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| * OESS-168: Remove clang warnings. (#1057)H. Joe Lee2021-09-301-56/+56
| | | | | | | | | | | | | | * OESS-168: Remove clang warnings. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * OESS-168: Remove clang warnings. (#1056)H. Joe Lee2021-09-301-20/+20
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| * Move HDstrcmp operations inside casting block for PGI compilers (#1063)jhendersonHDF2021-09-301-6/+6
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| * Fix Mirror, HDFS and ROS3 case statements for VFD value in H5trace (#1062)jhendersonHDF2021-09-301-6/+6
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| * Update compact dataset I/O routines to handle driver-level memory copy (#1054)jhendersonHDF2021-09-305-13/+187
| | | | | | | | | | | | | | | | | | | | * Update compact dataset I/O routines to handle driver-level memory copy * Combine compact I/O read/write struct into single I/O struct Rename CTL memory copy flag and H5Fquery routine to get file driver structure * Add RELEASE.txt entry for new "ctl" memory copy operation
| * VFD plugins (#602)jhendersonHDF2021-09-29169-2283/+6120
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Implement support for loading of Virtual File Drivers as plugins Fix plugin caching for VOL connector and VFD plugins Fix plugin iteration to skip paths that can't be opened * Enable dynamic loading of VFDs with HDF5_DRIVER environment variable * Temporarily disable error reporting during H5F_open double file open * Default to using HDstat in h5_get_file_size for unknown VFDs * Use macros for some environment variables that HDF5 interprets * Update "null" and "ctl testing" VFDs
| * OESS-168: Remove clang warnings. (#1050)H. Joe Lee2021-09-291-1/+1
| | | | | | This patch will remove clang double-promotion warning.
| * OESS-168: Remove clang warnings (#1049)H. Joe Lee2021-09-291-1/+1
| | | | | | This patch will remove clang double-promotion warning.
| * OESS-168: Remove clang warnings. (#1047)H. Joe Lee2021-09-291-1/+1
| | | | | | | | | | This patch will remove clang warnings on Mac: 'float' to 'double' [-Wdouble-promotion]
| * OESS-168: Remove clang warnings. (#1046)H. Joe Lee2021-09-291-9/+9
| | | | | | | | | | | | | | This patch will remove clang warnings on Mac: ``` warning: implicit conversion increases floating-point precision: 'float' to 'double' [-Wdouble-promotion] ```
| * Update version to 1.13.0-7 after snapshot release 1.13.0-6. (#1048)Larry Knox2021-09-296-7/+7
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| * Update Platforms Tested in RELEASE.txt. (#1045)hdf5-1_13_0-rc6Larry Knox2021-09-286-149/+103
| | | | | | | | | | | | * Update Platforms Tested in RELEASE.txt. Remove Tested Configuration Features Summary for updated replacement. * Set version to 1.13.0-6 for rc6 snapshot.
| * Develop cmake install dir (#1041)Allen Byrne2021-09-284-9/+18
| | | | | | | | | | | | | | * Corrected path searched by CMake find_package command * Correct path for depend libs * Adjust examples script for install path
| * Develop libaec up (#1037)Allen Byrne2021-09-281-1/+7
| | | | | | | | | | * Upgrade libaec to 1.0.6 * correct include file name
* | Updated scripts to match changes on developQuincey Koziol2021-09-284-20/+37
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* | Merge remote-tracking branch 'origin/develop' into post_open_fixQuincey Koziol2021-09-27171-3020/+6857
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| * MS clang needs EHsc flag (#1035)Allen Byrne2021-09-241-2/+2
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| * VFD ctl feature (#981)jhendersonHDF2021-09-2320-160/+1082
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Added "ctl" callback to the VFD interface, and the associated H5FDctl() and H5FD_ctl() calls. Modified the MPIO VFD accordingly -- specifically: Added ctl() call with op-code support to expose rank, size, and communicator. Modified H5FD_mpi_get_rank(), H5FD_mpi_get_size(), and H5FD_mpi_get_comm() to use the new ctl() callback. In passing removed the const qualifier from the file parameter of these functions, as the file parameter of the ctl callback is not const. Deleted the old H5FD__mpio_mpi_rank(), H5FD__mpio_mpi_size(), and H5FD__mpio_communicator() calls from the MPIO VFD. Deleted H5FD_class_mpi_t from H5FDprivate.h, and modified the MPIO VFD accordingly. Note that all VFDs now use H5FD_class_t, with no special class for VFDs that that support MPI. Some minor touch ups to the Neil's selection I/O mods in passing. Tested serial and parallel, debug and production on charis and jelly. * Reserve a range of VFD "ctl" opcodes for library and experimental usage * Add "ctl" callbacks to passthrough VFDs * Add RELEASE.txt entry for "ctl" callback * Use H5FDopen with H5F_ACC_RDWR flag instead of H5F_ACC_TRUNC in vfd test * Remove handling of passthrough "ctl" flag from multi VFD * Move logic for testing H5FD_CTL__TEST_OPCODE into a testing VFD Revise description of "ctl" callback in RELEASE.txt Remove unused H5FD_CTL__NUM_OPCODES definition Fix some warnings in multi VFD Co-authored-by: mainzer <mainzer#hdfgroup.org>
| * Need to match clang and versions not just "Clang" (#1029)Allen Byrne2021-09-224-20/+12
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| * HDFFV-11266 - add option to build HL tools (#1018)Allen Byrne2021-09-167-5/+47
| | | | | | | | | | | | | | * HDFFV-11266 - add option to build HL tools * Correct if syntax * Correct name of conditional
| * Disable fortran warning (#1014)Allen Byrne2021-09-162-7/+8
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| * Modified gcc/clang warning suppression macros to account for some warnings ↵Sean McBride2021-09-1619-134/+162
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | flags being supported by one compiler but not the other (#379) * Committing clang-format changes * Fixed GCC warning suppression pragmas to also work with clang H5_GCC_DIAG_ON remains gcc-only. Added a new H5_CLANG_DIAG_ON that's clang-only, but it's not used anywhere currently. Added a new H5_GCC_CLANG_DIAG_ON that works with both compilers, which afterall support mostly the same warnings. Changed almost all uses of H5_GCC_DIAG_ON to use H5_GCC_CLANG_DIAG_ON, with the exception of a couple, where they really were suppressing gcc-only warnings. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * Fix java warnings (#1005)Allen Byrne2021-09-153-47/+37
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| * Fix several warnings (#720)jhendersonHDF2021-09-1419-60/+73
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| * H5Ztrans: (feature) Improved H5Z_xform_noop() and H5Z_xform_create() … (#933)Jan-Willem Blokland2021-09-135-6/+473
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * H5Ztrans: (feature) Improved H5Z_xform_noop() and H5Z_xform_create() function - Made a small improvement for H5Z_xform_noop() function. Now, the function will also return TRUE if the data transform function expression = "x". For this case, the HDF5 library behaves in a similar fashion as the case when no data transform function has been specified. - Improved the inline documentation of the function H5Z_xform_create() such it is more inline with the rest of the code. * Committing clang-format changes * H5Ztrans: (feature) Added 3 tests for improved H5Z_xform_noop() function - Added serial test with data transform expression = "x" to verify the improved H5Z_xform_noop() function behaves as expected. - Added 2 parallel tests with data transform expression = "x" in combination with a filter. Before, these tests will fail but with the improved H5Z_xform_noop() function they work and result in the expected behavior. - Small bug fix for one of parallel filter tests. * Committing clang-format changes * H5Ztrans: (feature) Added release note about detection of the simple data transform function "x". - Added a brief explanation about the implemented improvement of the detection of the simple data transform function "x" to the RELEASE.txt file. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * Update examples version because of HDFFV-11269 (#998)Allen Byrne2021-09-104-6/+6
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| * Fix various warnings and issues in doxygen doc generation (#994)Allen Byrne2021-09-1011-70/+110
| | | | | | | | | | * Fix various warnings and issues in doxygen doc generation * Add new file to list
| * Add high-level set/get for `unsigned long long` attributes. (#973)Alessandro Felder2021-09-084-33/+143
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * add ULL attr set/get signatures to LT public API * add LT implementation of ULL set/get attribute * fix copy-paste typo in test comment * add ULL test data * define ullong attr name global variable * add LT tests for ULL attr set/get * Committing clang-format changes * correct type passed to lt get attr test for ULL * update RELEASE.txt with added ULL set/get functionality Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * Update copyright headers with reproduction notice in 5 files (#993)Larry Knox2021-09-085-42/+37
| | | | | | | | | | | | | | | | | | * Update copyright headers with reproduction notice in 5 files that did not match terms in COPYING file . * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * Correction of pkg-config compile script. (#974)Allen Byrne2021-09-072-1/+9
| | | | | | | | | | * Correction of pkg-config compile script. * Reword note.
| * Sync CMake java macros with cmake repo (#982)Allen Byrne2021-09-075-369/+537
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| * Small doxygen fixes plus simple doc fixes (#989)Allen Byrne2021-09-044-12/+9
| | | | | | | | Change doxygen generated file location Clang format override for flags
| * Synch CMake doxygen options with autotools configure (#983)Allen Byrne2021-09-021-1/+2
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| * A batch of life-cycle examples for different modules (#654)Gerd Heber2021-09-0182-2063/+4126
| | | | | | | | | | | | | | | | | | * Create a tag file for permalinks. * Added DOXYGEN_TAG_FILE. * Added Doxygen life-cycle examples for different modules. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* | Merge branch 'develop' into post_open_fixQuincey Koziol2021-08-31143-2019/+2451
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| * Rework of PR #826 (#972)Scot Breitenfeld2021-08-304-3/+133
| | | | | | | | | | * H5Fget_name_f fixed to handle correctly trailing whitespaces and newly allocated buffers. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * Fixed failure on BE with xlf (#968)Scot Breitenfeld2021-08-301-2/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * fixed missed closing of a dataset * fixed missed closing of a dataset * fixed typo in error return * Committing clang-format changes * minor edits * code format * Committing clang-format changes * code format * minor edit * switched from using MPI_count, to actual bytes written for H5FD_mpio_debug rw debugging * Committing clang-format changes * changed size_i in printf to reflect the I/O. * Committing clang-format changes * Fixed seg fault with xlf on BE with -qintsize=8 Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * More various warnings (#958)Sean McBride2021-08-2513-51/+50
| | | | | | | | | | | | | | | | | | | | | | | | | | * Committing clang-format changes * Fixed various -Wdouble-promotion warnings * Fixed -Wshadow warning for `optopt` conflict On macOS at least, there is a global various named `optopt` in unistd.h. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * Move pwd header check to alphabetical order (#954)Dana Robinson2021-08-231-1/+1
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| * More clang tidy (#908)Sean McBride2021-08-2352-227/+219
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Pacify clang-analyzer-unix.cstring.NullArg * Apply some bugprone-suspicious-string-compare * Apply some readability-simplify-boolean-expr * Apply some readability-make-member-function-const * Apple some bugprone-macro-parentheses * Changed an f suffix to L for `long double` * Applied some readability-uppercase-literal-suffix automatically * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * cmake: simplify try_run result comparisons (#950)Ben Boeckel2021-08-231-5/+5
| | | | | | | | | | | | Instead of looking at `MATCHES 0` which runs a regex and returns a false positive for any result such as `10`, check if they are equal to `0`. Also quote `0` to avoid looking it up as a variable (which was left behind prior to the fix to use `${RETURN_VAR}` in the `c_run` macro).
| * Remove incorrect compiler check for windows clang sanitizer (#942)Allen Byrne2021-08-201-1/+1
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| * Get class name null str (#899)Sean McBride2021-08-201-2/+3
| | | | | | | | | | | | | | | | | | | | | | * Fixed MSVC compile error in C++23 mode Error message from MSVC with C++23 enabled: error C2440: 'return': cannot convert from 'int' to 'std::basic_string<char,std::char_traits,std::allocator>' * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * CMake: (fix) ph5example test (#935)Jan-Willem Blokland2021-08-191-2/+5
| | | | | | | | | | | | Ensure that the used number of processes times an integer number is equal to SPACE1_DIM1 and SPACE_DIM2. These variables are equal to 24 and are defined in ph5example.c. If this is not the case the ph5example test will fail.
| * CMake should use the output dir programs for shell scripts (#928)Allen Byrne2021-08-194-144/+52
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| * Fix issue #924 in develop branch: the ${HDF5_CXXLINKER} does not work in ↵Larry Knox2021-08-191-3/+3
| | | | | | | | | | | | | | | | | | | | | | h5c++ (#925) * Committing clang-format changes * Fix issue #924, ${HDF5_CXXLINKER} does not work in h5c++. 2 instances of CLINKER corrected to CXXLINKER comment border aligned Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * Develop windows compiler fixes (#912)Allen Byrne2021-08-195-33/+42
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * Fix windows compiler issues Restore MS C++ Default exception handling behavior #885 Remove clang toolchain as it skips compiler checks * Add check and header gaurd for pwd.h * Revert change * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * Correct number of args to Windows HDunsetenv macro (#939)Allen Byrne2021-08-191-1/+1
| | | | | | | | | | * Correct number of args to Windows HDunsetenv macro * Correct format
| * Remove non-published short arg names (#917)Allen Byrne2021-08-183-303/+0
| | | | | | | | | | | | | | * Remove non-published short arg names * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
| * Correct dataset close in java test (#919)Allen Byrne2021-08-181-1/+1
| | | | | | | | | | | | | | * Correct dataset close * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
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