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* Merge remote-tracking branch 'origin/develop' into namespace_cleanup_01Quincey Koziol2020-08-07147-952/+1997
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| * Merge pull request #2740 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:code_tidy to ↵Dana Robinson2020-08-07110-657/+546
| |\ | | | | | | | | | | | | | | | | | | develop * commit '5ce2a178043d9749d30076a2e62249d9998c40ec': Removes staff email addresses from the repository Removes redundant C library headers from hl library
| | * Removes staff email addresses from the repositoryDana Robinson2020-08-07110-657/+546
| |/ | | | | | | Removes redundant C library headers from hl library
| * Merge pull request #2730 in HDFFV/hdf5 from ↵Dana Robinson2020-08-0639-310/+1457
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:file_locking_squash_2 to develop * commit '47ad0ac7237b464e939fe54dd129a151944d9706': Renames BEST-EFFORT to BEST_EFFORT for file locking env var Updated the file locking Fortran property list wrappers and added a test. Fixed missing parens in VFDs Minor change to header comments in file locking C++ changes. Squash merge of file locking fixes
| | * Renames BEST-EFFORT to BEST_EFFORT for file locking env varDana Robinson2020-08-067-9/+9
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| | * Merge branch 'develop' into file_locking_squash_2Dana Robinson2020-08-0630-851/+880
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| | * | Updated the file locking Fortran property list wrappers and addedDana Robinson2020-08-045-88/+86
| | | | | | | | | | | | | | | | a test.
| | * | Fixed missing parens in VFDsDana Robinson2020-08-035-5/+5
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| | * | Minor change to header comments in file locking C++ changes.Dana Robinson2020-08-031-2/+2
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| | * | Squash merge of file locking fixesDana Robinson2020-08-0339-309/+1458
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* | | | Switch H5VM inline routines back to single underscope and put a comment in ↵Quincey Koziol2020-08-0640-166/+214
| | | | | | | | | | | | | | | | their header about this naming
* | | | Clean up private / package / static namespace issues (function naming, whichQuincey Koziol2020-08-06362-10270/+6711
|/ / / | | | | | | | | | | | | | | | header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
* | | Merge pull request #2715 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:fix_vlen_ref to ↵Jerome Soumagne2020-08-065-4/+338
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | develop * commit 'ef6db167a86e6c065d46963dbd75cd325fe83813': H5R: fix encoding of references that are part of compound types
| * | | H5R: fix encoding of references that are part of compound typesJerome Soumagne2020-07-285-4/+338
| | | | | | | | | | | | | | | | Add corresponding test and some debug information
* | | | Merge pull request #2738 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-08-067-1444/+1583
|\ \ \ \ | |_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '91ca481ff152e7a6b0326fcdb59e506141d2d32a': Reverts H5FDsplitter.c changes so they don't conflict with Quincey's big cleanup patch Fixes -Wnull-dereference warnings around the cache logging calls Fixes -Wnull-dereference warning in hl/src/H5DS.c Adds -Wnull-dereference to the warnings we ignore in flex/bison generated code (that we have no control over). Fixes warnings in the splitter VFD and tests
| * | | Reverts H5FDsplitter.c changes so they don't conflict with Quincey'sDana Robinson2020-08-061-38/+56
| | | | | | | | | | | | | | | | big cleanup patch
| * | | Fixes -Wnull-dereference warnings around the cache logging callsDana Robinson2020-08-061-30/+40
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| * | | Fixes -Wnull-dereference warning in hl/src/H5DS.cDana Robinson2020-08-061-4/+3
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| * | | Adds -Wnull-dereference to the warnings we ignore in flex/bisonDana Robinson2020-08-064-1301/+1392
| | | | | | | | | | | | | | | | generated code (that we have no control over).
| * | | Fixes warnings in the splitter VFD and testsDana Robinson2020-08-062-165/+186
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* | | Merge pull request #2737 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-08-063-34/+43
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '65e92e1d56dd2e04ebe7b7713fee9e9e38cd8849': Warning fixes in tools and h5test.c
| * | | Warning fixes in tools and h5test.cDana Robinson2020-08-063-34/+43
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* | | Merge pull request #2733 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-08-0410-508/+529
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit 'be02566f49f953bc80c5b5018871138e201ea633': Fixes indenting in tools test scripts
| * | | Fixes indenting in tools test scriptsDana Robinson2020-08-0410-508/+529
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* | | Merge pull request #2727 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-08-0217-309/+308
|\ \ \ | |_|/ |/| | | | | | | | | | | | | | | | | to develop * commit 'b9de162eae800a9459f0f1f07d2b043f73f8a907': Minor normalizations with 1.12 branch Fixed bad parens in H5trace.c
| * | Minor normalizations with 1.12 branchDana Robinson2020-08-0116-266/+265
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| * | Merge branch 'develop' into develop_minorDana Robinson2020-08-012-5/+8
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* | | Merge pull request #2723 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-08-019-414/+331
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '08dca47475f41e93348cf0c2ea708e787c232014': Minor normalizations with hdf5_1_10
* \ \ \ Merge pull request #2722 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-07-312-5/+8
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | * commit 'fc57490e02835ddfce644135e93e893f77b379d3': Mingw copy disabled
| * | | | Mingw copy disabledAllen Byrne2020-07-312-5/+8
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| | * | Fixed bad parens in H5trace.cDana Robinson2020-07-311-43/+43
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| * | Minor normalizations with hdf5_1_10Dana Robinson2020-07-319-414/+331
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* | Merge pull request #2720 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-07-3111-312/+220
|\ \ | | | | | | | | | | | | | | | | | | to develop * commit 'c8ba30d965f0342e5725a11cb562dfb22c8a8d24': Minor normalization with 1.10 branch
| * \ Merge branch 'develop' into develop_minorDana Robinson2020-07-3071-4714/+4091
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* | | Merge pull request #2718 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-07-3010-134/+126
|\ \ \ | | | | | | | | | | | | | | | | * commit 'ff4a9d0ec2e85cf15f769006e92e756a79869ab8': Warnings reduction in tools
| * | | Warnings reduction in toolsAllen Byrne2020-07-3010-134/+126
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* | | Merge pull request #2716 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-07-299-27/+27
|\ \ \ | | | | | | | | | | | | | | | | | | | | * commit '6a1cf090c6a2f970084c714a2f75a31d68a0a6a8': Correct reference file Correct h5diff filenames
| * | | Correct reference fileAllen Byrne2020-07-291-2/+2
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| * | | Correct h5diff filenamesAllen Byrne2020-07-299-29/+29
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* | | Merge pull request #2711 in HDFFV/hdf5 from bmr-HDFFV-11120 to developBinh-Minh Ribler2020-07-292-1/+29
|\ \ \ | |_|/ |/| | | | | | | | | | | | | | | | | Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869) * commit '707e30c6be1954c0027374124207e46caae68cbc': Fixed typos in error messages. Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)
| * | Fixed typos in error messages.Binh-Minh Ribler2020-07-281-3/+3
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| * | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Binh-Minh Ribler2020-07-2223-236/+162
| |\ \ | | | | | | | | | | | | bmr-HDFFV-11120
| * | | Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)Binh-Minh Ribler2020-07-222-1/+29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: When a buffer overflow occurred because a name length was corrupted and became very large, h5dump produced a segfault on one file and a memcpy parameter overlap on another file. This commit added checks that detect a read pass the end of the buffer to prevent these error conditions. Platforms tested: Linux/64 (jelly) SunOS 5.11 (emu)
* | | | Merge pull request #2714 in HDFFV/hdf5 from ↵Dana Robinson2020-07-284-5/+99
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5s_set_extent_none to develop * commit 'e4603ff8a171e82de6373ba6eddcf59d5eeab5aa': Updated the Java tests to deal with H5Sset_extent_none changes Fixed additional typos in tselect.c comments. Fixes typo in tselect.c Updates H5Sset_extent_none() to set H5S_NULL
| * | | | Updated the Java tests to deal with H5Sset_extent_none changesDana Robinson2020-07-281-1/+1
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| * | | | Fixed additional typos in tselect.c comments.Dana Robinson2020-07-281-2/+2
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| * | | | Fixes typo in tselect.cDana Robinson2020-07-281-1/+1
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| * | | | Updates H5Sset_extent_none() to set H5S_NULLDana Robinson2020-07-283-4/+98
| | |/ / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | The API call used to set the internal H5S_NO_CLASS value which produced errors when such a dataspace was passed to many other API calls. Fixes HDFFV-11027
* | | | Merge pull request #2697 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-07-2864-4679/+3942
|\ \ \ \ | |/ / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '5857bb817019b8513f796c9564de3f1845f9a44a': Only one line needed to compare Revert err file revert error-stack enable Add release notes for tools add test file ext Correct file name in test Tools refactor
| * | | Only one line needed to compareAllen Byrne2020-07-271-0/+1
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