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* Instead of duplicating H5F_shared_block_write() and _read() wholesale inreduce-h5f-duplicationDavid Young2020-03-061-69/+2
| | | | H5F_block_write() and _read(), make the latter functions call the former.
* Merge pull request #2351 in HDFFV/hdf5 from ↵David Young2020-03-052-6/+2
|\ | | | | | | | | | | | | ~DYOUNG/werror:b-bye-HDpthread_self to develop * commit '224cb4a03406ed72e02d026efeab47fdf7f6b33b': Use a naked pthread_self() call in the HDF5 thread wrappers.
| * Use a naked pthread_self() call in the HDF5 thread wrappers.David Young2020-02-062-6/+2
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* | Merge pull request #2424 in HDFFV/hdf5 from ~DYOUNG/hdf5:passed-do-while to ↵David Young2020-03-0519-254/+253
|\ \ | | | | | | | | | | | | | | | | | | | | | develop * commit 'b53eb6fb29e556c482ce20fa7a21485c99beea74': Add semicolons to more PASSED() invocations. So that I can use PASSED(); anywhere a statement can go, #define PASSED() with a do-while wrapper.
| * | Add semicolons to more PASSED() invocations.David Young2020-02-284-5/+5
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| * | So that I can use PASSED(); anywhere a statement can go, #define PASSED() withDavid Young2020-02-2815-249/+248
| | | | | | | | | | | | a do-while wrapper.
* | | Merge pull request #2434 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-03-042-16/+16
|\ \ \ | | | | | | | | | | | | | | | | | | | | * commit '24298a031f0b7f6a04364cfbfbdd9c8b6cc1a038': Remove system command from valgrind reports Whitespace
| * | | Remove system command from valgrind reportsAllen Byrne2020-03-021-2/+2
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| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-03-012-3/+3
| |\ \ \ | |/ / / |/| | | | | | | | | | | * commit 'a01ac97ba509e51905b816e8a29b5d0b2bc8be87': Fix incorrect FUNC_LEAVE macro (should match FUNC_ENTER_*_TAG).
* | | | Merge pull request #2427 in HDFFV/hdf5 from ~JAKE.SMITH/hdf5:develop to developJake Smith2020-03-012-3/+3
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | * commit '2d9a81878d05732725f96d7d9b20ada8dfd2a146': Fix incorrect FUNC_LEAVE macro (should match FUNC_ENTER_*_TAG).
| * | | | Fix incorrect FUNC_LEAVE macro (should match FUNC_ENTER_*_TAG).Jacob Smith2020-02-282-3/+3
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| | * | WhitespaceAllen Byrne2020-02-291-14/+14
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* | | Merge pull request #2431 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/type_cast to ↵Kimmy Mu2020-02-291-2/+2
|\ \ \ | |/ / |/| | | | | | | | | | | | | | develop * commit 'b5cf422799797cf0b573cc9992f866381bd63054': revert type cast
| * | revert type castkmu2020-02-281-2/+2
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* | | Merge pull request #2419 in HDFFV/hdf5 from revise_get_offset to developQuincey Koziol2020-02-285-37/+21
|\ \ \ | |/ / |/| | | | | | | | * commit '38af6ee3d59a8e836f4c62dd533ddabd914c7abb': Switch the 'get offset' operation from a dataset 'get' callback to a [native] dataset 'optional' operation.
| * | Switch the 'get offset' operation from a dataset 'get' callback to a [native]Quincey Koziol2020-02-285-37/+21
|/ / | | | | | | dataset 'optional' operation.
* | Merge pull request #2411 in HDFFV/hdf5 from ~DYOUNG/werror:darwin-barriers ↵Larry Knox2020-02-281-1/+139
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '803d805c74466a9d736455930b17de2d9f5cb02d': Complete the comment on thread_main(), explaining why the barrier is used. The first implementation seemed to allow for the possibility that a thread could block at the barrier, wake and exit the barrier, re-acquire the barrier lock and increase `nentered` before the other blocked threads woke and checked `nentered % count == 0`. Then the other blocked threads would check `nentered % count == 0` and, finding it false, go back to sleep in the barrier. This new implementation waits for a looser condition to obtain so that threads don't go back to sleep in the barrier. Test the right condition for the EBUSY return in pthread_barrier_destroy(). s/exit_failure/EXIT_FAILURE/g Implement pthread_barrier(3) for Darwin using a counter, condition variable, and mutex. Untested.
| * | Complete the comment on thread_main(), explaining why the barrier is used.David Young2020-02-271-1/+9
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| * | The first implementation seemed to allow for the possibility that a threadDavid Young2020-02-271-1/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | could block at the barrier, wake and exit the barrier, re-acquire the barrier lock and increase `nentered` before the other blocked threads woke and checked `nentered % count == 0`. Then the other blocked threads would check `nentered % count == 0` and, finding it false, go back to sleep in the barrier. This new implementation waits for a looser condition to obtain so that threads don't go back to sleep in the barrier.
| * | Test the right condition for the EBUSY return in pthread_barrier_destroy().David Young2020-02-271-1/+1
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| * | s/exit_failure/EXIT_FAILURE/gDavid Young2020-02-271-2/+2
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| * | Implement pthread_barrier(3) for Darwin using a counter, condition variable,David Young2020-02-271-0/+123
| | | | | | | | | | | | and mutex. Untested.
* | | Merge pull request #2415 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-02-282-2/+2
|\ \ \ | | | | | | | | | | | | | | | | * commit '811988f82c182012704942d333ee7800f4a78349': Modfy expression to match mpicc build with Intel as intel compiler, not gcc.
| * | | Modfy expression to match mpicc build with Intel as intel compiler, notLarry Knox2020-02-272-2/+2
|/ / / | | | | | | | | | gcc.
* | | Merge pull request #2414 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2020-02-271-6/+19
|\ \ \ | | | | | | | | | | | | | | | | * commit 'dde7e73d9fe8cc3b849767790aa9b13ee2d600cd': Fixed issue building HDF5 with NAG Fortran 7.0.
| * | | Fixed issue building HDF5 with NAG Fortran 7.0.M. Scot Breitenfeld2020-02-271-6/+19
| | | | | | | | | | | | | | | | | | | | | | | | Accounted for the additon of half precision floating-point with a KIND=16. HDFFV-11033
* | | | Merge pull request #2412 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-02-271-2/+3
|\ \ \ \ | |/ / / |/| | | | | | | | | | | * commit '6686cac564f5d0015a32b92e4478002069c973ee': Add java version and reference libsettings
| * | | Add java version and reference libsettingsAllen Byrne2020-02-271-2/+3
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* | | Merge pull request #2409 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-02-2716-266/+257
|\ \ \ | |/ / |/| | | | | | | | | | | * commit '13f5b3aee20d1d65f56dc08f088e0f218da5cf37': Update examples and fix old version references. Move MODEL check to before usage in CTestScript.cmake.
| * | Update examples and fix old version references.Allen Byrne2020-02-2615-259/+249
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| * | Move MODEL check to before usage in CTestScript.cmake.Allen Byrne2020-02-262-7/+8
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* | Merge pull request #2405 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-02-255-15/+40
|\ \ | | | | | | | | | | | | | | | * commit '2af8a87af0d7a1589a4df22d16b2d2513876e7a9': Copy generated files instead creating twice Fix standalone link
| * | Copy generated files instead creating twiceAllen Byrne2020-02-251-8/+32
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| * | Fix standalone linkAllen Byrne2020-02-254-7/+8
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* | Merge pull request #2398 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-02-254-16/+12
|\ \ | | | | | | | | | | | | * commit '04e67af8f968b2c6f50cb42990d3dfa79aa353d9': Fix Fortran macro use and jni comment
| * | Fix Fortran macro use and jni commentAllen Byrne2020-02-254-16/+12
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* | Merge pull request #2394 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-02-246-22/+172
|\ \ | | | | | | | | | | | | | | | | | | | | | * commit 'cf58730177d60fd7311582a29539d87f10a7d88e': Update Windows platforms HDFFV-11036 add release note HDFFV-11036 add file compare test process Correct usage of add_compile_definitions
| * | Update Windows platformsAllen Byrne2020-02-241-5/+1
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-02-241-0/+2
| |\ \ | |/ / |/| | | | | | | | * commit 'd24afb233383aa6c945fad430eb1b66edc4d6c63': Add missing MANIFEST entry, ./doc/code-conventions.md .
* | | Merge pull request #2385 in HDFFV/hdf5 from manifest-repair to developDavid Young2020-02-241-0/+2
|\ \ \ | | | | | | | | | | | | | | | | * commit '921278c604b3129c1ff5066f0a2b94abcb3aa8f7': Add missing MANIFEST entry, ./doc/code-conventions.md .
| * | | Add missing MANIFEST entry, ./doc/code-conventions.md .David Young2020-02-201-0/+2
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| | * | HDFFV-11036 add release noteAllen Byrne2020-02-241-1/+8
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| | * | HDFFV-11036 add file compare test processAllen Byrne2020-02-244-13/+162
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| | * | Correct usage of add_compile_definitionsAllen Byrne2020-02-231-3/+1
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* | | Merge pull request #2390 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developLarry Knox2020-02-2287-337/+436
|\ \ \ | | | | | | | | | | | | | | | | * commit '666205a55f01698a71484f504bc8eb9541800f25': TRILAB-142 Change minimum CMake version to 3.12
| * | | TRILAB-142 Change minimum CMake version to 3.12Allen Byrne2020-02-2187-337/+436
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* | | Merge pull request #2388 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-02-214-11/+11
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit '380fe7cfdfd98461cb1bff54bad4de0ee9904ad6': Fix always true issue because member is not dynamically allocated CMake cleanup HDFFV-11032 fix JNI call
| * | | Fix always true issue because member is not dynamically allocatedAllen Byrne2020-02-211-7/+7
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| * | | CMake cleanupAllen Byrne2020-02-212-2/+2
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| * | | HDFFV-11032 fix JNI callAllen Byrne2020-02-211-2/+2
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