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* Merge branch 'develop' into evict_on_closeDana Robinson2016-09-14309-10319/+14976
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| * Merge pull request #11 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cppapi:develop ↵Binh-Minh Ribler2016-09-072-5/+22
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop Purpose: Code cleanup Description: - Used FP_EPSILON in comparing float values to verify read data - Casted C macro to fix mismatched types in verify_val calls Platforms tested: Linux/32 2.6 (jam), Linux/64 (platypus), Darwin (osx1010test) * commit '478f771243b4e7b7c416dde22b5dcde13e1f3541': Purpose: Code cleanup Description: - Used FP_EPSILON in comparing float values to verify read data - Casted C macro to fix mismatched types in verify_val calls Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
| | * Purpose: Code cleanupBinh-Minh Ribler2016-09-022-5/+22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Used FP_EPSILON in comparing float values to verify read data - Casted C macro to fix mismatched types in verify_val calls Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
| * | Merge pull request #18 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2016-09-061-1/+1
| |\ \ | | | | | | | | | | | | | | | | * commit '03169f5b19e64ab568e13bc883ef5047542b632e': Restrict git commit hash in tar file names to first 7 characters with --short option.
| | * | Restrict git commit hash in tar file names to first 7 characters withlrknox2016-09-061-1/+1
| | | | | | | | | | | | | | | | --short option.
| * | | Merge pull request #17 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2016-09-061-6/+6
| |\ \ \ | | |/ / | |/| | | | | | | | | | * commit '9bcb5305db7226d06076aef5aada8c07fff1c41c': Add longer timeout to cache tests - test has consistently exceeded default timing.
| | * | Add longer timeout to cache tests - test has consistently exceededAllen Byrne2016-09-061-6/+6
| |/ / | | | | | | default timing.
| * | Merge pull request #14 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2016-09-021-3/+3
| |\ \ | | | | | | | | | | | | | | | | * commit '49ea5bd2a9f23d53f94377457376c91f51e1d287': Removed -p option from invocation of autogen.sh by h5vers script to allow running h5vers on machines without /usr/hdf/bin/AUTOTOOLS.
| | * \ Merge branch 'develop' of ↵lrknox2016-09-020-0/+0
| | |\ \ | | |/ / | |/| | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop
| * | | Merge pull request #12 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2016-09-025-0/+936
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | * commit '1bad18cc24e0108dea2a9e48402bba9d32e3b96c': Add bin/pkgscrpts files to MANIFEST. dd bin/pkgscrpts directory with scripts to package deployed unix binaries into tarfiles.
| | | * | Removed -p option from invocation of autogen.sh by h5vers script tolrknox2016-09-021-3/+3
| | |/ / | | | | | | | | | | | | allow running h5vers on machines without /usr/hdf/bin/AUTOTOOLS.
| | * | Add bin/pkgscrpts files to MANIFEST.lrknox2016-09-021-0/+4
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| | * | dd bin/pkgscrpts directory with scripts to package deployed unix binarieslrknox2016-09-024-0/+932
| |/ / | | | | | | | | | into tarfiles.
| * | Merge pull request #9 in HDFFV/hdf5 from ↵Larry Knox2016-09-023-1/+980
| |\ \ | | |/ | |/| | | | | | | | | | | | | ~LRKNOX/hdf5_lrk:HDFFV-9978-build-scripts-release-bbrelease to develop * commit 'a4c60918a741e029c9ace1a8737f414cc0f49903': Added .gitignore and .gitattributes files with contents from the last git mirror or the hdf5 repository prior to the manual migration of the hdf5 svn repository to the git repository in bitbucket. Added entries to MANIFEST for the 2 new files.
| | * Added .gitignore and .gitattributes files with contents from the lastlrknox2016-09-013-1/+980
| | | | | | | | | | | | | | | | | | git mirror or the hdf5 repository prior to the manual migration of the hdf5 svn repository to the git repository in bitbucket. Added entries to MANIFEST for the 2 new files.
| * | Merge pull request #7 in HDFFV/hdf5 from ↵Allen Byrne2016-09-011-1/+2
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | ~BYRN/hdf5_adb:bugfix/HDFFV-9431-cpp_testhdf5 to develop * commit '9842d2ae5f5956ea29e55c4e8d4ce9709882c879': Add VFD name to test folder
| | * | Add VFD name to test folderAllen Byrne2016-09-011-1/+2
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| * | Merge pull request #6 in HDFFV/hdf5 from ↵Larry Knox2016-08-311-5/+14
| |\ \ | | |/ | | | | | | | | | | | | | | | ~LRKNOX/hdf5_lrk:HDFFV-9978-build-scripts-release-bbrelease to develop * commit '5372b04bab6e36df2c3aa641307c2a93eccc35e9': Merge pull request #4 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_8 to hdf5_1_8
| | * Merge pull request #4 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_8 to hdf5_1_8Larry Knox2016-08-311-5/+14
| | | | | | | | | | | | | | | | | | | | | * commit '5aee5213190f145b5a734f5dc76a67c82f7d6b82': emoved .gitattributes and .gitignore, as the manual migration did not create them. Corrected bbrelease script to create new release version with revision hash. Translate svn commands to git commands for chkmanifest and bbrelease scripts with source in git repository. Removed the -p option from the command to run autogen.sh. It interfered with running chkmanifest on a machine with the correct autotools versions but without access to /usr/hdf/bin/AUTOTOOLS. The autogen.sh script says the option is for HDF group use only and is likely to be removed. The same effect can be achieved by adding /usr/hdf/bin/AUTOTOOLS to the beginning of PATH. Removed the -p option from the command to run autogen.sh. It interfered with running chkmanifest on a machine with the correct autotools versions but without access to /usr/hdf/bin/AUTOTOOLS. The autogen.sh script says the option is for HDF group use only and is likely to be removed. The same effect can be achieved by adding /usr/hdf/bin/AUTOTOOLS to the beginning of PATH.
| * | Merge pull request #3 in HDFFV/hdf5 from ↵Larry Knox2016-08-311-2/+2
| |\ \ | | |/ | | | | | | | | | | | | | | | ~LRKNOX/hdf5_lrk:HDFFV-9978-build-scripts-release-bbrelease to develop * commit 'b368f0de8d53ca536e95f71d88504cd1ee3ea33c': Removed the -p option from the command to run autogen.sh. It interfered with running chkmanifest on a machine with the correct autotools versions but without access to /usr/hdf/bin/AUTOTOOLS. The autogen.sh script says the option is for HDF group use only and is likely to be removed. The same effect can be achieved by adding /usr/hdf/bin/AUTOTOOLS to the beginning of PATH.
| | * Removed the -p option from the command to run autogen.sh. It interferedlrknox2016-08-301-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | with running chkmanifest on a machine with the correct autotools versions but without access to /usr/hdf/bin/AUTOTOOLS. The autogen.sh script says the option is for HDF group use only and is likely to be removed. The same effect can be achieved by adding /usr/hdf/bin/AUTOTOOLS to the beginning of PATH.
| * | Merge pull request #2 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2016-08-301-1/+5
| |\ \ | | | | | | | | | | | | | | | | * commit '203b2b2e75816bfd0f4d54ecd2cb1f41b1247447': Windows returns -1 instaed of 255 as on linux for the test
| | * | Windows returns -1 instaed of 255 as on linux for the testAllen Byrne2016-08-301-1/+5
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| * | Merge pull request #1 in HDFFV/hdf5 from ↵Allen Byrne2016-08-292-13/+15
| |\ \ | | |/ | | | | | | | | | | | | | | | ~LRKNOX/hdf5_lrk:HDFFV-9978-build-scripts-release-bbrelease to develop * commit 'ba5652ffc27be96fa7275b039ce2c8e249751657': Translate svn commands to git commands for chkmanifest and bbrelease scripts with source in git repository.
| | * Translate svn commands to git commands for chkmanifest and bbreleaselrknox2016-08-292-13/+15
| |/ | | | | | | scripts with source in git repository.
| * [svn-r30321] HDFFV-9974: Correct parsing of UD filter parameters.Allen Byrne2016-08-254-8/+18
| | | | | | | | Verified by user, who reported issue.
| * [svn-r30319] Fix for daily test failure on emu -m64 for the checkin #30310. Vailin Choi2016-08-241-0/+0
| | | | | | | | Tested on emu (-m64 & -m32), platypus, mayll, moohan, osx1010test, quail, kituo, ostrich, kite.
| * [svn-r30318] whitespace cleanupAllen Byrne2016-08-241-28/+28
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| * [svn-r30317] Whitespace cleanupAllen Byrne2016-08-241-364/+297
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| * [svn-r30316] Use dns name for CDash instead of ip addressAllen Byrne2016-08-221-1/+1
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| * [svn-r30315] HDFFV-9972: Fix test reference and change default for ↵Allen Byrne2016-08-225-14/+14
| | | | | | | | H5Iget_name in JNI API.
| * [svn-r30314] HDFFV-9971: Change the usage of a CMake variable for the build ↵Allen Byrne2016-08-2210-44/+55
| | | | | | | | type to the recommended variable name. Updated documentation.
| * [svn-r30313] HDFFV-9972: unsatisfied link error under debug on Windows.Allen Byrne2016-08-2224-1632/+1626
| | | | | | | | | | | | | | | | | | | | Added windows name suffix for debug to CMake cmd_arg for examples and test. Fix issues discovered under debug testing; Create a version of H5Iget_name that correctly returns the name. Rework PIN_JAVA_STRING macro and usage to eliminate possible memory leaks by using if-else instead of mid-routine return. Update example to use new H5Iget_name API. Tested: windows under debug
| * [svn-r30312] HDFFV-9706: Commit changes as discussed in HDF5-379.Allen Byrne2016-08-221-25/+32
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| * [svn-r30311] Purpose: Fix bug HDFFR-9920 cont.Binh-Minh Ribler2016-08-2224-411/+374
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | trunk: Description: Continued rearranging the classes to model the relationship of HDF5 objects more accurately. The changes included: - in the baseclass list of Attribute, changed "public IdComponent" to "public H5Location", because location sometime can be specified with attribute - moved H5A wrappers in H5Location to H5Object because H5A functions can't be called on attribute id - removed the stubs Attribute::iterateAttrs and Attribute::renameAttr - removed Attribute::getFileName and Attribute::flush, because H5Location has them - result of the modified partial class diagram, regarding Attribute IdComponent | H5Location AbstractDs / \ / H5Object Attribute Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
| * [svn-r30310] Fix daily test failure for previous checkin #30308.Vailin Choi2016-08-223-1/+1
| | | | | | | | Tested on platypus and mayll.
| * [svn-r30309] Purpose: Fix bug HDFFR-9920Binh-Minh Ribler2016-08-2023-1408/+1541
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Rearranged the classes to model the relationship of HDF5 objects more accurately. The changes included: - moved CommonFG's methods to Group - removed CommonFG from Group's base class list - removed CommonFG from H5File's base class list and changed "public H5Location" to "public Group" in the base class list - CommonFG became unused - result of the modified partial class diagram: IdComponent | H5Location / H5Object | / / \ DadaType Group DataSet | H5File Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
| * [svn-r30308] Fix for HDFFV-7991--error when copying dataset with attribute ↵Vailin Choi2016-08-196-4/+418
| | | | | | | | | | | | | | which is a compound datatype consisting of a variable length string. Tested on mayll, platypus, osx1010test, emu, kituo, kite, quail, moohan, ostrich.
| * [svn-r30306] Updated vfd test to be better about fapls and h5_reset().Dana Robinson2016-08-191-72/+110
| | | | | | | | | | | | | | | | | | | | | | Prevents the test from segfaulting in other sub-tests when a previous test fails. Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0 Autotools serial + direct VFD (vfd test only) Also tested with a forced error to ensure that the test no longer segfaults and confirmed that all test files are cleaned up.
| * [svn-r30303] Fixed unbalanced parentheses in H5F_SAME_SHARED macro. Dana Robinson2016-08-181-1/+1
| | | | | | | | | | | | | | | | This version of the macro isn't used anywhere in the HDF5 source. Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0 Autotools serial
| * [svn-r30301] Changed the print ordering of the SIZE_OF/KIND program output ↵Scot Breitenfeld2016-08-181-9/+9
| | | | | | | | | | | | in order to match what is done in cmake. Tested: gnu, jelly.
| * [svn-r30300] Fixed the ordering for KIND and SIZE_OF in the fortarn program ↵Scot Breitenfeld2016-08-181-3/+3
| | | | | | | | | | | | | | | | in order to match the sed commands. Should only matter for the NAG compiler. Tested: (gnu, jelly)
| * [svn-r30297] Changed FAIL_STACK_ERROR to TEST_ERROR in test/vfd.c.Dana Robinson2016-08-181-51/+51
| | | | | | | | | | Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0 Autotools serial, vfd test only
| * [svn-r30295] Minor whitespace cleanup in h5test.c.Dana Robinson2016-08-171-45/+55
| | | | | | | | | | Tested on: 64-bit Ubuntu 16.04 LTS w/ gcc 5.4.0 Autotools serial w/ make check-vfd
| * [svn-r30292] Description:Quincey Koziol2016-08-161-1/+1
| | | | | | | | | | | | | | | | Correct failure on older Windows compilers. Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r30289] Fix for HDFFV-9960 H5DOappend without append callback.Vailin Choi2016-08-141-20/+18
| | | | | | | | | | This is the second part of the fix--see crucible review HDF5-383. Tested on mayll, platypus, osx1010test, emu, kituo, kite, quail, moohan, ostrich.
| * [svn-r30285] Description:Quincey Koziol2016-08-1331-350/+331
| | | | | | | | | | | | | | | | | | More warning cleanups, bringing the build down to 25 unique types of warnings, with 550 warnings in 122 files (down from 28, 770, and 134). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
| * [svn-r30279] Purpose: Code improvement (HDFFR-9725)Binh-Minh Ribler2016-08-1213-101/+78
| | | | | | | | | | | | | | | | | | Description: Removed deprecated functions in previous releases due to missing const. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
| * [svn-r30275] Rework test_mf_bug1 to work with multi and split drivers.Neil Fortner2016-08-091-66/+106
| | | | | | | | Tested: ummon
| * [svn-r30272] Purpose: Code improvementBinh-Minh Ribler2016-08-099-82/+37
| | | | | | | | | | | | | | | | | | | | | | Description: - Added "const" to arguments that should be const - Added "const" to const functions, i.e., function that don't change the objects they operate on. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
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