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* [svn-r20778] I changed the macro definition of DIR_SEPC and DIR_SEPS to ']' ↵Raymond Lu2011-05-093-8/+7
| | | | | | | | for OpenVMS in H5private.h. Strictly speaking, it isn't the directory seperator. But it can simplify the code and make the H5L_build_name function cleaner. Tested on jam because the change only affects VMS.
* [svn-r20776] Refactor print_data_region_blocks/ponts to remove context ↵Allen Byrne2011-05-091-44/+54
| | | | | | passed in by value. The print functions needed an independent context with only the current indent level passed in by argument. Also synched the two routines logical flows and corrected a mem_space error. Tested: local linux
* [svn-r20771] Problem:Albert Cheng2011-05-077-98/+184
| | | | | | | | | | | | | | | | | | | | | | | | | | Test scripts sometimes need to filter some system-specific messages from the actual output so that it can match the correct expected output. These filtering functions, ususally called "STDOUT_FILTER()" and "STDERR_FILTER()" were being repeated in individual test scripts. This becomes a maintenance problem and is error prone. Solution: Extract the two filter functions code to bin/output_filter.sh and then each test script sources it in. This allows reuse of coding and is much easier to maintain and to add new filtering. Tested: LLNL Zeus (linux64 cluster) and Dawndev (Blue-Gene cluster), both for serial mode only. --This line, and those below, will be ignored-- M tools/misc/testh5mkgrp.sh M tools/h5dump/testh5dump.sh.in M tools/h5diff/testh5diff.sh M tools/h5copy/testh5copy.sh M tools/h5ls/testh5ls.sh.in M MANIFEST A bin/output_filter.sh
* [svn-r20767] Purpose:Jonathan Kim2011-05-067-47/+116
| | | | | | | | | | | | HDFFV-5928 - GMQS: h5diff problem and improvement on comparsing the same objects Description: Improved performance by eliminating duplicated action for getting object information in half from the previous fixe when comparing group vs group. This is addition to the previous commit r20676. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), cmake
* [svn-r20759] I commented out 2 test cases using H5_CANNOT_OPEN_TWICE because ↵Raymond Lu2011-05-051-2/+4
| | | | | | | | they open the same file twice. OpenVMS can't do it. Other systems still run them. Tested on jam. Simple change.
* [svn-r20756] Fixes h5diff test failure on BE systems.Dana Robinson2011-05-053-4/+11
| | | | | | | | | | | | | | | H5Dread() produces different output for invalid enum type values on systems of different endiannes. On BE systems, it always emits -1. On LE systems, the invalid value is emitted. This difference caused the h5diff test to fail since it tests to see if different invalid enum values are reported as different (on BE systems they are not since -1 == -1). This fix removes the "invalid vs. different invalid" test while we fix the library bug. HDFFV-7527 will be reopened in JIRA until the full test passes. Tested on: jam, heiwa, linew
* [svn-r20752] Windows does not have snprintf, need to use HDsnprintf.Allen Byrne2011-05-051-3/+3
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* [svn-r20725] Add overlooked changes from part of coverity fixAllen Byrne2011-05-042-8/+15
| | | | Tested: local linux
* [svn-r20724] Purpose: Fix a bug in h5diff when enum values are compared that doDana Robinson2011-05-046-2/+138
| | | | | | | | | | | | | | | | | not represent a valid enum value. Description: The h5diff code compares enum values by converting them to strings and then comparing them. When the enum value is out of range and can't be converted to an enum string representation, the comparison was skipped. The code now flags differences when one of the two enum values is out of range (two out of range values are compared in memory). A test has been added to the tools test script. This fixes JIRA HDFFV-7527 Tested on: jam, koala, heiwa (h5committest)
* [svn-r20721] Refactor ext lib import and install.Allen Byrne2011-05-043-12/+31
| | | | Add SOVERSION for linux
* [svn-r20720] Merge changes to scripts to run installed examples from hdf5 ↵Larry Knox2011-05-047-14/+14
| | | | | | | 1.8.7 r 20718. The default prefix in the scripts will use the compile scripts in the installed bin directory.
* [svn-r20717] Refactor ext lib import and install.Allen Byrne2011-05-045-50/+118
| | | | | | Change case of tools subtests to not conflict with tools tests. Tested: windows, local linux
* [svn-r20715] Remove Packed Bits if block in testsAllen Byrne2011-05-031-5/+1
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* [svn-r20713] Packed Bits Merge:Allen Byrne2011-05-0323-2284/+2326
| | | | | | | | | removed option defines and #ifdef/#endif refactored all printf to HDfprintf in h5dump.c formatted and indention improvements synched with 1.8 branch Tested: local linux
* [svn-r20711] I added efc.c to the compile list.Raymond Lu2011-05-031-0/+6
| | | | Not tested yet.
* [svn-r20707] Added comments to the H5F_mem_t enumeration in H5Fpublic.h and ↵Dana Robinson2011-05-022-22/+35
| | | | the corresponding flavors[] array in the log VFD code.
* [svn-r20702] I added efc.c to the test list.Raymond Lu2011-05-021-0/+5
| | | | Not tested yet.
* [svn-r20700] I added H5Fefc.c to the compile list.Raymond Lu2011-05-021-2/+2
| | | | Not tested yet.
* [svn-r20694] Add description for new "external_open_twice" test.Neil Fortner2011-05-021-1/+2
| | | | Tested: jam
* [svn-r20691] Purpose: Fix problem exposed by external link cacheNeil Fortner2011-05-024-4/+262
| | | | | | | | | | | | | Description: When closing an object that had two open id's, the library would previously fail to account for the status of the "holding_file" field, potentially causing the file's "nopen_objs" field to become inconsistent. This caused problems when opening the same object twice through an external link using th external file cache. Modified the library to properly account for the status of the "holding_file" field when closing an object id, even when the underlying "shared" object isn't closed. Tested: jam, koala, heiwa (h5committest)
* [svn-r20689] Changed compiler name from xlf/mpxlf_r to xlf90/mpxlf90_r to avoidAlbert Cheng2011-04-291-2/+2
| | | | | misunderstanding. xlf/mpxlf_r are actually Fortran 77 compilers. HDF5 requires Fortran 90 or higher.
* [svn-r20686] Added "xlc_r" as a recognized XL compilers.Albert Cheng2011-04-291-1/+1
| | | | | | Tested: NCSA BP AIX system. No need of h5committest because the changes affect AIX systems only.
* [svn-r20677] Merge packed bits option from 1.8 branch to trunk. CMake only. ↵Allen Byrne2011-04-2965-15/+4814
| | | | | | Autotools merge to come. Tested: local Linux
* [svn-r20676] Purpose:Jonathan Kim2011-04-2914-57/+192
| | | | | | | | | | | | | | | | - HDFFV-5928 - GMQS: h5diff problem and improvement on comparsing the same objects Description: Fixed: 1) adding h5tools_is_obj_same() function to check if two given IDs or paths point to the same object. This function can be very useful for other tools and applications. 2) using h5tools_is_obj_same() at h5diff() and diff() in h5diff.c. If two paths point to the same object, there is no need to check the details of the object since we know there is no difference. The fix will increase the performance by skipping the content comparison. It also fixed the problem of reporting difference for some cases of comparing the same file, e.g. empty files or files with incomparable objects the same file. Test update: Updat prvious test cases (171, 172, 530) affected by this fix, so they still perfrom originally intended testing without bypassing. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), cmake
* [svn-r20673] Eliminate memory buffer errors, Allen Byrne2011-04-282-160/+164
| | | | | overhead - add free to successful path. zip_perf - filename handling needed inits to NULL and free
* [svn-r20670] Fixed file name handling with char pointer incorrectly causing ↵Jonathan Kim2011-04-281-4/+5
| | | | | | crash. (Reviewed by ADB)
* [svn-r20669] Add test_configuration settingAllen Byrne2011-04-281-0/+2
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* [svn-r20666] Bug fix: VMS has trouble to deal with absolute path. I changed ↵Raymond Lu2011-04-282-1/+5
| | | | | | | | dtypes.c to use the file name only. I also updated the current directory path in vms/test/H5srcdir_str.h. Tested on jam and OpenVMS.
* [svn-r20665] Remove extraneous memcheck parametersAllen Byrne2011-04-281-4/+0
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* [svn-r20658] Description:Quincey Koziol2011-04-2831-152/+119
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring code contribution from John Biddiscombe into trunk, according to IP assignment #002 (on file). Checkin message from John is: This patch includes the changes necessary to compile a Virtual File Driver outside of the main hdf5 build and still have it link against the hdf5 core and work correctly at run-time. Certain MPI-IO related VFD checks were hard-coded in the hdf5 source and so it was not possible to extend the functionality to new drivers. Removed IS_H5FD_MPI macros and replaced with H5F_HAS_FEATURE calls with new keys, H5FD_FEAT_HAS_MPI and H5FD_FEAT_ALLOCATE_EARLY. Change H5FD cleanup (term_interface) so that file drivers call terminate when their class types are deleted instead of explicitly being called from the finalization code. Move the terminate call out of H5I and put it into the FD class_free call. Remove the now obsolete check of handles after cleaning types at termination time. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
| * [svn-r20650] Description:Quincey Koziol2011-04-261-1/+1
| | | | | | | | | | | | | | | | | | Fix spelling error: FUNC_ENTER_NOAPI_NOFUNC_NONIT -> FUNC_ENTER_NOAPI_NOINIT_NOFUNC Tested on: FreeBSD/32 8.2 (loyalty) FreeBSD/64 8.2 (loyalty)
| * [svn-r20648] Description:Quincey Koziol2011-04-261-1/+1
| | | | | | | | | | | | | | | | | | Correct spelling error in macro. (FUNC_ENTER_NOAPI_NOFUNC_NOINIT -> FUNC_ENTER_NOAPI_NOINIT_NOFUNC) Tested on: Eyeballed only. (h5committest not required for this branch)
| * [svn-r20588] Description:Quincey Koziol2011-04-2130-129/+98
| | | | | | | | | | | | | | | | | | Clean up code a bit, move new "terminate" VFD callback to new position in H5FD_class_t struct. Tested on: Mac OS X/32 10.6.7 (amazon) w/debug & production (h5committest not required on this branch)
| * [svn-r20587] Description:Quincey Koziol2011-04-2119-50/+48
| | | | | | | | | | | | | | | | Initial commit of John Biddescomb's VFD & MPI tweaks. Tested on: None (yet) (h5committest not required for this branch)
* | [svn-r20657] Description:Quincey Koziol2011-04-282-36/+36
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Correct check for pthreads routine from pthread_join() to pthread_self() as intended. Tested on FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
* | [svn-r20652] Description:Quincey Koziol2011-04-263-1/+59
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Teach the tracing script & routines about the 'unsigned long' and 'unsigned long long' types, so that the H5Pset_fapl_log() API routine gets tracing information correct. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.6 (amazon) in debug mode Mac OS X/32 10.6.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.6 (amazon) w/parallel, in debug mode
* | [svn-r20651] Description:Quincey Koziol2011-04-262-36/+36
| | | | | | | | | | | | | | | | | | | | Switch from using 'pthread_create' to 'pthread_self' when trying to detect the pthread library, so that the Intel C compiler is happier with the prototype. Tested on: Linux/64 2.6 (koala) w/Intel C (h5committested on duty, jam & linew)
* | [svn-r20646] Description:Quincey Koziol2011-04-262-15/+13
| | | | | | | | | | | | | | | | | | | | Small improvement to the core VFD's error reporting. Update FreeBSD information Tested on: FreeBSD/32 8.2 (loyalty) (too minor to require h5committest)
* | [svn-r20641] Add CPack overrides for NSIS install paths. Install for ↵Allen Byrne2011-04-264-40/+1990
| | | | | | | | | | | | products are: HDF Group/Product/Version Tested: windows , local linux
* | [svn-r20640] Remove export from "export LD_LIBRARY_PATH=${LL_PATH}" in ↵Larry Knox2011-04-266-19/+17
| | | | | | | | | | | | | | | | examples and hl/examples Makefiles. "export" breaks make install in Daily Tests on FreeBSD machines and isn't missed elsewhere. Tested on amani, freedom, jam, heiwa, and loyalty.
* | [svn-r20639] Add missing entry for "Bug HDFFV-4358"Jonathan Kim2011-04-261-0/+5
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* | [svn-r20635] Windows needs timeout at 3600Allen Byrne2011-04-251-2/+2
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* | [svn-r20627] Add dependency of t_pflush2 on t_pflush1Allen Byrne2011-04-251-0/+2
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* | [svn-r20626] Albert's test on bp reveals that the dumper had assertion ↵Raymond Lu2011-04-252-38/+46
| | | | | | | | | | | | | | | | failure when it tried to display empty attribute data. I added a check for empty attribute in h5dump.c. I also added a check for empty dataset in tools/lib/h5tools.c. Tested on jam. But I tested the same changes in 1.8 on jam, linew, and amani.
* | [svn-r20610] OpenVMS complainted about a test case in th5o.c which opened ↵Raymond Lu2011-04-222-0/+6
| | | | | | | | | | | | the same file twice. VMS doesn't allow it. I used the macro H5_CANNOT_OPEN_TWICE to skip the test case. In th5s.c, I created an attribute but fogot to close it in the test case for zero dimension size. Tested on jam. But I haven't tested on OpenVMS yet.
* | [svn-r20600] Purpose:Jonathan Kim2011-04-221-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | HDFFV-5948 - CHICAGO: Tools - implement missing external link test cases Description: Correct mistake in cmake script from previous commit r20595. Add three test cases for h5dump and h5ls. - h5ls: external link to soft link with follow symlink. - h5dump: external link to soft link with follow symlink. - h5ls: external link to soft link without follow symlink. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* | [svn-r20596] Add missing library suffix to ext lib install listAllen Byrne2011-04-221-1/+1
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* | [svn-r20595] Purpose:Jonathan Kim2011-04-2113-0/+62
| | | | | | | | | | | | | | | | | | | | | | | | | | HDFFV-5948 - CHICAGO: Tools - implement missing external link test cases Description: Add three test cases for h5dump and h5ls. - h5ls: external link to soft link with follow symlink. - h5dump: external link to soft link with follow symlink. - h5ls: external link to soft link without follow symlink. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* | [svn-r20590] On windows the ext libs did not work for cpack process. Changed ↵Allen Byrne2011-04-212-66/+26
|/ | | | ext lib handling to get the correct path. Needs more work to remove the the pre-install copying.
* [svn-r20584] I updated it for 2 new data files in h5diff/testfiles.Raymond Lu2011-04-201-1/+2
| | | | Tested with h5committest.
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