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* [svn-r10006] Purpose:Pedro Vicente Nunes2005-02-144-24/+430
| | | | | | | | | | | | | | | | new features Description: added a 1st batch of tests for error conditions Solution: Platforms tested: linux solaris Misc. update:
* [svn-r10005] Purpose:James Laird2005-02-144-405/+107
| | | | | | | | | | | | | | | | | | | Configure feature Description: Changed bin/reconfigure.sh script to use autotools in AFS. Solution: Previously, the only machine with the correct versions of autoconf and automake was heping. Now both tools are installed in AFS, so in theory any hdf machine can be used to run the reconfigure script. Platforms tested: heping, eirene, verbena. On sleipnir and arabica the autotools were unable to find a version of m4 that was new enough for them. Misc. update:
* [svn-r10004] Purpose:MuQun Yang2005-02-141-1/+4
| | | | | | | | | | | | Update compiler information supported by windows. Description: Solution: Platforms tested: Misc. update:
* [svn-r10003] Purpose: Bug fixRaymond Lu2005-02-141-0/+4
| | | | | | | | | Description: At line 3564, the command H5T_bit_set(s, src.u.f.mpos, 1, FALSE) has unclear intention to me. Before I figure it out, move it to line 3590, where I think it should be. This did fix some data conversion. Platforms tested: fuss - already test it for v1.6.
* [svn-r10000] Purpose:Pedro Vicente Nunes2005-02-141-0/+28
| | | | | | | | | | | | | | bug fix Description: in 1 case when there was not a requested layout, the original chunk was not preserved Solution: Platforms tested: linux (small change) Misc. update:
* [svn-r9999] Purpose:Xiaowen Wu2005-02-141-5/+3
| | | | | | | | | | | | | | Very slight modification. Description: Remove two redundant local macros. Solution: Platforms tested: heping Misc. update:
* [svn-r9998] Leon Arber2005-02-131-6/+15
| | | | | | | | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: Fixed the error on copper where output would match, except the worker tasks are forcefuly terminated at the end. Solution: If an exit code other than 0 was returned, the parallel environment would assume that there was an error and would terminate all other tasks. Because h5repack relies on the return value of h5diff, it was necessary to return values other than 0. Fixed by having parallel runs of h5diff always return 0, whereas the return value of serial runs is unchanged. Platforms tested: copper Misc. update:
* [svn-r9996] Purpose:Quincey Koziol2005-02-121-0/+1
| | | | Update manifest with file that was accidentally removed.
* [svn-r9995] Purpose:Quincey Koziol2005-02-112-58/+207
| | | | | | | | | | | | | | New feature & bug fix Description: Allow root node to split, forming a level 2 B-tree Fix error where wrong record was being copied up to parent node for a 2 node redistribution on the "right" side of the B-tree. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Solaris 2.9 (shanti)
* [svn-r9994] Purpose:Quincey Koziol2005-02-111-0/+1
| | | | | | | | | | | Bug fix Description: Unbreak build by adding definition for NBIT macro. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Solaris 2.9 (shanti)
* [svn-r9993] Purpose:James Laird2005-02-1132-39/+33
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Arabica exhibited strange errors when linker found wrong versions of header files. This happened because include directories were given to linker in the wrong order. Solution: Move include directories from AM_CFLAGS variable to INCLUDES variable to put them before CPPFLAGS variable. Trust me, it works. This bug may also have contributed to strange errors on other platforms (kelgia?). Platforms tested: copper, sleipnir, arabica. (h5dump broke while building on arabica, but this happened in a clean checkout, too).
* [svn-r9992] Purpose:Robert E. McGrath2005-02-111-1/+1
| | | | | | | | | | Description: Solution: Platforms tested: Misc. update:
* [svn-r9991] Purpose:Robert E. McGrath2005-02-112-0/+23
| | | | | | | | | | | | | Feature Description: dumper support for nbit Solution: Platforms tested: Misc. update:
* [svn-r9989] Purpose:Robert E. McGrath2005-02-113-0/+30
| | | | | | | | | | | | | | | Feature Description: Adding support for NBIT compression to dumper Solution: Platforms tested: arabica, verbena, copper64 Misc. update:
* [svn-r9988] Purpose:James Laird2005-02-1156-724/+367
| | | | | | | | | | | | | | | | | | | | Bug fix Description: pmake (on modi4, for instance) complains about undefined variables if it is run without the -V flag, which turns those errors to warnings. Solution: Added test to configure.in to see if $MAKE will allow Makefiles with undefined variables. If not, sets -V flag in AM_MAKEFLAGS. Ensured that all custom make targets use AM_MAKEFLAGS. Also defined all variables that caused errors in top-level Makefile.am. This means that pmake can be used to build hdf5 *from the top level only*. To run make from a subdirectory, still need to use -V flag (or use make or gmake). Platforms tested: modi4, heping, copper, sleipnir
* [svn-r9987] Purpose: bug fixRaymond Lu2005-02-111-6/+10
| | | | | | | | | | | Description: For hardware conversion from integers to "long double" on AMD machine, the test failed because the size of "long double"(can be 16 bytes) is bigger than the precision(80 bits). There can be some garbage in the unused bytes in "long double". That caused failure during byte comparison. Solution: Clean these unused bytes before comparison. Platforms tested: mir and fuss; simple change
* [svn-r9986] Purpose:Quincey Koziol2005-02-116-82/+619
| | | | | | | | | | | | | | | | | | | New feature & code cleanup Description: Change some references from 'keys' to 'records', which is more correct for this implementation. Added feature to allow preemptive 3 node record redistributions (for leaves only currently) Added feature to perform preemptive 3->4 node splits (for leaves only currently) Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Solaris 2.9 (shanti) w/purify Too minor to require h5committest
* [svn-r9985] Purpose:Quincey Koziol2005-02-112-22/+333
| | | | | | | | | | | | | | | | | New feature & bug fixes Description: Checkpoint v2 B-tree code after getting preemptive 2->3 node splitting working (for leaf nodes only at the moment, however). Also, correct a problem with redistributing records that was probably causing the failures on mir in yesterday's daily tests. Ran code through purify on shanti and cleared up some warnings. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Solaris 2.9 (shanti) w/purify
* [svn-r9984] Purpose: New feature and testRaymond Lu2005-02-106-83/+863
| | | | | | | | | | Description: Added support of hardware conversion between "long double" and integers(mainly in H5Tconv.c) and some test cases(mainly in test/dtypes.c). Platforms tested: h5committest and fuss. Misc. update: RELEASE.txt
* [svn-r9983] Purpose: New FeatureRaymond Lu2005-02-101-0/+2
| | | | | | | | | | Description: Support of hardware conversion between "long double" and integers(mainly in H5Tconv.c) and test cases for it(mainly in dtypes.c) Platforms tested: h5committest and fuss Misc. update: RELEASE.txt
* [svn-r9982] Purpose:Xiaowen Wu2005-02-101-136/+152
| | | | | | | | | | | | | | | | bug fix plus minor modifications Description: The nbit filter makes a wrong assumption that function H5Z_set_local_nbit and H5Z_filter_nbit will be called together. It uses 2 local variables outside these functions to pass information from H5Z_set_local_nbit to H5Z_filter_nbit. Solution: Store the two variables in cd_values[], which can be retrieved when H5Z_filter_nbit is called independently. Platforms tested: heping, copper Misc. update:
* [svn-r9981] Purpose:Quincey Koziol2005-02-102-0/+7
| | | | | | | | | | | Code cleanup Description: Clean up some test files. Platforms tested: FreeBSD 4.11 (sleipnir) w/FORTRAN Too minor to require h5committest
* [svn-r9980] Purpose:Albert Cheng2005-02-101-6/+2
| | | | | | | | | | | | | | | | bug fix. Description: Need eval before the RUNCMD command because some machines like AIX, has RUNPARALLEL in the style as MP_PROCS=3 MP_TASKS_PER_NODE=3 poe ./a.out that throws the shell script off. Platforms tested: Tested in copper (pp) where it failed before. Tested in heping pp too. Misc. update:
* [svn-r9979] Purpose:Albert Cheng2005-02-101-1/+0
| | | | | | | | | | | | | | | | Bug fixed. Description: Heping used to have a network limit that if too many rsh connections occurred in a second, it stopped accepting connections for 30 seconds. That caused testph5diff to fail when too many mpi jobs are executed repidly. A sleep 2 was in to go around this problem. Heping's limit has been raised, thus no more need for this hack. Sleep 2 is removed. Platforms tested: Tested in heping (pp). Misc. update:
* [svn-r9978] Purpose:Xuan Bai2005-02-101-16/+16
| | | | | | | | | | | | | | | | | | | Bug fix. Description: Quincey changed "entern H5_DLL" to "H5_DLLVAR" in hdf5/src/H5FLprivate.h which caused some symbols can not be exported correctly by HDF5 DLL. Solution: Change "H5_DLLVAR" back to "extern H5_DLL". Platforms tested: Visual C++ 6.0 on Windows XP. .NET 2003 on Windows XP. Heping (Linux 2.4). (Note: I talked with Elena and Quincey about this failure. Quincey asked me to check in this fix.) Misc. update:
* [svn-r9977] Purpose:Quincey Koziol2005-02-102-34/+93
| | | | | | | | | | | | | | Update port Description: Allow FreeBSD builds to use Intel C & F90 compilers (C++ is not working yet on FreeBSD, so that'll come along later) Platforms tested: FreeBSD 4.11 (sleipnir) w/Intel C & F90 compilers Does not affect other platforms... Misc. update:
* [svn-r9976] Purpose:Xuan Bai2005-02-101-0/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | New feature and update. Description: 1. New feature: link HDF5 with Zlib 1.2.2 and Szip 2.0 DLL libraries. 2. Update: catch up HDF5 update during past weeks. Solution: 1. New feature: As now HDF5 only links with Zlib and Szip DLL libraries, only 2 environment variables are needed: Environment Variables for HDF5 on Windows Previously Now HDF5_EXT_ZLIB zlib.lib zdll.lib HDF5_EXT_SZIP szlib.lib szlibdll.lib HDF5_EXT_ZLIB_DLL c:\zlib114\dll\zlib.lib N/A HDF5_EXT_SZIP_DLL szlibdll.lib N/A Due to the above change, the following changes are made: a. hdf_dll and dsets_dll were linked with HDF5_EXT_ZLIB_DLL and HDF5_EXT_SZIP_DLL before this update. Now they are linked with HDF5_EXT_ZLIB and HDF5_EXT_SZIP. b. In hdf5/tools/dumptest.bat and repacktest.bat, HDF5_EXT_ZLIB was compared with zlib.lib and HDF5_EXT_SZIP was compared with szlib.lib to find out whether ZLIB or SZIP libraries were presented. Now HDF5_EXT_ZLIB is compared with zdll.lib and HDF5_EXT_SZIP with szlibdll.lib. 2. Update (due to change in source codes) a. Add hdf5/src/H5B2.c, H5B2cache.c, H5B2dbg.c, H5B2test.c, H5b2pkg.h, H5B2private.h, and H5B2public.h to projects hdf5 and hdf5dll. b. Replace H5TA.c and H5TA.h with H5TB.c and H5TB.h in hdf5_hl project. Platforms tested: Visual C++ 6.0/DEC Fortran 6.6c on Windows XP. .NET on Windows XP. Misc. update: installation file was updated also.
* [svn-r9974] Purpose:Xuan Bai2005-02-091-147/+53
| | | | | | | | | | | | | Update. Description: Update installation file on how to link HDF5 with Zlib 1.2.2 and Szip 2.0 DLL libraries. Solution: Platforms tested: Misc. update:
* [svn-r9971] Purpose:Quincey Koziol2005-02-098-806/+900
| | | | | | | | | | | | New feature Description: Checkpoint v2 B-tree code after getting 2 leaf record redistribution working and tested. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9970] Purpose:Quincey Koziol2005-02-091-4/+4
| | | | | | | | | | | | | | | Bug fix Description: Correct formatting error which would run some macros together if the length of the error got too large. Solution: Throw in some extra whitespace Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9969] Purpose:Leon Arber2005-02-094-5/+12
| | | | | | | | | | | | | | | | | | | Correction to previous print_manager_output bugfix Description: Although the previous bugfix did fix all the errors, it was not the correct way to fix the problem. Since the manager will only buffer output when run in parallel mode, in serial mode this function should not even be called. Solution: Wrapped print_manager_output in #define's to prevent it from being included in serial builds. Platforms tested: heping (serial + parallel) Misc. update:
* [svn-r9968] Pedro Vicente Nunes2005-02-091-7/+7
| | | | | | | | | | | | | | | | | | | | | | Purpose: bug fix Description: a string with 2 characters was declared as having size 2. changed to size 3 (+ null character) this was causing compiler warnings with g++ Solution: Platforms tested: linux free bsd (g++) Misc. update:
* [svn-r9966] Purpose: Bug fixRaymond Lu2005-02-094-28/+97
| | | | | | | | | | | | | Description: H5Tget_member_value didn't return correct value if called after H5Tenum_valueof. It's because there's a sorting on the members of enum type in H5Tenum_valueof which changed the order of members. Solution: Made a copy of original type and do sorting on it to protect the original order. Platforms tested: fuss; tested v1.6 with h5committest Misc. update: RELEASE.txt
* [svn-r9964] Purpose:Albert Cheng2005-02-091-0/+4
| | | | | | | | | | | | | | bug fix Description: g++ was not happy with missing protocols of external functions. Added print_manager_output(void) and phdiff_dismiss_workers(void) to the public declarations. Platforms tested: Tested in sleipnir (g++) and heping (serial, pp) Misc. update:
* [svn-r9962] Purpose:Quincey Koziol2005-02-083-2/+289
| | | | | | | | | | | | | | | Bug fix & code update Description: Fix error in new free-list factory routines that was causing errors on tungsten, et al. Also, checkpoint v2 B-tree code. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Linux 2.4 (tungsten) Otherwise too minor to require h5committest
* [svn-r9961] Pedro Vicente Nunes2005-02-089-9/+198
| | | | | | | | | | | | | | | | | | | | | | | Purpose: bug fix, new test file Description: h5dump was not properly displaying array indices > 3D Solution: added the same algorythm and data structure that h5diff uses to calculate the array index from a element number position Platforms tested: linux solaris Misc. update:
* [svn-r9959] Purpose: Bug fixRaymond Lu2005-02-087-34/+152
| | | | | | | | | | | | Description: For variable-length string, H5Tget_class returned H5T_STRING as its class. But H5Tdetect_class and H5Tget_member_class considered it as H5T_VLEN. This is fixed to let all these 3 functions treat it as H5T_STRING. Some test cases have been added to dtypes.c Platforms tested: heping - already tested for v1.6 with h5committest Misc. update: RELEASE.txt
* [svn-r9957] Purpose:Albert Cheng2005-02-081-2/+2
| | | | | | | | | | | | | | | | | | Bug fix. Description: print_manager_output was missing because it was compiled in only parallel mode. Solution: Made it available all the times. Platforms tested: h5committested. (testph5diff.sh failed in copper but that is a different error.) Also tested in heping, serial and pp. Misc. update:
* [svn-r9956] Purpose:Leon Arber2005-02-087-471/+533
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fixed numerous ph5diff bugs. Description: Fixed manager output printing Fixed out of order output printing Fixed test script execution problem Temporary fix for large amounts of output overflowing buffer. Solution: The manager task buffers its output. However, since the manager task never gets a print token, this output was lost. Solution: new function called print_manager_output that prints buffered output is called in places where the manager buffers its output. printf was apparently buffering output. This means that a task would sometimes print even after it had given up its print token. Added fflush() call after printf() calls, which seems to have fixed the problem. calling rsh multiple times in succession seems to overwhelm something in Linux, as it begins to refuse new connections until the old ones reset. Since each call to mpirun in the test script starts up 4 rsh sessions, the test script eventually is unable to run any further tests. Solution: Added a short delay in the testscript between successive calls to mpirun to allow old connections to reset. The 10k output buffer was of insufficient size to hold the large amounts of output generated by some of the tests. Since code to buffer to a file has not been implemented yet, a temporary fix was to increase the size of the output buffer to 50k. Platforms tested: heping Misc. update:
* [svn-r9955] Purpose:Quincey Koziol2005-02-0813-222/+610
| | | | | | | | | | | | | | New feature & bug fix Description: Allow h5debug tool to dump "test" v2 B-trees correctly. Also, fix incorrect parameter passing that was causing failures on various platforms. Platforms tested: FreeBSD 4.11 (sleipnir) AIX 5.2 (copper)
* [svn-r9952] Purpose:James Laird2005-02-072-2/+2
| | | | | | | | | | | | | | | | | Bug fix Description: Typo in /hl/fortran/src Makefile.am caused obtuse compiler complaints from some compilers (but not others). Errors were of the form: gcc: cannot specify -o with -c or -S and multiple compilations Solution: In AM_CLFAGS, missed -I before ../../hl/src. This made gcc think that we also wanted to compile /hl/src directory. Fixed error by adding -I. Platforms tested: verbena, eirene.
* [svn-r9951] Purpose: Minor bug fix.Raymond Lu2005-02-074-21/+68
| | | | | | | | | | | | | Description: The byte order for all 1-byte integer types was fixed as little-endian even on a big-endian machine. This's corrected in h5detect.c. When types are only 1 byte long, a native int is used substitute the type to detect byte order. Some tools like h5dump and h5repack are also corrected in this case. Platforms tested: fuss, copper, sol.(There're some failures from the recent configure change). Misc. update: Information in the RELEASE.txt.
* [svn-r9950] James Laird2005-02-072-4/+2
| | | | | | | | | | | | | | Purpose: Bug fix Description: Make uninstall in /fortran/testpar was trying to remove install/bin directory. Solution: Remove the extra line that was copy-pasted into Makefile.am by mistake. Oops. Platforms tested: Copper.
* [svn-r9949] Purpose:Albert Cheng2005-02-071-63/+122
| | | | | | | | | | | | | | | | | Bug fix Description: h5diff sometimes will 'exit(status)' but if it is in parallel mode, it needs to close up the workers and the MPI environment before exit(..). Solution: Created h5diff_exit() that will just exit in serial mode but does all the shutdown properly if in parallel mode. Platforms tested: tested in heping, serial and parallel. Misc. update:
* [svn-r9947] Purpose:Albert Cheng2005-02-061-0/+24
| | | | | | | | | | | | | Feature Description: Added a new function, phdiff_dismiss_workers, which tells the phdiff worker processes to end. Platforms tested: Tested in heping, serial and parallel. Misc. update:
* [svn-r9946] Purpose:James Laird2005-02-062-0/+2
| | | | | | | | | | | | | | Bug fix Description: Parallel make was having trouble in fortran/testpar directory on sol. Solution: Added a dependency to ensure that things are built in the correct order. Platforms tested: sol
* [svn-r9945] Purpose:Albert Cheng2005-02-062-48/+67
| | | | | | | | | | | | | | | Bug fix Description: h5diff_main.c contained some debug printf statment that produced unexpected output. Commented them out. testh5diff.sh: implemented code to test ph5diff tests but ph5diff has some errors that generated unexpected output. Temporary hacked to skip tests if run by daily test account. Platforms tested: Tested in heping, serial and parallel.
* [svn-r9944] Purpose:Quincey Koziol2005-02-052-47/+34
| | | | | | | | | | | Bug fix (sorta) Description: Disable btree2 testing until Monday, when I can look into the failures without a toddler on my lap. :-) Platforms tested: FreeBSD 4.11 (sleipnir)
* [svn-r9943] Purpose:James Laird2005-02-052-17/+68
| | | | | | | | | | | | | | | Bug fix Description: /fortran/testpar build breaks when making in parallel Solution: Massage depdendencies slightly to ensure that object files are built after module file. Also made sure that module file gets cleaned properly. Platforms tested: eirene
* [svn-r9941] Purpose:Quincey Koziol2005-02-052-0/+10
| | | | | | | | | | | Code cleanup Description: Clean up some testfiles that were left behind... Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
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