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* Add doxygen for high level modules. (#1839)vchoi-hdfgroup2022-07-0114-10/+4480
| | | | | | | | | | | | * Add doxygen for high level modules. * Committing clang-format changes * Correct spelling based on spelling check. * Committing clang-format changes Co-authored-by: vchoi <vchoi@jelly.ad.hdfgroup.org> Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Removes workaround for platforms that lack C99 stuct initializers (#1842)Dana Robinson2022-07-015-185/+0
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* Adds a -Werror debug Autotools test and updates build modes (#1833)Dana Robinson2022-06-303-4/+64
| | | | | | | | | | * Adds a -Werror debug Autotools test and updates build modes * Un-excludes the workflow files * Strip out -Werror from CFLAGS when running configure tests This causes spurious test failures when the configuration test programs raise warnings.
* Minor configure comment tweaks from autoupdate (#1838)Dana Robinson2022-06-301-2/+2
| | | | The autoupdate script identified some cruft that was unchanged in the comments
* Fix for gcc-12 warning about string truncation in H5Opline.c (#1835)Dana Robinson2022-06-301-6/+10
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* Updates the MinGW configure.ac check for the Winsock library (#1837)Dana Robinson2022-06-301-1/+2
| | | | | | | Ubuntu 22.04 complains about AC_HAVE_LIBRARY being deprecated. This updates the macro to AC_CHECK_LIB, where the specified function is GetUserName(). This change only affects MinGW
* Set Autotools build mode correctly in GitHub workflows (#1834)Dana Robinson2022-06-302-30/+54
| | | | | * Sets build mode correctly w/ Autotools * Updates GitHub gcc and installs OpenMPI
* Fixes a few minor parallel warnings (#1832)Dana Robinson2022-06-294-14/+37
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* remove superfluous initialization, fixes issue with Cray compiler (Crusher) ↵Scot Breitenfeld2022-06-291-1/+0
| | | | (#1828)
* Quiets const warnings (#1831)Dana Robinson2022-06-2915-40/+52
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* Documents Windows badness in H5Pget_external() (#1821)Dana Robinson2022-06-242-1/+13
| | | | | * Documents Windows badness in H5Pget_external() * Added a cast for off_t
* Converts testhdf5 macros to h5test macros in chunk_info.c (#1820)Dana Robinson2022-06-231-30/+66
| | | | The two macro schemes were not designed to work together. Also quiets some MSVC warnings about comparing pointers and integers.
* Set a constant in H5SM to UINT_MAX instead of -1U (#1822)Dana Robinson2022-06-231-1/+1
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* Work-around for MSVC issue with flex-generated code (#1823)Dana Robinson2022-06-234-479/+595
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* Quiets size warning in large library setting string (#1818)Dana Robinson2022-06-221-28/+39
| | | | | | | | | | * Quiets size warning in large library setting string If the size of this string is a problem, people can build with the embedded library info disabled. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* sprintf to snprintf (#1815)Sean McBride2022-06-2243-331/+376
| | | | | | | | | | | * Straightforward conversion of sprintf to the safer snprintf * Trickier conversion of sprintf to safer snprintf This involved minor changes to private function signatures to take the size of the buffer. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Adds notes about off_t sizes on Windows (#1817)Dana Robinson2022-06-221-1/+9
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* Converts __int64 to LONGLONG in LARGE_INTEGER union members on Windows (#1816)Dana Robinson2022-06-224-4/+4
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* Various warning fixes (#1812)Sean McBride2022-06-2237-304/+143
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Fixed -Wreserved-id-macro warnings from header include guards * Removed all __int64 and LL suffix stuff now that C99 is minimum requirement * Rename `H5FD_CTL__` to `H5FD_CTL_` to fix -Wreserved-id-macro warnings Double underscore is reserved in C++ and this public header should be C++ compatible. * Never define __STDC_FORMAT_MACROS anymore Defining it causes a -Wreserved-id-macro. Happily, according to the C++11 standard: "The macros defined by <stdint> are provided unconditionally. In particular, the symbols __STDC_LIMIT_MACROS and __STDC_CONSTANT_MACROS (mentioned in C99 footnotes 219, 220, and 222) play no role in C++." https://cplusplus.github.io/LWG/issue984 So looks like it's not necessary to define it with reasonably new toolchains. * Fixed some -Wunused-macros warnings, removed dead code * Fixed all -Wdouble-promotion warnings in C++ files * Fixed remaining -Wsuggest-destructor-override warnings * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fix bugs in parallel selection I/O (#1803)Neil Fortner2022-06-091-40/+44
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* Develop sync (#1793)Allen Byrne2022-06-0912-21/+37
| | | | | * Synch update * Branch sync changes
* Updates the release schedule (#1796)Dana Robinson2022-06-063-8/+7
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* Update windows VS2019 and fix comments (#1781)Allen Byrne2022-05-203-4/+4
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* Remove extra ')'. (#1779)Larry Knox2022-05-191-3/+3
| | | Add configure help text for TestExpress.
* Set default level to minimum time (#1722)Allen Byrne2022-05-1711-29/+79
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* Replace obsolete docver arg with arg to supply branch name (#1771)Allen Byrne2022-05-131-31/+11
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* Allows parallel + thread-safe combination in Autotools and CMake (#1760)Dana Robinson2022-05-132-17/+0
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* Use windows ENV var for default install dir setting (#1763)Allen Byrne2022-05-122-2/+2
| | | | | * Use windows ENV var for default install dir setting * Change variable name
* Revert "Cleanup and shellcheck fixes in the SWMR test script (#1741)" (#1758)Dana Robinson2022-05-101-53/+56
| | | This reverts commit cea0dc4565312f519c26de17b987b75652ab95df.
* Add a workaround for buggy PGI C Compiler version 19.10, which quits (#1705)David Young2022-05-081-4/+15
| | | | with the unhelpful and misleading error message `PGC-S-0053-Illegal use of void type` when I put a `static` qualifier on my tables.
* Use git command to get branch name (#1748)Allen Byrne2022-05-071-1/+1
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* Cleanup and shellcheck fixes in the SWMR test script (#1741)Dana Robinson2022-05-071-56/+53
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* Re-promote some GNU warnings to errors (#1508)David Young2022-05-068-60/+20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Promote some GCC warnings back to errors and deal with build breakage. I tested configuring and building with GCC 8.3.0 with `.../configure --prefix=$HOME/wrk/install/manydsets --enable-build-mode=production --enable-symbols=-gdwarf-4 --enable-warnings-as-errors --enable-java --enable-hl --enable-fortran --enable-cxx --enable-mirror-vfd --enable-ros3-vfd --enable-direct-vfd` and with the same options but `--enable-build-mode=debug`. * Promote -Wrestrict to -Werror=restrict to help catch overlapping arguments to strcpy, memcpy, et cetera, at compile time. * NFCI: sort lines. * Committing clang-format changes * NFCI: remove whitespace at EOL. * Re-use temporary variable `shared`. * Remove merge oopsie. * Mention that no op codes are understood per review comment. * Change this back to the develop branch's way, since this change isn't integral to the PR. * Committing clang-format changes * NFCI: reduce differences with `develop` branch in the hope that that also kicks off CI. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* Change order of naming commands (#1742)Allen Byrne2022-05-061-1/+2
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* Minor things noticed while merging to 1.10 (#1739)Dana Robinson2022-05-066-90/+82
| | | | | * Minor things noticed while merging to 1.10 * Set HDF5_DRIVER back in string
* Fixes for S3 and HDFS VFDs with tools (#1740)jhendersonHDF2022-05-065-59/+38
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* Fix a few Clang sanitizer warnings (#1727)jhendersonHDF2022-05-053-18/+32
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* changes parallel tests to .F90 ext. and fixes the CALL check strings (#1725)Scot Breitenfeld2022-05-045-19/+18
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* h5test.h testing macros get enclosed in do..while loops (#1721)Dana Robinson2022-05-0483-25356/+25428
| | | | | | | * h5test.h testing macros get enclosed in do..while loops * Adds missed macro in hl C++ code * Fixes macro in Windows code
* Fixes a bug where t_cache fails due to a string size being too small (#1720)Dana Robinson2022-05-041-4/+6
| | | | | | | | | * Fixes a bug where t_cache fails due to a string size being too small Recent warning reductions led to an incorrect string size being passed to h5_fileaccess, causing the test to silently fail. In addition to fixing the bug, the test will now fail noisily on setup failures. * Updates the t_cache test to fail noisily on setup errors
* Fixes unused/unset variable warnings from aocc (#1712)Dana Robinson2022-05-034-35/+5
| | | | | | | * Fixes unused/unset variable warnings from aocc * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Updates warnhist script to deal with AMD Optimizing Compiler messages (#1713)Dana Robinson2022-05-031-0/+3
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* test/dt_arith: use `isnan` instead of self comparison (#1709)Ben Boeckel2022-05-031-5/+5
| | | | | It is more obvious what is being asked this way. Also include a `clang-format` fix.
* Fix some const cast and stack/static object size warnings (#1700)jhendersonHDF2022-05-0121-110/+282
| | | | | | | | | * Fix various warnings * Move HDfree_const to H5private.h for wider use * Print output from all ranks in parallel tests on allocation failure * Move const pointer freeing macro to h5test.h for now
* Fix object size warnings in cache.c test (#1701)jhendersonHDF2022-05-011-4051/+2717
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* Fix SWMR/refresh bug hidden by library free lists (#1702)jhendersonHDF2022-04-301-4/+10
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* Be a bit safer with signed arithmetic, thus quieting some signed-overflow ↵David Young2022-04-303-22/+25
| | | | | | | | | | | | | | | | | | | | | | | warnings from GCC (#1706) * Avoid a signed overflow: check the range of `entry_ptr->age` before increasing it instead of increasing it and then checking the range. This quiets a GCC warning. * Avoid the potential for signed overflow by rewriting expressions `MAX(0, fwidth - n)` as `MAX(n, fwidth) - n` for various `n`. This change quiets some GCC warnings. * Change some local variables that cannot take sensible negative values from signed to unsigned. This quiets GCC warnings about potential signed overflow. * In a handful of instances, check the range of a signed integer before increasing/decreasing it, just in case the increase/decrease overflows. This quiets a handful of GCC signed-overflow warnings. * Committing clang-format changes Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Fixes stack size warnings in set_extent test (#1698)Dana Robinson2022-04-281-77/+127
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* Fixes stack size warnings in dtransform (#1696)Dana Robinson2022-04-271-10/+26
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* Fixes stack size warnings in ntypes (#1695)Dana Robinson2022-04-261-15/+60
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