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* [svn-r23435] ported revisions 23346:23432 from the trunkRaymond Lu2013-03-2245-945/+831
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| * [svn-r23431] Fix for HDFFV-8141.Larry Knox2013-03-223-34/+65
| | | | | | | | | | | | | | | | Changes default value for USE_SHARED_LIB in compile scripts to yes when static is disabled. Comments in scripts about the order of flag variables containing library paths was also corrected. Tested with h5committest on duck, jam, koala, and ostrich in addition to specific testing for the compile script change.
| * [svn-r23428] Description:Binh-Minh Ribler2013-03-221-3/+3
| | | | | | | | | | | | Fixed bug HDFFV-4272. Just typos in documentation. Platform tested: Jam
| * [svn-r23427] Purpose: Fix bug HDFFV-8067Binh-Minh Ribler2013-03-2211-27/+31
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: + The C++ test failed with the new PGI compilers versions 12.4 and 12.5 + An exception thrown by an internal function, which was called by a constructor, was not propagating to the test program during the stack unwinding, so it couldn't be caught by the test and the program terminated. + Various trials and errors indicated that the problem is where an STD string converted to a char* being passed to the internal function, but confirmation has not been found yet. It could be a compiler bug. Solution: + Added a try/catch in the constructor around the internal function and re-throw the exception when it is caught. This is a workaround. + Unrelated minor fixes: removed unused variables and MESSAGE's; commented out tvlstr.cpp/test_read_vl_string_attribute because it may be redundant, and commented out H5Tpkg.h inclusion because TEST_ALIGNMENT is not added yet and probably not necessary in the C++ API. Platforms tested: Linux/32 2.6 (jam) with PGI compilers Linux/32 2.6 (jam) with GNU compilers Linux/64 2.6 (koala)
| * [svn-r23417] Fixes an issue (HDFFV-8159) where uninitialized memory was ↵Dana Robinson2013-03-211-8/+11
| | | | | | | | | | | | | | | | | | | | | | | | | | being read during variable-length type conversion. All variable-length type conversion buffers are now initialized to contain 0s on allocation. Tested on: jam(w/ fortran, C++, parallel, parallel fortran) ostrich This is a very small change (basially changing malloc to calloc) and is unlikely to cause issues on other platforms.
| * [svn-r23415] Description:Quincey Koziol2013-03-211-2/+2
| | | | | | | | | | | | | | Avoid using fpclassify() for detecting zero/non-zero values. Tested on: Mac OSX/64 10.8.3 (amazon) w/debug
| * [svn-r23412] Add test depends on clear test. Occasional failures.Allen Byrne2013-03-211-0/+7
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| * [svn-r23411] HDDFV-8322: Free allocations in command line parsing.Allen Byrne2013-03-211-36/+18
| | | | | | | | Tested: local linux
| * [svn-r23410] HDFFV-8264: Using F2003, build fails on Fedora with undefined ↵Scot Breitenfeld2013-03-211-3/+4
| | | | | | | | | | | | | | | | | | | | | | reference to __h5r_MOD_h5rget_region_region_f This turned out being an issue with configure. The reporter submitted a patch which fixed the fact that we should not be setting AM_FCFLAGS (an automake variable) with FFLAGS (a user variable). I removed this, and we now only set FFLAGS if the environment variable is set, otherwise we don't. Tested: jam (gnu)
| * [svn-r23407] Purpose: Jonathan Kim2013-03-204-10/+26
| | | | | | | | | | | | | | | | | | | | | | | | | | HDFFV-8214 - h5repack failed converting small chunked dataset (size < 1K) to contiguous layout. Description: h5repack failed converting small chunked dataset (size < 1K) to contiguous layout. The first case was when chunk dim is bigger than the dataset dim (at leat one), h5repack failed with displaying error stacks. The other case is when chunk dim is smaller than the dataset dim, h5repack failed to change layout. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), emu (solaris-BE),fred (mac64-LE), Windows (32-LE cmake), cmake (jam)
| * [svn-r23395] Description:Quincey Koziol2013-03-207-611/+619
| | | | | | | | | | | | | | | | | | | | | | | | Bring Coverity changes from branch to trunk: r20682: fixed coverity: 76, 77, 635, 636, 1164, 1165, 1166, 1121, 1122, 1117, 1343 Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
| * [svn-r23388] HDDFV-8322: Free allocations in parse_command_line function.Allen Byrne2013-03-191-2/+11
| | | | | | | | Tested: local linux
| * [svn-r23379] HDFFV-8297 h5fc does not recognize files ending in .f95, .f03, ↵Scot Breitenfeld2013-03-191-2/+7
| | | | | | | | | | | | | | | | and .f08 as source files added missing extensions. Tested: jam (gnu)
| * [svn-r23366] Removed the H5Pset_dxpl_multi and H5Pget_dxpl_multi functions ↵Dana Robinson2013-03-183-184/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | from the library. The intended functionality for them was never fully implemented and they are fundamentally broken. The functions were removed from the C and C++ interfaces. They were not exported in the Fortran interface. Tested on: jam(c++/fortran/hl) I tested using check-vfd to ensure the multi VFD still works properly. There is no reason to test this on other machines or on parallel.
| * [svn-r23361] Snapshot version 1.9 release 148HDF Tester2013-03-1713-26/+26
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| * [svn-r23354] Close prop list varAllen Byrne2013-03-151-4/+8
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| * [svn-r23353] Correct target nameAllen Byrne2013-03-151-3/+3
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* | [svn-r23432] I added a new macro HDF5_PLUGIN_PRELOAD to skip plugin loading ↵Raymond Lu2013-03-228-46/+94
| | | | | | | | | | | | during data reading. Tested on koala and jam.
* | [svn-r23406] Correct typoAllen Byrne2013-03-201-1/+1
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* | [svn-r23405] Correct typoAllen Byrne2013-03-201-1/+1
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* | [svn-r23403] Refactor windows code:Allen Byrne2013-03-206-67/+29
| | | | | | | | | | | | windows uses ';' as path separator windows default path is different windows find files needs '*.*'
* | [svn-r23402] Plugin Library needs own dll decoratorAllen Byrne2013-03-201-2/+11
| | | | | | | | Tested: windows
* | [svn-r23401] I cleaned up the test.Raymond Lu2013-03-201-149/+8
| | | | | | | | Tested on koala.
* | [svn-r23400] I updated Makefile.in for Mac.Raymond Lu2013-03-201-1/+1
| | | | | | | | Tested on MacGoblin and koala.
* | [svn-r23399] Add missing CMakeLists.txt fileAllen Byrne2013-03-201-0/+1
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* | [svn-r23390] Remove dll decoration from local functionAllen Byrne2013-03-191-3/+3
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* | [svn-r23389] HDFFV-8338: remove unused headersAllen Byrne2013-03-191-2/+0
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* | [svn-r23387] Add dynamic windows decorationsAllen Byrne2013-03-191-4/+17
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* | [svn-r23386] More updates for Windows.Raymond Lu2013-03-191-49/+9
| | | | | | | | Tested on koala.
* | [svn-r23384] Copy dynamic lib to a plugins folder for testing. This will ↵Allen Byrne2013-03-193-2/+25
| | | | | | | | | | | | avoid the segfault with looking for the library with other libraries. Tested: local linux
* | [svn-r23382] I took out H5PLpkg.h. It no longer exist.Raymond Lu2013-03-191-1/+0
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* | [svn-r23381] More update for Windows.Raymond Lu2013-03-191-3/+72
| | | | | | | | Tested on koala
* | [svn-r23380] Description:Quincey Koziol2013-03-1912-486/+428
| | | | | | | | Review & cleanup code.
* | [svn-r23377] Description:Quincey Koziol2013-03-192-0/+15
| | | | | | | | | | Re-run bon/reconfigure, to generate detection of dirent.h and set up macro.
* | [svn-r23376] Description:Quincey Koziol2013-03-191-0/+1
| | | | | | | | Add dirent.h detection to configure.ac
* | [svn-r23373] Some updates for Windows.Raymond Lu2013-03-182-4/+4
| | | | | | | | Not tested.
* | [svn-r23372] Description:Quincey Koziol2013-03-182-85/+55
|\ \ | |/ | | | | | | | | | | Bring in missing r23248 from trunk. Tested on: Not tested...
| * [svn-r23341] Snapshot version 1.9 release 147HDF Tester2013-03-1013-26/+26
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| * [svn-r23338] Updated with HDFFV-8305 fix.Albert Cheng2013-03-071-1/+10
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| * [svn-r23336] Discovered some typo in the last added comment. Rewrote the ↵Albert Cheng2013-03-071-3/+3
| | | | | | | | | | | | comment. Tested: no need since only comments are changed.
| * [svn-r23333] Update CMake documentation, remove obsolete info for windows.Allen Byrne2013-03-064-670/+483
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| * [svn-r23332] HDFFV-8322: for valgrind testing, split-up testhdf5 tests by ↵Allen Byrne2013-03-062-3/+3
| | | | | | | | | | | | excluding and running long running tests separately. Tested: local linux
| * [svn-r23329] Bug fix: HDFFV-8305Albert Cheng2013-03-061-1/+4
| | | | | | | | | | | | | | | | Some systems, like Mac, strings inspect library files and older versions of strings maybe know newer library format, resulting in errors. Make it read the file as stdin, avoiding this problem. Tested: h5committest. all passed.
| * [svn-r23327] Added the reference of the requirement of POSIX Compliance.Albert Cheng2013-03-051-6/+22
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| * [svn-r23326] Refactor testhdf5 for memcheck testing. Test longest running ↵Allen Byrne2013-03-051-3/+16
| | | | | | | | options using only.
| * [svn-r23325] DescriptionScot Breitenfeld2013-03-057-448/+616
| | | | | | | | | | | | | | | | | | | | | | ------------ Fix for: HDFFV-8149: h5pset_external_f API - the offset is declared integer which can cause problem if use 64-bit integer Added new type off_t, modified source files and added a new test. Tested (jam, intel, gnu)
| * [svn-r23323] Snapshot version 1.9 release 146HDF Tester2013-03-0313-26/+26
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| * [svn-r23322] HDFFV-8322: Close resources, found from valgrind testingAllen Byrne2013-03-015-7/+30
| | | | | | | | Tested: local linux
| * [svn-r23320] Close resources, found from valgrind testingAllen Byrne2013-02-271-0/+6
| | | | | | | | Tested: local linux
| * [svn-r23317] Fix indentationAllen Byrne2013-02-251-3/+3
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