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* [svn-r24194] Don't add hdf5 library dependencies to lib files when ↵Larry Knox2013-09-2447-20/+113
| | | | | | --disable-sharedlib-rpath configure option is invoked. Fix for HDFFV-8276. Tested with h5committest and on hdf-duck.
* [svn-r24192] Correct test and usage of defines for cmake configureAllen Byrne2013-09-232-2/+6
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* [svn-r24190] remove comment that caused linux build warnings and correct use ↵Allen Byrne2013-09-232-40/+42
| | | | | | of cmakedefine vs define in template. Tested: local linux
* [svn-r24189] Purpose: Fixed bug HDFFV-1060Binh-Minh Ribler2013-09-2330-90/+90
| | | | | | | | Description: Changed header guards from single underscore to double underscore. Platforms tested: Linux/32 2.6 (jam) - very minor Linux/64 2.6 (koala)/PGI compilers
* [svn-r24188] Purpose: Fixed bug introduced in r24163Binh-Minh Ribler2013-09-2321-560/+996
| | | | | | | | | | | | | Description: - The failure in daily test was caused by missing initialization of member "id" in a few constructors. This is now fixed. - Added two overloaded H5Location::setComment - Improved some error reporting in H5Location - Improved error reporting in tests Platforms tested: Linux/32 2.6 (jam) SunOS 5.11 (emu) Linux/64 2.6 (koala)/PGI compilers
* [svn-r24186] Snapshot version 1.9 release 164HDF Tester2013-09-2213-26/+26
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* [svn-r24179] HDFFV-8321:Add note about changing FFLAGS to FCFLAGS in configure.Allen Byrne2013-09-201-0/+1
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* [svn-r24178] Back out the changes that cause daily test to fail r24163Binh-Minh Ribler2013-09-2017-905/+375
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* [svn-r24175] Description:Binh-Minh Ribler2013-09-201-0/+9
| | | | | | | | | | | | | | | Added the tutorial examples ./c++/examples/h5tutr_cmprss.cpp ./c++/examples/h5tutr_crtatt.cpp ./c++/examples/h5tutr_crtdat.cpp ./c++/examples/h5tutr_crtgrpar.cpp ./c++/examples/h5tutr_crtgrp.cpp ./c++/examples/h5tutr_crtgrpd.cpp ./c++/examples/h5tutr_extend.cpp ./c++/examples/h5tutr_rdwt.cpp ./c++/examples/h5tutr_subset.cpp Verified with bin/chkmanifest
* [svn-r24174] Purpose: Add examplesBinh-Minh Ribler2013-09-209-0/+1104
| | | | | | | | | Description: Added tutorial examples that Barbara made following the C tutorial examples. They will be configured for daily test. Platforms tested: Linux/32 2.6 (jam) - tested by running a script that compiled them with h5c++ and executing the examples; output are checked manually
* [svn-r24172] Position trunk/1.8 vars in similar location for comparison.Allen Byrne2013-09-191-3/+3
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* [svn-r24171] Purpose: Fix problem with gcc 4.8Neil Fortner2013-09-196-127/+128
| | | | | | | | | | | | | | Description: With optimization enabled, gcc 4.8 inserts garbage into the padding bytes of floating point types when assigning from a literal constant. This caused problems when H5detect.c scanned the bits in floating point types to determine their properties. Modified H5detect.c to scan for padding before further analyzing the type, and to ignore all information in the padding areas. Also removed code that temporarily disabled optimization. Tested: jam, koala, ostrich, platypus (h5committest)
* [svn-r24167] HDFFV-8513, HDFFV-8522 Plugin testing in h5repack, h5dump.Allen Byrne2013-09-1914-87/+130
| | | | | | | Add more usage info for UserMacros. Add new option information about the Plugin default path. Tested: local linux, jam
* [svn-r24163] Purpose: More on HDFFV-7520 and HDFFV-533Binh-Minh Ribler2013-09-1917-375/+905
| | | | | | | | | | | | Description: - Improved the changes in revisions r22836 and r23438, mainly on the wrappers of reference, dereference, get region, and set/getcomment. - Added more tests. Platforms tested: Linux/32 2.6 (jam) SunOS 5.11 (emu) Linux/ppc64 (ostrich)
* [svn-r24162] backing out a commit that includes wrong filesBinh-Minh Ribler2013-09-1917-907/+375
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* [svn-r24161] Purpose: More on HDFFV-7520 and HDFFV-533Binh-Minh Ribler2013-09-1917-375/+907
| | | | | | | | | | | Description: - Completed the changes in revisions r22836 and r23438 with improvement on wrappers such as reference, dereference, get region, and set/getcomment. - Added more tests. Platforms tested: Linux/32 2.6 (jam) SunOS 5.11 (emu) Linux/ppc64 (ostrich)
* [svn-r24157] Add back STGZ packaging - .sh compressed packageAllen Byrne2013-09-181-0/+1
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* [svn-r24143] Description:Binh-Minh Ribler2013-09-1626-32/+90
| | | | | | | Fixed comments, documentation, and mis-matched DOXYGEN_SHOULD_SKIP_THIS pairs. Platforms tested: Linux/32 2.6 (jam) Regenerated and verified generated documentation.
* [svn-r24142] Purpose: Fix bug in testsBinh-Minh Ribler2013-09-152-4/+10
| | | | | | | | | | | | | | Description: - Passing the c_str() of an std string into a C function caused failure on OpenVMS. Added a work around using temporary string. (th5s.cpp) - Passing incorrect file access property list caused test_datasize() to fail. Fixed. - Close a group in test_dset, before the file can be properly closed. This should fix the problem on OpenVMS. Platforms tested: Linux/32 2.6 (jam) SunOS 5.11 (emu) Linux/ppc64 (ostrich)
* [svn-r24140] Purpose: Remove problematic abandonment of error stackNeil Fortner2013-09-133-36/+41
| | | | | | | | | | | | | | | Description: H5Fis_hdf5 uses H5F_locate_signature to check if the file is hdf5. If it does not locate the signature, H5F_locate_signature would issue an error and return HADDR_UNDEF. H5Fis_hdf5 does not consider it an error if the signature is not found, so it does not issue an error or clear the stack. The filled stack could then cause issues later on. Changed H5F_locate_signature to return herr_t, not issue an error if the signature is not found, and added a parameter for a pointer to the signature address that the function fills in. Tested: jam, koala, ostrich (h5committest)
* [svn-r24139] Remove "will never be exectued" warnings in H5detect.cNeil Fortner2013-09-131-42/+74
| | | | Tested: jam, koala, ostrich (h5committest)
* [svn-r24138] Cast constants to specified type. Allen Byrne2013-09-136-23/+24
| | | | | | | | Cast smaller vars to larger type. Cast calculation result to correct type. Changed int member to hbool_t Tested: local linux
* [svn-r24137] Cast constants to specified type. Allen Byrne2013-09-131-35/+35
| | | | | | | Cast smaller vars to larger type. Cast calculation result to correct type. Tested: local linux
* [svn-r24136] Add base set of warnings for gccAllen Byrne2013-09-131-0/+1
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* [svn-r24128] Change option name for WDTPAllen Byrne2013-09-122-7/+7
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* [svn-r24127] Comment out bundle packingAllen Byrne2013-09-121-1/+1
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* [svn-r24126] Correct mac pinifo.list varsAllen Byrne2013-09-122-37/+35
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* [svn-r24124] HDFFV-8345: Changed usage txt to use dsetN instead ofletters ↵Allen Byrne2013-09-112-79/+42
| | | | | | for objects in examples. Tested: local linux
* [svn-r24120] HDFFV-8345: plugin test properly checks static-exec result to ↵Allen Byrne2013-09-107-77/+37
| | | | | | include test. Tested: jam
* [svn-r24119] Add new tests to memcheck ignore listAllen Byrne2013-09-101-0/+2
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* [svn-r24118] Comment out test until configure sets conditional correctlyAllen Byrne2013-09-091-1/+1
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* [svn-r24116] Correct indentation and create single exit point.Allen Byrne2013-09-094-3426/+3270
| | | | Tested : local linux
* [svn-r24115] Reduce warnings for conversions of different widths.Larry Knox2013-09-063-571/+571
| | | | h5committested on jam, ostrich, koala, and platypus.
* [svn-r24114] Reverting the changes in r24113 for now because they break ↵Larry Knox2013-09-0621-79/+2
| | | | | | parallel make fortran. The changes aren't incorrect, but more work in needed on dependencies and also for enable-parallel. Reverted to r24112.
* [svn-r24113] Description:Quincey Koziol2013-09-0621-2/+79
| | | | | | | | Reduce warnings w/gfortran in FORTRAN build by declaring interface for utility test routines. Tested on: Mac OSX/64 10.8.4 (amazon) w/gcc/g++/gfortran 4.8
* [svn-r24111] Description:Quincey Koziol2013-09-061-10/+5
| | | | | | | Restrict GCC diagnostic pragmas to only gcc 4.6+ Tested on: Mac OSX/64 10.8.4 (amazon) w/gcc 4.8
* [svn-r24110] Add new h5repack infoAllen Byrne2013-09-061-0/+4
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* [svn-r24109] Correct cygwin infoAllen Byrne2013-09-061-11/+12
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* [svn-r24105] Correct filename extensionAllen Byrne2013-09-061-1/+1
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* [svn-r24104] HDFFV-8345: add User Defined filters to h5repack.Allen Byrne2013-09-0628-571/+2273
| | | | | | Reviewed in H5T-61 Tested: local linux - cmake and autotools
* [svn-r24103] Force NO optimization of H5detect.cAllen Byrne2013-09-062-2/+2
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* [svn-r24101] Description:Quincey Koziol2013-09-0515-133/+225
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Clean up warnings, enable new compiler warning flag(s) and bring back changes from Coverity branch: r20813: Remove the dead code as listed for coverity bug #1722. h5committested. r20814: Issue 69: Check return value and throw error if negative return. Also free datatype id on error r20815: Use HDstrncpy. --gh r20816: Replaced one last HDstrcat call with HDstrncat to resolve coverity issue 832. r20817: Use HDstrncpy and HDstrncat. --gh r20818: Purpose: Fix valgrind issues with h5jam Description: Modified h5jam to free strings strdup'd in parse_command_line before exit. Note that they may still not be freed in case of error, due to the widespread use of exit(). r20819: Issue 80: change loop to use int as loop index. r20820: Maintenance: Fixed the bug found by coverity CID 788 There were two problems with this function: 1) it tried to unnecessary free NULL pointer 2) it tried to allocate c_name buffer that is done by H5Pget_class_name Tested on: Mac OSX 10.8.4 (amazon) w/gcc 4.8.1, C++ & FORTRAN (too minor to require h5committest)
* [svn-r24098] Issue 8500 - H5detect.c has trouble to find info for long ↵Raymond Lu2013-09-042-2/+5
| | | | | | | | | double with GCC 4.8. A user in the forum found the problem in H5detect.c (uninitialized buffer) and provided the solution. I checked it in yesterday. But it turned out to be a false fix. So I'm back it out. Tested on jam - reverse of changes.
* [svn-r24097] Correct indentationAllen Byrne2013-09-041-1/+1
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* [svn-r24095] Issue 8500 - H5detect.c has trouble to find info for long ↵Raymond Lu2013-09-032-5/+2
| | | | | | | | double with GCC 4.8. A user in the forum found the problem in H5detect.c (uninitialized buffer) and provided the solution. Allen and I verified it. Tested with h5committest and CMake on jam, koala, ostrich, playtus, and Allen's virtual machine.
* [svn-r24092] Snapshot version 1.9 release 163HDF Tester2013-09-0113-26/+26
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* [svn-r24087] Rename the private H5RC (reference count) module to H5UC (Use ↵Mohamad Chaarawi2013-08-3020-103/+109
| | | | | | | | | | | | Count). This is needed to avoid a conflict with the Read Context object to be introduced in another Project. No impact on users, since this is a private module, and low for developers as the RC module use is very sparse in the library. Tested with h5committest.
* [svn-r24078] Correct name of windows shared librariesAllen Byrne2013-08-271-2/+2
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* [svn-r24077] Updated -help output for compile scripts for changing default ↵Larry Knox2013-08-273-11/+19
| | | | | | from -noshlib to -shlib when hdf5 is built without static libraries (--disable-static). Tested with h5committest on jam, koala, ostrich and platypus.
* [svn-r24070] Fix typo in flags optionsAllen Byrne2013-08-261-3/+13
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