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* [svn-r7567] Frank Baker2003-10-076-1237/+1340
| | | | | | | | | | | | | | | Purpose: Alphabetic sort of RM function entries Additional and modified HTML coding to accomodate HTMLdoc and automated PDF generation Description: Solution: Platforms tested: Misc. update:
* [svn-r7566] Frank Baker2003-10-071-236/+284
| | | | | | | | | Purpose: Aphabetic sort of RM function entries Integrated Fortran90 APIs -- h5acreate_f and h5aclose_f Platforms tested: IE 5, Safari
* [svn-r7565] Frank Baker2003-10-071-194/+212
| | | | | | | | | Purpose: Aphabetic sort of RM function entries Minor formatting Platforms tested: IE 5, Safari
* [svn-r7564] Frank Baker2003-10-071-66/+69
| | | | | | | | Purpose: Aphabetic sort of RM function entries Platforms tested: IE 5, Safari
* [svn-r7561] Purpose:Quincey Koziol2003-10-077-2/+191
| | | | | | | | | | | | Feature add Description: Add a few new fields to the H5G_stat_t structure, to allow more information about the object header to be retrieved. Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
* [svn-r7559] Purpose:Quincey Koziol2003-10-0711-9/+341
| | | | | | | | | | | | | | Add feature Description: Add H5Fget_freespace() routine, to check the amount of free space in a file. This information is only valid until the file is closed currently, however (until we start recording the free space information in the file itself). Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
* [svn-r7558] Snapshot version 1.7 release 5HDF Admin2003-10-076-15/+23
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* [svn-r7553] Purpose:Quincey Koziol2003-10-062-79/+17
| | | | | | | | | | | | | | | | | | | | | | | | | | | Improved algorithm (bug fix, sorta) Description: The internal algorithm for adding new IDs in the ID manager code (H5I) was adding new IDs to the front of the linked list and never adjusting the order of the items on the list (unless an ID was deleted). If many new objects were created, they would push earlier ones _way_ down the list (especially if the objects were being leaked in the application, as they appear to be in the current HDF-EOS5 library) and would cause O(n) search time for items on the list. The ID caching code in the ID manager was avoiding this behavior sometimes, but it was adding IDs that were looked up to the very tail of the cache and they would frequently leave the cache before helping. Solution: Implemented a "move to front" scheme for the linked list of IDs, which improves the lookup situation for frequently accessed objects. Removed ID caching code now, as the "move to front" algorithm actually works better. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r7551] Purpose:Quincey Koziol2003-10-063-32/+3
| | | | | | | | | | | | | | | Bug/feature fix. Description: Relax restriction on parallel writing to compact datasets to allow partial I/O. Updates to reference manual mentioning the issues involved are delayed until reference manual 'lock' is removed later this week. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r7549] Purpose:Quincey Koziol2003-10-061-0/+3
| | | | Add new name datatype in attributes files
* [svn-r7542] Purpose:Quincey Koziol2003-10-0595-2505/+2550
| | | | | | | | | | | | | Bug fixes and code cleanup Description: Whitespace removal. Added testfiles for named datatypes in attributes. Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
* [svn-r7541] Purpose:Quincey Koziol2003-10-051-1/+3
| | | | | | | | | | | | | | | Bug fixes and code cleanup Description: Corrected output of array separator when vlen separator was needed. datatypes. Parts of formatting cleanup to greatly reduce the amount of trailing whitespace emitted in output. Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
* [svn-r7540] Purpose:Quincey Koziol2003-10-055-677/+687
| | | | | | | | | | | | | | | | | | | | | Bug fixes and code cleanup Description: Changes to h5dump code: - Dump shared datatypes for any class of datatype, not just compound datatypes. - Cleaned up formatting to greatly reduce the amount of trailing whitespace emitted in output. Also removed some spurious blank lines from named datatype output. Added code to generate named datatype attribute test file. Added tests for dumping named datatypes in attributes for both DDL and XML output. Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
* [svn-r7539] Purpose:Quincey Koziol2003-10-052-56/+221
| | | | | | | | | | | | | | | | | Bug fixes and code cleanup Description: Re-worked ohdr test to use modification time messages instead of symbol table messages, now that the library correctly tries deleting the local heap and B-trees for the symbol tables (which didn't exist and caused the test to fail). Added tests for using named datatypes in attributes to verify that the reference counts are being tracked correctly, etc. Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
* [svn-r7538] Purpose:Quincey Koziol2003-10-0523-294/+922
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fixes and code cleanup Description: Lots of changes here: - Fixed bug #691 - when shared datatypes are used in attributes they are incorrectly copied into the attribute instead of referring the the named datatype in the file. This required bumping the version of the attribute message. The new version of the attribute message is only written out when a shared datatype is used in the attribute. [Also, this format change made the size of the attribute smaller.] - Added information to attribute debugging routine so that shared datatypes are displayed correctly with the h5debug tool. - Refactored the H5O* routines to extract code that was common to several routines into subroutines to call. - Added 'link' method for H5O message sub-classes, which increments the link count on shared objects when a message is created which shares them. - Corrected [unreported] bug where the link count was not being decremented on the shared object when a object header message with a reference to that object was deleted from the file. - Reduced size of shared message from 49 bytes (which was incorrect anyway and should have been 48 bytes) to 10 bytes, which required bumping the version of "shared" messages. - Refactored some of the shared datatype routines to allow for easier queries of "committedness" internally to the library and also added routine to easily increment/decrement the reference count of a shared datatype. Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
* [svn-r7529] Purpose: Code cleanupElena Pourmal2003-10-014-34/+36
| | | | | | | | | | | | | Description: On Linux systems valdrind tool complained about memroy leaks in the following statements like if(!a) free(a); Solution: replaced the statements with if ( a != NULL) free(a); Platforms tested: eirene (too small for committest) Misc. update:
* [svn-r7528] Purpose:Bill Wendling2003-09-301-55/+51
| | | | | | | | | | | | | | | | | | | | | | | | Bug Fix Description: The FPHDF5 code couldn't create a dataset then access it. Turns out that the "O_find_in_ohdr" code was protecting the object header which pulls it into the cache then unprotecting it. However, this caused the cache entry to be blown away and THEN we'd try to reread the entry (via AC_protect) but it didn't have all of the data that the find_in_ohdr function decodes for us decoded. It was also kind of unnecessary since we can just protect then call O_find_in_ohdr. Solution: Removed the AC_protect and AC_unprotect from O_find_in_ohdr. Called AC_protect before calling the O_find_in_ohdr function. Platforms tested: Linux (Fortran, C++) IRIX (parallel, Fortran) Sun (Fortran) Misc. update:
* [svn-r7527] Purpose:Quincey Koziol2003-09-309-253/+265
| | | | | | | | | | | | Code cleanup Description: Clean up a few loose ends and warnings for the 1.6 compatibility changes to the error API. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r7526] Purpose:Quincey Koziol2003-09-301-0/+1
| | | | | | | | | | Fix typo in comment. Description: Looks like a cut & paste error. Platforms tested: None - just comment fixup
* [svn-r7525] Purpose: Update MANIFESTRaymond Lu2003-09-301-1/+1
| | | | Misc. update: clean it up for error test
* [svn-r7524] *** empty log message ***Raymond Lu2003-09-292-15/+15
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* [svn-r7523] Purpose: bug fixRaymond Lu2003-09-291-2/+5
| | | | | | | | Description: Standard output of Error API test has some non-standard information Solution: use sed to remove non-standard information Platforms tested: h5committest
* [svn-r7522] *** empty log message ***Raymond Lu2003-09-291-2/+1
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* [svn-r7521] Purpose: bug fixRaymond Lu2003-09-291-1/+1
| | | | | | | | | Description: The standard output from Error API test has some non-standard message like path name or line number. Solution: use sed to remove any non-standard information in testerror.sh Platforms tested: h5committest
* [svn-r7520] Purpose: bug fixRaymond Lu2003-09-292-2/+34
| | | | | | | | | Description: add backward compatibility for thread safety Platforms tested: RH 8(fuss) Misc. update:
* [svn-r7519] Purpose:Raymond Lu2003-09-292-3/+10
| | | | | | | Description: add backward compatibility for thread safety. Platforms tested: RH 8(fuss)
* [svn-r7518] Purpose:Albert Cheng2003-09-271-1/+1
| | | | | | | Corrected an error entry. Platforms tested: bin/chkmanifest
* [svn-r7517] Purpose:HDF Admin2003-09-261-1/+0
| | | | | | | | | | | | bug fix Description: Removed an extra export command in the parse of setenvN Platforms tested: Tested by hand. Misc. update:
* [svn-r7513] Purpose: Disable Error API testRaymond Lu2003-09-251-1/+2
| | | | | | | | | | Description: The error test script compares the error messages to the standard output. The file names and line numbers in the messages can be different for users. Solution: Temporarily disable the test until find a good solution. Platforms tested: None. Disabling a test.
* [svn-r7510] Purpose:Albert Cheng2003-09-251-0/+1
| | | | Updated.
* [svn-r7509] Purpose:Albert Cheng2003-09-252-1/+81
| | | | | | | | | | Added the entry of document of the three basic performance tools. The information was provided by Robb long time ago. Platforms tested: Viewed by IE. Misc. update:
* [svn-r7508] Purpose: shell script file to compare error test output with ↵Raymond Lu2003-09-241-0/+100
| | | | standard one.
* [svn-r7507] *** empty log message ***Raymond Lu2003-09-2425-50/+1250
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* [svn-r7506] Purpose: Add backward compatbility with v1.6 for Error API; ↵Raymond Lu2003-09-241-2/+9
| | | | | | | | | | | | | | | change error tests to avoid printing error messages. Description: If enable-hdf5v1_6 is configured in, make some functions compatible with v1.6. Error test program print out some error messages as it succeeds. Solution: Use #ifdef H5_WANT_H5_V1_6_COMPAT statements. Use shell script to compare error test output with the standard one. Platforms tested: h5committest
* [svn-r7504] Purpose:Albert Cheng2003-09-231-1/+0
| | | | | | | | | | | | | | | | Bug fix Description: The op-snapshot checkout "ate" the next option by mistake. Solution: Remove the extra shift. Platforms tested: Can't really test it without doing a real snapshot test. Pretty sure it is correct and will watch the result tomorrow. Misc. update:
* [svn-r7502] Snapshot version 1.7 release 4HDF Admin2003-09-216-5283/+4160
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* [svn-r7501] Purpose:Pedro Vicente Nunes2003-09-191-0/+1
| | | | | | | | | added the Dependencies file of h5repack Makefile to the list Misc. update:
* [svn-r7500] Pedro Vicente Nunes2003-09-191-0/+0
| | | | | | | | | | | | | | | | Purpose: added the Dependencies file to the folder tested on IRIX b Description: Solution: platforms tested: Misc. update:
* [svn-r7499] Purpose:Pedro Vicente Nunes2003-09-191-1/+1
| | | | | | | | | | | | added h5repack to the list of tools to make check Platforms tested: linux (small change) Misc. update:
* [svn-r7498] Purpose:Quincey Koziol2003-09-1910-72/+50
| | | | | | | | | | | Code cleanup Description: Clean up various warnings and parameter mis-matches, etc. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to need h5committest
* [svn-r7497] Purpose:Pedro Vicente Nunes2003-09-194-0/+227
| | | | | | | | | | | added the new tool h5repack right now it just contains source files with an empty main Platforms tested: linux (small change) Misc. update:
* [svn-r7496] Purpose:Pedro Vicente Nunes2003-09-193-4144/+5276
| | | | | | | | | | | | included the new tool h5repack in the configure files Platforms tested: linux (small change) Misc. update:
* [svn-r7495] Purpose:Bill Wendling2003-09-194-59/+2
| | | | | | | | | | | | | | | | Removed Dead Code Description: Some of the FPHDF5 code was dead (I thought it'd be useful at one point, but was wrong). Solution: Removed Platforms tested: Linux (FPHDF5 specific. No need for h5committest) Misc. update:
* [svn-r7494] Purpose:Quincey Koziol2003-09-197-703/+792
| | | | | | | | | | | | | | | | | | Bug fix Description: Buffer for decoding superblock's driver information was too small when using some VFDs (like the multi-file VFD). Also made FPH5 code more portable and obvious when it's broadcasting the superblock from the captain process to the other clients. Solution: Allocate the buffer for the driver information dynamicly Platforms tested: Copper No h5committest because it's already working on other platforms.
* [svn-r7492] Description:Quincey Koziol2003-09-181-0/+4
| | | | | | | | | Disable "big" parallel tests until I get a chance to look into the problems (probably during/after the workshop). Platforms tested: Eyeballed Too minor to require h5committest
* [svn-r7491] Purpose:Bill Wendling2003-09-182-115/+182
| | | | | | | | | | | | | FPHDF5 Update Description: Added locking/unlocking to the AC_protect/AC_unprotect calls. The SAP does all of the caching so nothing should be saved on the client side. So, when the client unlocks the metadata, it can destroy it. The metadata is always read from the SAP during a lock. Platforms tested: Linux (FPHDF5 specific change. No need for h5committest)
* [svn-r7490] Purpose:Bill Wendling2003-09-181-1/+17
| | | | | | | | | | | | | | | Update Description: Removed the call to H5HL_peek Platforms tested: Modi4 (paralle, Fortran) Sol (Fortran) Linux (C++, Fortran) Copper (Parallel, Fortran) Misc. update:
* [svn-r7489] Purpose:Bill Wendling2003-09-1823-1417/+1654
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Update Description: A lot of modifications for the FPHDF5 stuff: H5AC.c H5ACprivate.h - Removed AC_find (it's replaced with AC_protect and AC_unprotect). Added flushing if it's an FPHDF5 driver and we're doing an AC_set or AC_unprotect with the dirty flag set. H5B.c - Split up the B_flush function into different functions since the one function was doing serialization which is better left as a separate entity. H5D.c - Removed some FPHDF5 code that was incorrect H5F.c - Split up the F_flush function so that it no longer allocates file space. Created new functions (F_init_superblock, F_read_superblock, and F_write_superblock) for greater modularity and so that the FPHDF5 non-captain processes can read the superblock after the captain process writes it. H5FD.c - Error message correction. H5FDfphdf5.c - Removed MPI barrier call that wasn't needed. H5FPclient.c H5FPserver.c - Modified so that if a process requests data that isn't exactly aligned, we can return it if we have the block that contains the requested address. H5G.c H5Gent.c H5Gnode.c H5HL.c H5HLpkg.h H5HLprivate.h H5Oefl.c - Removed the H5HL_peek function since it was doing a (now unsafe) holding of the information in the cache. Replaced with protect and unprotect calls. H5TB.c - Error fix. The TB_dless function wasn't working properly. H5Gstab.c - Format change. H5err.txt H5Edefin.h H5Einit.h H5Epubgen.h H5Eterm.h - Added new error code. Platforms tested: Modi4 (paralle, Fortran) Sol (Fortran) Linux (C++, Fortran) Copper (Parallel, Fortran) Misc. update:
* [svn-r7488] Purpose:Albert Cheng2003-09-181-3/+7
| | | | | | | | | | | | | Improvement Description: The -w timeout option is not supported by all hosts. Added the "ping -c 3" possible PING command. Platforms tested: Tested in eirene by hand only. Misc. update:
* [svn-r7482] Purpose:Quincey Koziol2003-09-161-1/+2
| | | | | | | | | | | | | | | | | Bug fix Description: The MPI_File_set_size() routine on ASCI Red is not able to extend files so that they are larger than 2GB. Solution: Add an extra macro which controls whether MPI_File_set_size() can handle >2GB offsets or if our "older" way of reading a byte, then writing a byte at the appropriate offset should be used. Platforms tested: FreeBSD 4.9 (sleipnir) h5committest
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