/+7
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| * Move test utilities to utils/test folder (#1109)Allen Byrne2021-10-2032-333/+340
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Move test utilities to utils/test folder * Fix makefile assignment * Add new dir * add new folder * Correct copied makefile * Fix dir typo * Add missing include dir * Remove unnecessary lib link * Correct dependent dirs * Fix conditional checks * Disable test if not built * fix path to executable * Use fixture for swmr_vfd check * Add release note * Correct shell tests and c++ flag warning * Update autotools c++ warning * Fix typo
| * OESS-168: Remove clang warnings. (#1075)H. Joe Lee2021-10-201-12/+12
| | | | | | | | | | | | | | | | | | * OESS-168: Remove clang warnings. * Committing clang-format changes * OESS-168: Fix CI failure. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * OESS-168: Remove clang warnings. (#1072)H. Joe Lee2021-10-151-13/+13
| | | | | | | | | | | | | | | | | | | | | | | | | | * OESS-168: Remove clang warnings. * Committing clang-format changes * Address review by @jehndersonHDF. * Address review by @jehndersonHDF. * OESS-168: Fix CI failure. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* | Merge remote-tracking branch 'nersc/post_open_fix' into hpcio/post_open_fixDana Robinson2021-11-021-4/+11
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| * | Committing clang-format changesgithub-actions2021-10-291-5/+7
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| * | Merge remote-tracking branch 'origin/develop' into post_open_fixQuincey Koziol2021-10-29187-2518/+6509
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* | | | Consolidate VFD create list macroAllen Byrne2021-10-220-0/+0
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* | | | Consolidate VFD create list macroAllen Byrne2021-10-227-10/+5
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* | | | Adjust CMake and Java for new API H5VLfapl_is_nativeAllen Byrne2021-10-2162-459/+124
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* | | | Committing clang-format changesgithub-actions2021-10-211-3/+1
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* | | | Adds H5VLfapl_is_native public API callDana Robinson2021-10-213-1/+49
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* | | | Merge branch 'hpcio/post_open_fix' of https://github.com/derobins/hdf5.git ↵Allen Byrne2021-10-192-3/+5
|\ \ \ \ | | | | | | | | | | | | | | | into hpcio/post_open_fix
| * | | | Committing clang-format changesgithub-actions2021-10-192-3/+5
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* | | | | Add new H5Pdevelop header to hdf5.hAllen Byrne2021-10-191-0/+1
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* | | | Java fixes for test jar and new apisAllen Byrne2021-10-194-2/+95
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* | | | Move location of test programAllen Byrne2021-10-191-1/+1
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* | | | Merge utils changes from developAllen Byrne2021-10-1938-373/+313
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* | | | Merge branch 'hpcio/post_open_fix' of https://github.com/derobins/hdf5 into ↵Dana Robinson2021-10-142-3/+4
|\ \ \ \ | | | | | | | | | | | | | | | hpcio/post_open_fix
| * | | | Committing clang-format changesgithub-actions2021-10-142-3/+4
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* | | | | Reverts rename of SWMR VFD check program, which causes CMake issuesDana Robinson2021-10-1416-37/+38
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* | | | Merge remote-tracking branch 'canonical/develop' into hpcio/post_open_fixDana Robinson2021-10-14204-2890/+6601
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| * | OESS-168: Remove clang warnings. (#1077)H. Joe Lee2021-10-081-1/+1
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| * | OESS-168: Remove clang warnings. (#1076)H. Joe Lee2021-10-082-10/+10
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| * | Add missing dataset reference text (#1081)Allen Byrne2021-10-071-4/+4
| | | | | | | | | | | | | | | * Add missing dataset reference text * Only print name if not printing data
| * | OESS-168: Remove clang warnings. (#1074)H. Joe Lee2021-10-061-2/+2
| | | | | | | | | | | | | | | | | | | | | * OESS-168: Remove clang warnings. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * | OESS-168: Remove clang warnings. (#1071)H. Joe Lee2021-10-061-3/+3
| | | | | | | | | | | | | | | * OESS-168: Remove clang warnings. * Address review by @jehndersonHDF.
| * | To reduce maintenance effort, delete the `noerror-` variants of the compiler ↵David Young2021-10-0616-356/+75
| |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | flags files (#1033) * Avoid maintenance headaches: delete the `noerror-` variants of the compiler flags files, since they essentially duplicate the `error-` files modulo the replacement of `-Werror=` with `-W` and any changes in comments. (I verified the duplication with a script.) For autoconf, reinstate the use of the `demote_errors` shell function to derive the `noerror-` content from the `error-` content. `demote_errors` replaces `-Werror=` with `-W` when `WARNINGS_AS_ERRORS` is `no`. Slightly reorder `configure.ac` so that the setting of `WARNINGS_AS_ERRORS` takes effect before the `error-` files are sourced. * Take a stab at updating the CMake files to match the changes I made to the autoconf files to remove `noerror-` files. I'm not much of a CMake user so these changes are quite rough. Looks like the duplication can be reduced with the introduction of a new macro. * Delete `noerror-` files from the MANIFEST. * Reduce duplication in the CMake files: perform the HDF5_ENABLE_WARNINGS_AS_ERRORS test once in the ADD_H5_FLAGS macro. * Add a release note.
| * Add tools/src/h5perf/Makefile.in (#1066)Larry Knox2021-10-041-0/+1
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| * Fix ASAN issue in h5dump error path (#1051)Allen Byrne2021-10-032-3/+1
| | | | | | | | | | * Fix ASAN issue in h5dump error path * Rework error allocation free.
| * ASAN fix for test_ld - free sub-allocation of fields (#1052)Allen Byrne2021-10-011-34/+36
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| * Fix bug with cross platform compatibility of references within vlens. (#1064)Neil Fortner2021-10-012-2/+11
| | | | | | No testing yet.
| * OESS-168: Remove clang warnings. (#1057)H. Joe Lee2021-09-301-56/+56
| | | | | | | | | | | | | | * OESS-168: Remove clang warnings. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * OESS-168: Remove clang warnings. (#1056)H. Joe Lee2021-09-301-20/+20
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| * Move HDstrcmp operations inside casting block for PGI compilers (#1063)jhendersonHDF2021-09-301-6/+6
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