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* Remove old szip lineAllen Byrne2020-04-231-1/+0
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-04-2332-160/+553
|\ | | | | | | | | | | * commit '1db039d1beee05d7349e153cef4cf642c907cc1e': Fixed h5diff command-line parameters to use 1 and 2 instead of src and dst. Added VOL command-line options to (p)h5diff, h5ls, h5dump, and h5mkgrp.
| * Merge pull request #2532 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-04-2332-160/+553
| |\ | | | | | | | | | | | | | | | | | | | | | to develop * commit '785bd0975ba13c3033820d0fc809da963fcd54ca': Fixed h5diff command-line parameters to use 1 and 2 instead of src and dst. Added VOL command-line options to (p)h5diff, h5ls, h5dump, and h5mkgrp.
| | * Fixed h5diff command-line parameters to use 1 and 2 instead of srcDana Robinson2020-04-2213-151/+151
| | | | | | | | | | | | and dst.
| | * Added VOL command-line options to (p)h5diff, h5ls, h5dump, and h5mkgrp.Dana Robinson2020-04-2132-147/+540
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* | | OESS-65 add option to use AEC library in place of SZipAllen Byrne2020-04-228-184/+197
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* | Merge pull request #2530 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-04-217-218/+215
|\ \ | |/ | | | | | | | | | | to develop * commit 'c6097935d5be4c3750b9bf9167783ad28158905b': Separated VFD and VOL parameters in tools.
| * Separated VFD and VOL parameters in tools.Dana Robinson2020-04-217-218/+215
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* | Merge pull request #2527 in HDFFV/hdf5 from trim_whitespace to developQuincey Koziol2020-04-21374-7336/+7336
|\ \ | |/ |/| | | | | * commit '9e5dbf69062d4d2cb40ba8f68edb355477fc9b67': Trim trailing whitespace
| * Trim trailing whitespaceQuincey Koziol2020-04-20374-7336/+7336
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* Merge pull request #2522 in HDFFV/hdf5 from ↵Dana Robinson2020-04-171-3/+5
|\ | | | | | | | | | | | | ~DEROBINS/hdf5_der:new_vfd_cleanup to develop * commit '384693d8e5917011c906cdca901baf1519d0ff87': Fixed some minor cmp callback bugs and cleaned warnings.
| * Fixed some minor cmp callback bugs and cleaned warnings.Dana Robinson2020-04-171-3/+5
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* Merge pull request #2521 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-04-175-8/+13
|\ | | | | | | | | | | | | to develop * commit '9ecca22dd1852145810280e8c54aa6b0ab26b604': Fixed problems with S3 and HDFS VFDs. * Updated info struct parameter to correct info_string * Fixed Makefile.am where the S3 VFD was listed twice, causing duplicated symbols errors.
| * Fixed problems with S3 and HDFS VFDs.Dana Robinson2020-04-175-8/+13
|/ | | | | | * Updated info struct parameter to correct info_string * Fixed Makefile.am where the S3 VFD was listed twice, causing duplicated symbols errors.
* Merge pull request #2511 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-04-141-42/+47
|\ | | | | | | | | * commit '602e56ea12208cd4a4b23b0f9a3f7a53aceb1b48': TRILAB-192 version of std=f2008 special check
| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-04-144-29/+29
| |\ | |/ |/| | | | | | | * commit 'da565fba7b37c0e6806adab1f59416bb0ac9041e': Update h5repack long arguments for id-->value changes. Changed identifiers and command-line options from "id" to "value" in tools code to be in agreement with H5VL API terminology.
* | Merge pull request #2510 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-04-144-29/+29
|\ \ | | | | | | | | | | | | | | | | | | | | | to develop * commit '2188e7d731199cac08c6e6150ccd2fb43227ec32': Update h5repack long arguments for id-->value changes. Changed identifiers and command-line options from "id" to "value" in tools code to be in agreement with H5VL API terminology.
| * | Update h5repack long arguments for id-->value changes.Dana Robinson2020-04-141-2/+2
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| * | Changed identifiers and command-line options from "id" to "value" in toolsDana Robinson2020-04-144-27/+27
|/ / | | | | | | code to be in agreement with H5VL API terminology.
| * TRILAB-192 version of std=f2008 special checkAllen Byrne2020-04-141-42/+47
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* Merge pull request #2509 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-04-131-3/+3
|\ | | | | | | | | * commit 'ef70c1695d0cccb4ba379abe3969ac2fec0d4ebe': Fix shadowed type
| * Fix shadowed typeAllen Byrne2020-04-131-3/+3
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* Merge pull request #2508 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-04-135-89/+200
|\ | | | | | | | | * commit 'e68848f397eb66ffbec86ab59b7754c48281e0b3': TRILAB-192 - cleanup edits and match CMake CXX to autotools
| * TRILAB-192 - cleanup edits and match CMake CXX to autotoolsAllen Byrne2020-04-135-89/+200
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* Merge pull request #2452 in HDFFV/hdf5 from ↵Jake Smith2020-04-1145-568/+11593
|\ | | | | | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:feature/vfd_splitter_mirror_a to develop Add Splitter VFD and Mirror VFD. * commit '664fc6af47e369152727ff66d68d8532feb0e210': Add enable-mirror-vfd flag to configure options. Tidying of Mirror VFD. Add function header comment for `mirror_writer:run_writer()`. Add Splitter VFD to library.
| * Add enable-mirror-vfd flag to configure options.Jacob Smith2020-04-082-17/+37
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| * Merge branch 'develop' of ↵Jacob Smith2020-04-07167-3227/+4910
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into feature/vfd_splitter_mirror_a
| * | Tidying of Mirror VFD.Jacob Smith2020-04-0711-56/+128
| | | | | | | | | | | | | | | | | | | | | * Rename server-stop utility to mirror_server_stop. * Remove external dependency on bzero(). * Modify test/use_common to use only the public API. * Rename internal bitswap macro to follow convention.
| * | Add function header comment for `mirror_writer:run_writer()`.Jacob Smith2020-03-161-1/+17
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| * | Add Splitter VFD to library.Jacob Smith2020-03-1345-565/+11482
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * "Simultaneous and equivalent" Read-Write and Write-Only channels for file I/O. * Only supports drivers with the H5FD_FEAT_DEFAULT_VFD_COMPATIBLE flag for now, preventing issues with multi-file drivers. Add Mirror VFD to library. * Write-only operations over a network. * Uses TCP/IP sockets. * Server and auxiliary server-shutdown programs provided in a new directory, `utils/mirror_vfd`. * Automated testing via loopback ("remote" of localhost).
* | | Merge pull request #2507 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-04-101-12/+12
|\ \ \ | | | | | | | | | | | | | | | | * commit 'eedda6eb070c6f6bc58776468b57f4921f06983a': Add missing " and update function calls incorrectly named load_gcc_arguments.
| * | | Add missing " and update function calls incorrectly namedLarry Knox2020-04-101-12/+12
|/ / / | | | | | | | | | load_gcc_arguments.
* | | Merge pull request #2498 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developLarry Knox2020-04-093-1206/+1129
|\ \ \ | | | | | | | | | | | | | | | | * commit '3ec77a2d9ad8ba42dde93942727c1f4ed83212f6': TRILAB-192 update LTparse files
| * | | TRILAB-192 update LTparse filesAllen Byrne2020-04-073-1206/+1129
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* | | Merge pull request #2505 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2020-04-091-0/+6
|\ \ \ | | | | | | | | | | | | | | | | * commit '65a704167c83c3fa8d5cc05e4ac7e032a051151c': Fix memory leak in t_span_tree.c test
| * \ \ Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~jhenderson/hdf5 ↵Jordan Henderson2020-04-0916-96/+129
| |\ \ \ | |/ / / |/| | | | | | | into develop
* | | | Merge pull request #2504 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-04-096-33/+48
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit 'd86089f583382c0379f446a5e4d552599ed5b3b4': Added support for passing connector info strings via the command line to the tools internals.
| * | | | Added support for passing connector info strings via the commandDana Robinson2020-04-096-33/+48
| | | | | | | | | | | | | | | | | | | | line to the tools internals.
* | | | | Merge pull request #2502 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-04-096-44/+61
|\ \ \ \ \ | |/ / / / | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '35c0d5cdfcfaa84f59e1c596ba1ccaeb28e3d83d': Fix for passthrough VOL not passing tools tests due to incorrect optional callback queries.
| * | | | Fix for passthrough VOL not passing tools tests due to incorrectDana Robinson2020-04-086-44/+61
| | |/ / | |/| | | | | | | | | | optional callback queries.
* | | | Merge pull request #2503 in HDFFV/hdf5 from ↵Larry Knox2020-04-091-11/+11
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~LRKNOX/hdf5_lrk:Wflags_changes_develop_merge to develop * commit 'fffe3b8dbd90a38296be866bae1c66d90664dd14': Update all load_gcc_arguments to load_gnu_arguments. Fixes TRILAB-212.
| * | | | Update all load_gcc_arguments to load_gnu_arguments.Larry Knox2020-04-091-11/+11
| | | | | | | | | | | | | | | | | | | | Fixes TRILAB-212.
* | | | | Merge pull request #2496 in HDFFV/hdf5 from ↵Vailin Choi2020-04-081-3/+3
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/dtype_close_on_error to develop * commit 'db9155c2f34bbf77a1cda01904805fe5c993b6d5': Fix according to PR feedback. Fix an error in previous merge: should use NULL instead of FAIL.
| * | | | | Fix according to PR feedback.vchoi2020-04-071-1/+1
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| * | | | | Fix an error in previous merge: should use NULL instead of FAIL.vchoi2020-04-071-2/+2
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| * | | | | Merge pull request #29 in ~VCHOI/my_third_fork from develop to ↵Vailin Choi2020-04-06124-1583/+3362
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | bugfix/dtype_close_on_error * commit 'f6514c35ea3786206a8db73e1cad8fce8fe6a715': (48 commits) Updated test ddl files so CMake passes after h5dump failures. Narrowed the scope of ISO_C_BINDING with ONLY additions Skip testing of passthrough VOL connector in a Family File tools test Restore previous tools library driver name behavior with passthrough VOL connector Updated tools dump output when dataset offset is undefined. Fixed unnecessary H5R casts in the tools that were raising warnings. Added checks for native optional call support in some of the tools. Changed default dataset shared struct to initialize hid_t IDs to H5I_INVALID_HID. Correct extra flags Modifications based on PR review feedback. Minor renaming in the tools code. Misc changes for h5dump VOL changes. Fix for HDFFV-11065. Fix latent bug in h5repack options file reading Add 'enable-error-stack' option to h5format_convert TRILAB-192 remove comment Minor renaming in h5dump (addr --> token) TRILAB-192 add comparable clang flags Fix some missing symbols issues in tools library A few small tweaks to the tools from review Replace usage of some standard library functions with HD- versions ...
* | \ \ \ \ \ Merge pull request #2501 in HDFFV/hdf5 from ↵Larry Knox2020-04-083-5/+6
|\ \ \ \ \ \ \ | | |_|/ / / / | |/| | / / / | |_|_|/ / / |/| | | | | | | | | | | | | | | | | | | | | | | ~LRKNOX/hdf5_lrk:Wflags_changes_develop_merge to develop * commit 'e6cd19937b0e5fe5b49f7e88b08f15305e0b5af1': Squashed commit of the following: Add \d to list of characters allowed after '-' in versions.
| * | | | | Squashed commit of the following:Larry Knox2020-04-082-4/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | commit 8963c3bf756f8f8ec21beea9bd29a767e77675a8 Author: Larry Knox <lrknox@hdfgroup.org> Date: Wed Apr 8 16:52:27 2020 -0500 Commit changes to gnu-cxxflags to remove unmatched " and to gnu-fflags to not add C warnings flags to H5_FCFLAGS.
| * | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Larry Knox2020-04-08115-3004/+4138
| |\ \ \ \ \ | |/ / / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'b27a20f8c0e286ea7c2836605632ea2ee5522d03': (59 commits) Hide Frortran directive warnings Updated test ddl files so CMake passes after h5dump failures. Remove flag from gfort-general in gfort-5, add /EHsc to Win C++ Update printf pointer syntax and revert fortran to f2003 Reduce window fortran standard to f90 Minor updates and fix settings for fortran flags Update intel flags Narrowed the scope of ISO_C_BINDING with ONLY additions Fix missing endif Correct improper file move Move intel warnings to subfolder, update autotools files Corrected note Remove overzealous additions Correct whitespace in flags, force list mode Flag construction must be after compiler detection TRILAB-192 add c++ and fortran warnings build systems one file Skip testing of passthrough VOL connector in a Family File tools test Update release note for CMake warnings Restore previous tools library driver name behavior with passthrough VOL connector Add missing header include ...
| * | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Larry Knox2020-03-2460-306/+855
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'd3ef866a2963ce93d0b95184534a70849b6fa11d': Revise API for H5get_alloc_stats() to take a struct instead of separate values. Move the GNU warnings configuration under config/gnu-warnings/ and trim the filename prefixes. Update config/gnu-flags to suit. Fixed the RELEASE.txt note for HDFFV-11057 Fix shutdown errors when using the HDF5_VOL_CONNECTOR environment variable to set a dynamically loaded plugin as the default VOL connector. Fixes HDFFV-11057 Fix threadsafe for new test Fix issues when deserializing point/all/none selection with version beyond the library's supported version: (1) Verify the decoded version before proceeding further with deserialization (2) Close the dataspace if errors occurred after opening the dataspace Very minor comment change in H5VLconnector.h. Add routines to query the library's free list sizes and allocation stats. By default, demote warnings promoted to errors back to warnings. Incorporate the H5_ECFLAGS into the library CFLAGS. Now a bunch of errors will occur. Next commit will demote the warnings promoted to errors back to warnings again. Break out warnings into more files that autoconf and CMake can share. This change temporarily disables the warnings that were promoted to errors, but I will add those warnings back as warnings, not errors, in the next commit. Avoid a crash, don't check if we're flushing when the file is closing: there's no need to check if the metadata cache is flushing if we already know the file is closing, because the condition we rely on is "closing OR flushing." Further, the cache may have already gone away, so sometimes calling into the cache to see if it's flushing will crash the program.
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