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* [svn-r12344] Purpose:Albert Cheng2006-05-121-1/+4
| | | | | | | | | | | | | | | | | | | | Bug fix. Description: C++ testhdf5 failed when it tried to inspect the size of a file via the HDstat call. The reason was that the CFLAGS has -D_LARGE_FILES hardset in it while the CXXFLAGS does not. So, C is using an off_t that is 8 bytes while C++ is using off_t as 4 bytes. C is using a version of 64bits stat/off_t/etc while C++ uses the 32 bits version. Thus a failure. Solution: Added -D_LARGE_FILES to $CXXFLAGES so that both C and C++ are using the same version of stat/off_t/etc. Platforms tested: Tested in Copper only, both 32 and 64 bits since the changes affected the AIX platform only.
* [svn-r12343] Purpose:MuQun Yang2006-05-111-16/+48
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix for collective chunk IO Description: Several options have been provided inside HDF5 library for obtaining chunk addresses when doing collective chunk IO. One option is to obtain chunk addresses for one process and broadcast to other processes. This option needs all processes to participate. If using link-chunked IO without any optimizations, sometimes this is not true due to the random initialization for one variable at mpich 1.2.7. This is a bug inside the collective chunk IO code. Solution: 1.Initalize all the variables to some safe numbers, 2. Avoid using MPI broadcast to obtain the chunk address if possible until more performance studies have been done. 3. Seems okay to obtain chunk addresses individually for each processor. This option may cover most cases. Platforms tested: h5committest(copper is not usable) NCSA teragrid (mpich 1.2.5) mir 64-bit linux (mpich 1.2.6) Misc. update:
* [svn-r12342] Purpose:Albert Cheng2006-05-104-29/+503
| | | | | | | | | | | | | | | | | | | | | | | | | | | bug fix. Description: Previous H5private.h would attempt to use the off64_t/stat64/etc by checking just sizeof __INT64 being 8. This caused errors in some machines like alpha cluster which is a 64bit machine. Its compiler supports the type __int64 but it does not support off64_t since its off_t is already 64bits big. The above code casued the compiler to complain about the unknown off64_t and such. Solution: H5private.h: Changed the code to use the pseudo standard of off64_t/stat64/etc only if sizeof(off_t) is not 64 bits AND sizeof(off64_t) exists and is 64 bits. This assumes if off64_t is defined, all those stat64, fstat64, etc are supported too. configure.in: configure: Added the testing of sizeof(off64_t) to support the above solution. Platforms tested: h5committested. Also tested at LANL QSC.
* [svn-r12341] Elena Pourmal2006-05-081-0/+1
| | | | | | | | | | | | | | | | | Purpose: Maintenance Description: dtypes.c compilation failed with gcc 4.1 due to the missing prototype of the opaque_funcs function. Failure was reported by a user who tried to build hdf5-1.8.0-alpha2. I reproduced the failure on sleipnir with gcc41 compiler. Solution: Added prototype definition. Platforms tested: sleipnir with gcc41, heping and copper Misc. update:
* [svn-r12339] Purpose: Maintenance after hdf5-1.8.0-alpha2 releaseElena Pourmal2006-05-065-17/+17
| | | | | | | | | | Description: Changed version suffix to alpha3 Solution: ran bin/h5vers script Platforms tested: Misc. update:
* [svn-r12337] Purpose: Maintenancehdf5-1_8_0-alpha2Elena Pourmal2006-05-062-2/+2
| | | | | | | | | | | | Description: Comitting files modified by the bin/release script before tagging the release. Solution: Platforms tested: released tar ball was tested on heping, and copper 64-bit sequential and 32-bit parallel Misc. update:
* [svn-r12336] Purpose: MaintenanceElena Pourmal2006-05-051-8/+3
| | | | | | | | | | Description: Brought file up-to-alpha2 release. Solution: Platforms tested: Misc. update:
* [svn-r12335] Purpose: MaintenanceElena Pourmal2006-05-051-5/+8
| | | | | | | | | | | | Description: Added information about compilation problems on Altix SGI with Intel v9.0 compilers for testmeta.c test Marked platforms on which alpha2 was not tested. Solution: Platforms tested: Misc. update:
* [svn-r12334] Purpose:MuQun Yang2006-05-051-8/+23
| | | | | | | | | | | | | | | | Updating the windows DLL project file Description: new file H5HFiter.c has been added project file needs to be reflected Solution: Platforms tested: VSMS 6.0 Misc. update:
* [svn-r12333] Purpose:MuQun Yang2006-05-051-2/+17
| | | | | | | | | | | | | | | | Updating windows project file Description: new file H5HFiter.c has been added project file needs to be reflected Solution: Updating the project file Platforms tested: VS 6.0 Misc. update:
* [svn-r12332] Purpose: Maintenance for 1.8.0-alpha2 releaseElena Pourmal2006-05-051-2/+15
| | | | | | | | | | Description: Added pointers to 1.8.0 docs. Solution: Platforms tested: Misc. update:
* [svn-r12331] Purpose: MaintenanceElena Pourmal2006-05-051-8/+7
| | | | | | | | | | Description: Updated "Known problems" section for alpha2 release Solution: Platforms tested: Misc. update:
* [svn-r12330] Purpose:MuQun Yang2006-05-041-0/+8
| | | | | | | | | | | | Update the information about mpi-io bug in the release.txt. Description: Solution: Platforms tested: Misc. update:
* [svn-r12329] Purpose:MuQun Yang2006-05-041-1/+4
| | | | | | | | | | | | | | | | | work-around solution for special cases in collective IO Description: For collective IO if some processes don't have any contributions to IO, even with the new SGI compiler(7.4.4m), the testing program will be hanged. Previously only thought it didn't work with old compiler. It turned out not to be true. Solution: Turned off the special flag: H5_MPI_SPECIAL_COLLECTIVE_IO_WORKS Platforms tested: UCAR IRIX 6.5 this file only affects IRIX 6.x system. No need to test at other platforms. Misc. update:
* [svn-r12328] Elena Pourmal2006-05-041-1/+2
| | | | | | | | | | | | Purpose: Maintenance Description: fheap test failed on VMS due to the missing H5HFiter module Solution: Updated make.com file to include the missing module. Platforms tested: VMS server with IEEE option. Misc. update:
* [svn-r12327] Purpose:James Laird2006-05-031-0/+4
| | | | | | | | | | | | | | Bug fix Description: A datatype wasn't being closed in th5s.c Solution: This minor oversight caused an error with my Object Header code. The datatype is now closed in the test. Platforms tested: windows, mir, copper
* [svn-r12326] Elena Pourmal2006-05-031-1/+1
| | | | | | | | | | | | | | | | Purpose: Bug fix for VMS Description: I am not sure why I didn't see this bug before ;-O. H5_HAVE_FILE_VERSIONS macro was added (by me) to the wrong place causing test program to get creation property list from a non-existing file object. As a result test program failed with access violation error. Solution: Fixed. Platforms tested: VMS server and copper (just in case) Misc. update:
* [svn-r12325] James Laird2006-05-032-7/+8
| | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: The Daily Test errors were due to H5_CFLAGS not being included when configure tested the sizes of some values. Rolled back the offending changes. Solution: There is a "correct" solution to this problem, which is to ensure that the H5_CFLAGS are included in autoconf's tests. This rollback is only temporary until the "real" fix can be applied. Platforms tested: copper (problem only in aix config file)
* [svn-r12324] Purpose: Fighting with VMS make filesElena Pourmal2006-05-031-4/+7
| | | | | | | | | | | | | | Description: Compilation of most of the Fortran files depends on existance of three module files. On VMS the dependency was enforced by listing source files for compilation command in the correct order. It looks like that this approach doesn't always work and compilation fails sometimes. Solution: Hardcoded compilation of the threee files in the make.com file Platforms tested: VMS server with IEEE option Misc. update:
* [svn-r12323] Purpose: Maintenance/bug fixesElena Pourmal2006-05-037-32/+28
| | | | | | | | | | | | Description: Some VMS command files were broken, some needed an update to catch up with the current code distribution. Solution: Fixed Platforms tested: VMS server with IEEE option. Will do more testing after checking out a fresh CVS version. Misc. update:
* [svn-r12322] Purpose: Test some functionsRaymond Lu2006-05-024-5/+733
| | | | | | | | Description: Test some data type functions that are and aren't supposed to work with some data types. Platforms tested: h5committest and fuss.
* [svn-r12321] Purpose:John Mainzer2006-05-022-213/+202
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix Description: Fix two test bugs: 1) Unitialized variable bug in test of H5C_get_entry_status() (in test/cache.c) 2) Incorrect initialization of constant in t_cache when running with MPE. (in testpar/t_cache.c) Solution: 1) Don't test uninitialize variable. 2) Correct initialzation of constant in MPE case. Platforms tested: Tested on Heping and Copper. Misc. update:
* [svn-r12320] Purpose:Quincey Koziol2006-05-0215-133/+137
| | | | | | | | | | code cleanup Description: Finish H5FS->H5CS internal API name changes... Platforms tested: FreeBSD 4.11 (sleipnir) w/ & w/o --enable-codestack
* [svn-r12319] Quincey Koziol2006-05-022-364/+0
| | | | | | | | | | | | Purpose: Rename feature Description: Rename the "function stack" debugging feature to "call stack", so the H5FS* prefix can be used for free space management code. Platforms tested: Not yet, but soon..
* [svn-r12318] James Laird2006-05-016-22/+25
| | | | | | | | | | | | | | | | Purpose: H5CC feature Description: Made H5_CFLAGS change to several more configuration files. Solution: Moved nonessential flags from CFLAGS to H5_CFLAGS for several more platforms. If my guesses about which flags were nonessential were wrong, we'll have Daily Test errors. Platforms tested: mir, cray, copper, juniper (OS X)
* [svn-r12317] Purpose:Quincey Koziol2006-04-3018-1671/+6286
| | | | | | | | | | | | | | | | Code checkpoint Description: More progress on fractal heap, can now re-open an existing heap, although the free space algorithm still needs work. Also, use the new "pinned entry" metadata cache code. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping) Solaris 9 (shanti) Linux 2.4/64 (mir)
* [svn-r12316] Purpose:Quincey Koziol2006-04-296-51/+64
| | | | | | | | | | | | | | | Code cleanup/feature twist Description: Adjust recent H5AC routines to take H5F_t pointers instead of H5C_t pointers, to match the rest of the H5AC routines. This change propagated into a few of the tests, which also had some compiler warnings cleaned up... Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Linux 2.4/64 (mir) w/C++ & FORTRAN
* [svn-r12315] Purpose:Quincey Koziol2006-04-294-15/+10
| | | | | | | | | | | | | Code cleanup, etc. Description: Fix some inconsistent coding in the packet table examples Correct header file issues in C++ packet table wrapper Platforms tested: FreeBSD 4.11 (sleipnir) w/C++ Linux 2.4/64 (mir) w/C++ & FORTRAN
* [svn-r12314] Purpose:Quincey Koziol2006-04-2933-355/+405
| | | | | | | | | | | | | | Code cleanup Description: Big clean up on high-level library code, including: - Removing include of HDF5 private header file(!) - Reduce number of compiler warnings - Untangle header files, etc. Platforms tested: FreeBSD 4.11 (sleipnir) w/C++ Linux 2.4/64 (mir) w/C++ & FORTRAN
* [svn-r12313] Purpose:Quincey Koziol2006-04-292-2/+3
| | | | | | | | | | | Code cleanup Description: Clean up a few minor compiler warnings Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4/64 (mir)
* [svn-r12312] Purpose:James Laird2006-04-281-2/+2
| | | | | | | | | | | | | | | | H5_CFLAGS change Description: Made the threadsafe flags in config/freebsd H5_CFLAGS so that they are not passed on to h5cc. Solution: If user applications need the threadsafe flag to link properly against the threadsafe HDF5 library, we'll see linking errors in make-install when threadsafe is enabled, and can revert this change. Platforms tested: mir only (very minor change)
* [svn-r12311] Purpose:John Mainzer2006-04-2816-798/+7093
| | | | | | | | | | | | | | | | | | | | | | | | | Add pinned entry capability to cache. Description: For frequently accessed cache entries, the protect/unprotect overhead is sometimes a bottleneck. Solution: Allow entries to be pinned in the cache. Pinned entries can't be evicted, but can be flushed or modified. Platforms tested: h5committested -- minus one small typo in test/cache.c whose fix was tested on copper and heping only. Misc. update:
* [svn-r12309] Purpose:Fang Guo2006-04-271-41/+41
| | | | | | | | | | | | Maintenance on Windows Description: change delimiter between preprocessor names from " " to ",". Interl fortran doesn't take " " as delimiter. Solution: Platforms tested: Misc. update:
* [svn-r12308] Purpose:Fang Guo2006-04-271-1868/+1869
| | | | | | | | | | | Maintenance on Windows Description: Update solution file all.sln Solution: Platforms tested: Misc. update:
* [svn-r12307] Purpose:Fang Guo2006-04-271-17/+1
| | | | | | | | | | | | Maintenance on Windows Description: All of the source code files were replaced by a new one. Solution: Platforms tested: Windows XP with VS 6.0 Misc. update:
* [svn-r12306] Purpose:James Laird2006-04-262-39/+52
| | | | | | | | | | | | | | | | Bug fix Description: Removed some extra compiler flags that were being added in configure Solution: After my previous changes, some of autoconf's macros were realizing that we had no CFLAGS defined and were helpfully supplying some to us, which were causing errors on some platforms. Initializing all of the *FLAGS variables prevented this from happening. Platforms tested: mir (minor change)
* [svn-r12305] Frank Baker2006-04-261-2/+3
| | | | | | | Purpose: Add 2006 to Copyright notice. Platforms tested: Visual inspection.
* [svn-r12304] Purpose:Pedro Vicente Nunes2006-04-261-3/+6
| | | | | | | | | | | | | | | bug fix Description: the diff region output was done in verbose mode Solution: avoid it in verbose Platforms tested: linux Misc. update:
* [svn-r12303] Purpose:Pedro Vicente Nunes2006-04-266-7/+7
| | | | | | | | | | | | | | new feature Description: modified the test case for region points, so that there is not an ordered sequence of points that differ, but one with gaps Solution: Platforms tested: linux Misc. update:
* [svn-r12302] Purpose: MaintenanceElena Pourmal2006-04-251-4/+4
| | | | | | | | | | | | | Description: In the past we had Fortran support only for 64bit mode on IRIX64-6.5. This feature was hardcoded in the IRIX configuration file. New automatic Fortran datatypes configuration should support both 32bit and 64bit modes. I finally verified that it worked. Solution: Removed -64 flag from the configuration file. Platforms tested: UCAR IRIX64-6.5 in 32 and 64bit modes. Misc. update:
* [svn-r12301] Purpose:James Laird2006-04-259-98/+106
| | | | | | | | | | | | | | H5_CFLAGS change Description: Converted a few platforms to use H5_CFLAGS to "test the waters" Solution: Modified a few config/* files to use H5_CFLAGS for non-essential flags. Platforms tested: mir, heping
* [svn-r12300] Purpose:MuQun Yang2006-04-251-2/+4
| | | | | | | | | | | | | | Add some comments for scaleoffset filter and correct comments for windows fortran DLL supports. Description: Solution: Platforms tested: Misc. update:
* [svn-r12299] Purpose:Fang Guo2006-04-256-24/+76
| | | | | | | | | | | | Maintenance on Windows Description: ttsafedll will be automatically enabled when using .Net and Intel Add in some instructions for this in applicable places Solution: Platforms tested: Misc. update:
* [svn-r12298] Purpose:Pedro Vicente Nunes2006-04-251-0/+13
| | | | | | | | | | | | one more test file forgotten in the last check in Description: Solution: Platforms tested: Misc. update:
* [svn-r12297] Purpose:Pedro Vicente Nunes2006-04-2516-2646/+2777
| | | | | | | | | | | | | | | | | new feature Description: added support for the printout of dataset region references differences added a new test for this merged the h5diff generator of test files into a single file Solution: Platforms tested: linux 32, 64 solaris Misc. update:
* [svn-r12296] Purpose: MaintenanceBinh-Minh Ribler2006-04-252-33/+33
| | | | | | | | | | | Description: dsets.cpp: added a missing PASSED call to line up output better. tattr.cpp: casted parameters to verify_val properly to fix compilation errors on Windows, introduced from the previous checkin. Platforms tested: Linux 2.4 (heping) - very minor Windows XP
* [svn-r12295] Purpose:James Laird2006-04-2145-132/+129
| | | | | | | | | | | | | | | | | | | Several bug fixes Description: Added config file for Cray X1 (previous file was misnamed) Simplified some code in hyperslab.c test that seemed to have been confusing compiler on Cray X1. Fixed typo in config/commence.am Cleaned up hl/src/Makefile.am Solution: All four fixes should be straightforward. The failure on Cray was very difficult to debug, but involved arithmetic errors. This change seems to fix it. Platforms tested: heping, copper, sol, some Cray X1 (more testing when system comes back up)
* [svn-r12293] Purpose:Quincey Koziol2006-04-215-1/+11
| | | | | | | | | | Bug fix Description: Fix missing error code from flexible parallel removal Platforms tested: IBM AIX (copper) w/parallel
* [svn-r12292] Purpose:Quincey Koziol2006-04-2037-7674/+131
| | | | | | | | | | | | | Code maintenance Description: Remove flexible parallel code Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 (heping) Solaris 2.9 (shanti) Linux 2.4/64 (mir)
* [svn-r12289] updated version to 1.8.0-alpha2before_removing_fphdf5Albert Cheng2006-04-205-15/+15
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