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| * | [svn-r23386] More updates for Windows.Raymond Lu2013-03-191-49/+9
| | | | | | | | | | | | Tested on koala.
| * | [svn-r23384] Copy dynamic lib to a plugins folder for testing. This will ↵Allen Byrne2013-03-193-2/+25
| | | | | | | | | | | | | | | | | | avoid the segfault with looking for the library with other libraries. Tested: local linux
| * | [svn-r23382] I took out H5PLpkg.h. It no longer exist.Raymond Lu2013-03-191-1/+0
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| * | [svn-r23381] More update for Windows.Raymond Lu2013-03-191-3/+72
| | | | | | | | | | | | Tested on koala
| * | [svn-r23380] Description:Quincey Koziol2013-03-1912-486/+428
| | | | | | | | | | | | Review & cleanup code.
| * | [svn-r23377] Description:Quincey Koziol2013-03-192-0/+15
| | | | | | | | | | | | | | | Re-run bon/reconfigure, to generate detection of dirent.h and set up macro.
| * | [svn-r23376] Description:Quincey Koziol2013-03-191-0/+1
| | | | | | | | | | | | Add dirent.h detection to configure.ac
| * | [svn-r23373] Some updates for Windows.Raymond Lu2013-03-182-4/+4
| | | | | | | | | | | | Not tested.
| * | [svn-r23372] Description:Quincey Koziol2013-03-182-85/+55
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | Bring in missing r23248 from trunk. Tested on: Not tested...
| * | | [svn-r23370] Corrected macro name and removed optional function info in ↵Allen Byrne2013-03-182-2/+2
| | | | | | | | | | | | | | | | ERROR macro
| * | | [svn-r23369] Escape "\" charAllen Byrne2013-03-181-1/+1
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| * | | [svn-r23368] Correct names and add includes for windowsAllen Byrne2013-03-183-4/+16
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| * | | [svn-r23367] I took out a declaration of "DIR" for Windows support. Raymond Lu2013-03-181-4/+5
| | | | | | | | | | | | | | | | Not tested.
| * | | [svn-r23365] I opted out dirent.h for Windows.Raymond Lu2013-03-181-2/+3
| | | | | | | | | | | | | | | | Not tested yet.
| * | | [svn-r23360] I added Windows support to H5PL_find function.Raymond Lu2013-03-161-1/+63
| | | | | | | | | | | | | | | | Tested on koala but not on Windows yet.
| * | | [svn-r23359] I added some macros and refactoring the code to prepare for ↵Raymond Lu2013-03-1510-102/+203
| | | | | | | | | | | | | | | | | | | | | | | | Windows support. Tested on koala.
| * | | [svn-r23358] correct env var value for testAllen Byrne2013-03-151-1/+1
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| * | | [svn-r23357] HDFFV-8338: Add cmake support, this commit only tested for linuxAllen Byrne2013-03-153-0/+105
| | | | | | | | | | | | | | | | Tested: local linux
| * | | [svn-r23356] Correct target nameAllen Byrne2013-03-151-1/+1
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| * | | [svn-r23350] I cleaned up some code and added comments for my previous ↵Raymond Lu2013-03-149-59/+142
| | | | | | | | | | | | | | | | | | | | | | | | checkin of the DESY project. Tested on koala.
| * | | [svn-r23347] ported revision 23248:23346 from the trunkRaymond Lu2013-03-13161-3224/+4016
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| * | | [svn-r23346] First commit for DESY project. It has the basic functionality ↵Raymond Lu2013-03-1331-44/+1834
| | | | | | | | | | | | | | | | | | | | | | | | of loading dynamically filter libraries and a simple test for it. Tested on koala.
* | | | [svn-r23476] HDFFV-8359: correct script function calls.Allen Byrne2013-03-281-5/+5
| | | | | | | | | | | | | | | | Tested: local linux
* | | | [svn-r23475] added dll for verify_Fortran_INTEGER_4Scot Breitenfeld2013-03-281-6/+3
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* | | | [svn-r23470] update INSTALL_parallel with build instructions for Hopper.Mohamad Chaarawi2013-03-271-0/+67
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* | | | [svn-r23469] Description:Quincey Koziol2013-03-271-1/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Change h5diff_exit() routine to always return a zero exit code when running in parallel, since returning a non-zero exit code can cause MPI implementations to print output and that can throw off our "expected output" comparisons. Note that this change only changes the exit code for situations where an incorrect command-line parameter was given - ph5diff was already returning a zero exit code for all "normal" executions, including those where a serial h5diff would return a non-zero exit code. Tested on: Mac OSX/64 10.8.3 (amazon) w/parallel (Too minor to require h5committest)
* | | | [svn-r23466] more missed static declarationsMohamad Chaarawi2013-03-272-6/+6
| | | | | | | | | | | | | | | | tested on Jam, to minor for committest
* | | | [svn-r23463] Added dllexport for verify_real_kind_7Scot Breitenfeld2013-03-271-1/+1
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* | | | [svn-r23462] Added definition for h5kind_to_typeScot Breitenfeld2013-03-271-0/+1
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* | | | [svn-r23461] add missing static declarations of rotuines.Mohamad Chaarawi2013-03-272-2/+2
| | | | | | | | | | | | | | | | tested on Jam - too minor for committest
* | | | [svn-r23460] Add missing infile assignment and error countsAllen Byrne2013-03-261-3/+19
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* | | | [svn-r23456] Description:Binh-Minh Ribler2013-03-261-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | A "return" was missing from a non-void function. Fixed. Platforms Tested: Linux/32 2.6 (jam) Linux/ppc64 (ostrich) Asked Allen check Windows.
* | | | [svn-r23449] Update script for reporting errors from configure, build, test.Allen Byrne2013-03-251-3/+16
| | | | | | | | | | | | | | | | Tested: jam
* | | | [svn-r23446] HDFFV-8344, HDFFV-8346: merge from 1.8 branchAllen Byrne2013-03-255-7/+21
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* | | | [svn-r23441] HDFFV-8245: bug fix. Snow Leopard (darwin 10.X) does not have ↵Albert Cheng2013-03-251-3/+12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | clang++. Reversed it to use gcc/g++ as the default C and CXX compilers for Darwin 10.X systems. Tested: duck (darwin 11), wren (darwin 12) and fred (darwin 10).
* | | | [svn-r23438] Purpose: Fix bug HDFFV-7520Binh-Minh Ribler2013-03-233-7/+112
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Added wrappers for H5Aexists. Platforms Tested: Linux/32 2.6 (jam) Linux/64 2.6 (koala) Linux/ppc64 (ostrich)
* | | | [svn-r23434] Improvement: DFFV-8245Albert Cheng2013-03-221-4/+35
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Use Clang as the compiler for the Mac platform. Changed all Mac to use clang/clang++ as the default C and CXX compilers if not provided by the user. Still use gfortran as the default fortran compiler since Apple does not provide any fortran compiler. Tested: passed all three macs OS, snow leapord (fred), lion (duck) and mountain lion (wren). Also passed test using Apple gcc, Gnu gcc, Intel as the C compilers and all corresponding CXX compilers fits in. Did not run h5committest or other non-mac platform since this change affect Apple platforms only.
* | | | [svn-r23433] Fix for HDFFV-7996.Larry Knox2013-03-223-0/+42
| |_|/ |/| | | | | | | | | | | | | | | | | Compile scripts will add paths for external libraries linked to executable files that they create. Eliminates need for LD_LIBRARY_PATH for szip in locations not known to ld. Teted on platypus and emu (64bit) in addition to h5committest.
* | | [svn-r23431] Fix for HDFFV-8141.Larry Knox2013-03-223-34/+65
| | | | | | | | | | | | | | | | | | | | | | | | Changes default value for USE_SHARED_LIB in compile scripts to yes when static is disabled. Comments in scripts about the order of flag variables containing library paths was also corrected. Tested with h5committest on duck, jam, koala, and ostrich in addition to specific testing for the compile script change.
* | | [svn-r23428] Description:Binh-Minh Ribler2013-03-221-3/+3
| | | | | | | | | | | | | | | | | | Fixed bug HDFFV-4272. Just typos in documentation. Platform tested: Jam
* | | [svn-r23427] Purpose: Fix bug HDFFV-8067Binh-Minh Ribler2013-03-2211-27/+31
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: + The C++ test failed with the new PGI compilers versions 12.4 and 12.5 + An exception thrown by an internal function, which was called by a constructor, was not propagating to the test program during the stack unwinding, so it couldn't be caught by the test and the program terminated. + Various trials and errors indicated that the problem is where an STD string converted to a char* being passed to the internal function, but confirmation has not been found yet. It could be a compiler bug. Solution: + Added a try/catch in the constructor around the internal function and re-throw the exception when it is caught. This is a workaround. + Unrelated minor fixes: removed unused variables and MESSAGE's; commented out tvlstr.cpp/test_read_vl_string_attribute because it may be redundant, and commented out H5Tpkg.h inclusion because TEST_ALIGNMENT is not added yet and probably not necessary in the C++ API. Platforms tested: Linux/32 2.6 (jam) with PGI compilers Linux/32 2.6 (jam) with GNU compilers Linux/64 2.6 (koala)
* | | [svn-r23417] Fixes an issue (HDFFV-8159) where uninitialized memory was ↵Dana Robinson2013-03-211-8/+11
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | being read during variable-length type conversion. All variable-length type conversion buffers are now initialized to contain 0s on allocation. Tested on: jam(w/ fortran, C++, parallel, parallel fortran) ostrich This is a very small change (basially changing malloc to calloc) and is unlikely to cause issues on other platforms.
* | | [svn-r23415] Description:Quincey Koziol2013-03-211-2/+2
| | | | | | | | | | | | | | | | | | | | | Avoid using fpclassify() for detecting zero/non-zero values. Tested on: Mac OSX/64 10.8.3 (amazon) w/debug
* | | [svn-r23412] Add test depends on clear test. Occasional failures.Allen Byrne2013-03-211-0/+7
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* | | [svn-r23411] HDDFV-8322: Free allocations in command line parsing.Allen Byrne2013-03-211-36/+18
| | | | | | | | | | | | Tested: local linux
* | | [svn-r23410] HDFFV-8264: Using F2003, build fails on Fedora with undefined ↵Scot Breitenfeld2013-03-211-3/+4
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | reference to __h5r_MOD_h5rget_region_region_f This turned out being an issue with configure. The reporter submitted a patch which fixed the fact that we should not be setting AM_FCFLAGS (an automake variable) with FFLAGS (a user variable). I removed this, and we now only set FFLAGS if the environment variable is set, otherwise we don't. Tested: jam (gnu)
* | | [svn-r23407] Purpose: Jonathan Kim2013-03-204-10/+26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | HDFFV-8214 - h5repack failed converting small chunked dataset (size < 1K) to contiguous layout. Description: h5repack failed converting small chunked dataset (size < 1K) to contiguous layout. The first case was when chunk dim is bigger than the dataset dim (at leat one), h5repack failed with displaying error stacks. The other case is when chunk dim is smaller than the dataset dim, h5repack failed to change layout. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), emu (solaris-BE),fred (mac64-LE), Windows (32-LE cmake), cmake (jam)
* | | [svn-r23395] Description:Quincey Koziol2013-03-207-611/+619
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring Coverity changes from branch to trunk: r20682: fixed coverity: 76, 77, 635, 636, 1164, 1165, 1166, 1121, 1122, 1117, 1343 Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN (too minor to require h5committest)
* | | [svn-r23388] HDDFV-8322: Free allocations in parse_command_line function.Allen Byrne2013-03-191-2/+11
| | | | | | | | | | | | Tested: local linux
* | | [svn-r23379] HDFFV-8297 h5fc does not recognize files ending in .f95, .f03, ↵Scot Breitenfeld2013-03-191-2/+7
| | | | | | | | | | | | | | | | | | | | | | | | and .f08 as source files added missing extensions. Tested: jam (gnu)