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* Refixed HDFFV-10578Binh-Minh Ribler2019-01-082-2/+17
| | | | | | | | | | | | Description: Applied Neil's fix for this issue after removing previous attempt. The resources are now released in init_objs() when failure occurs there. Neil will fix HDFFV-10676 separately. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
* Removed previous change in H5O__chunk_deserialize().Binh-Minh Ribler2019-01-071-1/+0
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* Removed the previous change in H5O__chunk_deserialize()Binh-Minh Ribler2019-01-071-2/+0
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* Removed previous change in table_list_add().Binh-Minh Ribler2019-01-071-3/+3
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* Removed the previous change in table_list_add()Binh-Minh Ribler2019-01-071-2/+1
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* Updated per reviewBinh-Minh Ribler2019-01-071-1/+2
| | | | | | | | Description: HDFFV-10676 - CVE-2018-13873 Changed the new assert to if statement, per Dana's comment. Platforms tested: Linux/64 (jelly)
* Merge branch 'develop' of ↵Binh-Minh Ribler2019-01-06111-4977/+9119
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_fixbug into develop
| * Merge pull request #1433 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developLarry Knox2019-01-047-28/+90
| |\ | | | | | | | | | | | | | | | | | | * commit '564565b15ed38d78cb7b29b8c9d9b322d224ab42': HDFFV-10664 update reference file HDFFV-10664 update reference files HDFFV-10664 add missing function and check for restriction
| | * HDFFV-10664 update reference fileAllen Byrne2019-01-041-3/+1
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| | * HDFFV-10664 update reference filesAllen Byrne2019-01-043-23/+6
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| | * HDFFV-10664 add missing function and check for restrictionAllen Byrne2019-01-044-4/+85
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| * | Merge pull request #1425 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2019-01-042-0/+8
| |\ \ | | | | | | | | | | | | | | | | * commit '659dd9bccf69f32bfdd01dc49410116ec5c1b0bb': Align H5Lcreate_ud behavior with documentation for NULL udata pointer
| | * | Align H5Lcreate_ud behavior with documentation for NULL udata pointerJordan Henderson2019-01-032-0/+8
| | | | | | | | | | | | | | | | Add test for H5Lcreate_ud fix
| * | | Merge pull request #1429 in HDFFV/hdf5 from ↵Larry Knox2019-01-042-0/+23
| |\ \ \ | | |_|/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | HDFFV-10596-fortran-library-names-differ to develop * commit 'f4c9ec5d41aa53829617274d3286f1e9a45ae57e': Add RELEASE.txt entry for HDFFV-10596. Uninstall should remove the libhdf5_hl_fortran links. Add symlinks named libhdf5_hl_fortran* to libhdf5hl_fortran in Makefile.am to match cmake install and the name pattern for other hl lib files.
| | * | Merge remote-tracking branch 'origin/develop' into ↵Larry Knox2019-01-044-269/+290
| | |\ \ | | |/ / | |/| | | | | | HDFFV-10596-fortran-library-names-differ
| * | | Merge pull request #1430 in HDFFV/hdf5 from ↵jake.smith2019-01-041-24/+17
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:dset_ohdr_minimize to develop * commit 'f7115c31363e80e850c0a228e63a5a035c48b74a': Remove "bad" statements at end of TEST_ERROR. Formerly arguments to FAIL_PUTS_ERROR Add semicolon at end of TEST_ERROR() invocation for consistency.
| | * | | Remove "bad" statements at end of TEST_ERROR.Jacob Smith2019-01-041-24/+17
| | | | | | | | | | | | | | | | | | | | Formerly arguments to FAIL_PUTS_ERROR
| | * | | Add semicolon at end of TEST_ERROR() invocation for consistency.Jacob Smith2019-01-041-1/+1
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| * | | | Merge pull request #1428 in HDFFV/hdf5 from ↵Dana Robinson2019-01-043-245/+273
| |\ \ \ \ | | |/ / / | |/| | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:openmpi_tweaks to develop * commit 'd59aa1d75cb6d0ae4f5964d017e275aa53394eb6': Cleaned up the parallel flush test and set t_pflush1 to always fail. Also set CMake to handle this.
| | * | | Cleaned up the parallel flush test and set t_pflush1 to always fail.Dana Robinson2019-01-043-245/+273
| | | | | | | | | | | | | | | | | | | | Also set CMake to handle this.
| | | * | Add RELEASE.txt entry for HDFFV-10596.Larry Knox2019-01-041-0/+9
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| | | * | Uninstall should remove the libhdf5_hl_fortran links.Larry Knox2019-01-041-0/+1
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| | | * | Add symlinks named libhdf5_hl_fortran* to libhdf5hl_fortran inLarry Knox2019-01-042-1/+14
| | |/ / | |/| | | | | | | | | | | | | | | | | | | | | | Makefile.am to match cmake install and the name pattern for other hl lib files. Add missing ';' to test/dsets.c line 13075.
| * | | Merge pull request #1427 in HDFFV/hdf5 from ↵jake.smith2019-01-042-37/+37
| |\ \ \ | | |/ / | |/| | | | | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:dset_ohdr_minimize to develop * commit '763db8178e673fdcae4a370fe2e6d345f905d5f1': Change FAIL_PUTS_ERROR to TEST_ERROR. Update calls: H5Dcreate to H5Dcreate2, H5Acreate to H5Acreate2.
| | * | Change FAIL_PUTS_ERROR to TEST_ERROR.Jacob Smith2019-01-041-17/+17
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| | * | Update calls: H5Dcreate to H5Dcreate2, H5Acreate to H5Acreate2.Jacob Smith2019-01-031-20/+20
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| * | | Merge pull request #1426 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-01-036-5/+20
| |\ \ \ | | |/ / | |/| | | | | | | | | | | | | | | | | | | | | | * commit 'f4516d40feb7ea696e228253bc64a94f55296cbb': Fix comment Update toolchain comment Use c99 standard cmake variable Add PGI toolchain
| | * | Fix commentAllen Byrne2019-01-031-1/+2
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| | * | Update toolchain commentAllen Byrne2019-01-033-1/+4
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| | * | Use c99 standard cmake variableAllen Byrne2019-01-021-3/+3
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| | * | Add PGI toolchainAllen Byrne2019-01-022-0/+11
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| * | Merge pull request #1408 in HDFFV/hdf5 from ↵Binh-Minh Ribler2019-01-032-5/+26
| |\ \ | | |/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr_fixbug:develop to develop Merged to catch daily test. * commit '40c55f24ecbdd322fba527d768689fbdbd268374': Removed a comment. Fixed documentation - typo only Fixed CVE division-by-zero issues Description: Fixed HDFFV-10577 and similar issues found in H5Dchunk.c. All the occurrences are in: H5D__create_chunk_map_single H5D__create_chunk_file_map_hyper H5D__chunk_allocate H5D__chunk_update_old_edge_chunks H5D__chunk_prune_by_extent H5D__chunk_copy_cb H5D__chunk_collective_fill Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
| * | Merge pull request #1421 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-01-0213-87/+307
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'ed0c468902409ae7fa8fb91c5f5a3a3093846736': HDFFV-10664 add check for state before set call HDFFV-10546 refactor variable name HDFFV-10664 minimized dataset headers for java interface
| | * | HDFFV-10664 add check for state before set callAllen Byrne2019-01-022-2/+8
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| | * | HDFFV-10546 refactor variable nameAllen Byrne2019-01-024-83/+83
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| | * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-01-0214-307/+297
| | |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'af21ce90d9465e805807f17da21f93e64e03492a': Changed to Unix line endings and chmod -x. Cleaned up and normalized VFD init calls.
| | * | | HDFFV-10664 minimized dataset headers for java interfaceAllen Byrne2018-12-319-4/+218
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| * | | | Merge pull request #1414 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2019-01-0210-21/+317
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit 'd3dff6efe6f769b219f9dcccebd057afe75ed3c7': Correction based on code review. Changes based on feedback from pull request. Fix for HDFFV-10659: The library abort with "infinite loop closing library" after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
| | * \ \ \ Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Vailin Choi2019-01-0255-2079/+4331
| | |\ \ \ \ | | |/ / / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop Resolve conflicts: Conflicts: test/Makefile.am
| * | | | | Merge pull request #1420 in HDFFV/hdf5 from ↵jake.smith2019-01-021-1/+1
| |\ \ \ \ \ | | |_|_|/ / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:dset_ohdr_minimize to develop * commit '8324be7fad5f1417aca3d283a8f8caf6b75c4af7': fix wrong function name that is missed by correctional macro
| | * | | | fix wrong function name that is missed by correctional macroJacob Smith2018-12-311-1/+1
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| * | | | Merge pull request #1423 in HDFFV/hdf5 from ↵Dana Robinson2019-01-027-245/+245
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:develop_minor_pr to develop * commit '1f644fe7cd0188628571c5527f51fce4ddeeebf4': Changed to Unix line endings and chmod -x.
| | * | | | Changed to Unix line endings and chmod -x.Dana Robinson2019-01-017-245/+245
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| * | | | Merge pull request #1422 in HDFFV/hdf5 from ↵Dana Robinson2019-01-017-62/+52
| |\ \ \ \ | | |/ / / | |/| | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:vfd_init_cleanup to develop * commit '07b76068a4517f874fc5584049178ed5f61e3cea': Cleaned up and normalized VFD init calls.
| | * | | Merge branch 'develop' into vfd_init_cleanupDana Robinson2019-01-01131-8266/+13055
| | |\ \ \ | | |/ / / | |/| | |
| * | | | Merge pull request #1416 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2018-12-312-6/+9
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit '0e6cf18b06d71dc8da9307dddce5e1833f197e19': Fix runtest case for data to stdout in tool
| | * \ \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-12-317-7/+85
| | |\ \ \ \ | | |/ / / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'b30a1fe44aa804a67f2291005bf8135ac5c2dc99': Updated the parallel install docs. Eliminated the need for a separate script variable. Added a helpful message to the flush script. Added a shell script so we can run the parallel flush test on OpenMPI.
| * | | | | Merge pull request #1400 in HDFFV/hdf5 from ↵Dana Robinson2018-12-317-7/+85
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:openmpi_tweaks to develop * commit 'd6c2a96ac2f103d90b96d5b39814810e6a31ef99': Updated the parallel install docs. Eliminated the need for a separate script variable. Added a helpful message to the flush script. Added a shell script so we can run the parallel flush test on OpenMPI.
| | * | | | | Updated the parallel install docs.Dana Robinson2018-12-311-8/+3
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| | * | | | | Eliminated the need for a separate script variable.Dana Robinson2018-12-312-8/+14
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