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* [svn-r24480] Description:Quincey Koziol2013-11-303-148/+153
| | | | | | | | | | | Bring r24479 from 1.8 branch to trunk: Fix ph5diff worker command handling so it can correctly respond to situations where there's no work to perform. Also, a few minor code cleanups. Tested on: Mac OSX/64 10.9.0 (amazon) w/parallel (too minor to require h5committest)
* [svn-r24476] Description:Quincey Koziol2013-11-308-28/+29
| | | | | | | | | Remove duplicate "intent" flags from top & shared file structures, leaving them only in the shared file structure. Tested on: Mac OSX/64 10.9.0 (amazon) w/gcc 4.8, both parallel & serial (too minor to require h5committest)
* [svn-r24472] remove line for file that does not existAllen Byrne2013-11-271-1/+0
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* [svn-r24471] JAVA-1798: Add the testfiles for hdf-java and the h5dump tests ↵Allen Byrne2013-11-2711-21/+2541
| | | | | | including the test to read filter data. Tested: cmake and autotools - local linux
* [svn-r24467] tfilters.h5 was created and checked in on 21 Feb 05, rev 10060, ↵Allen Byrne2013-11-264-21/+27
| | | | | | | | and never regenerated. The code for scaleoffset continued to change and the number of params for scaleoffset changed from 7 to 20 on the checkin of 23 Mar 05, rev 10384. The h5dump tests only looked at headers and never the data. Data reads would fail with invalid number of params (7 expected 20). Regenerated file and replacement ddls updated. New h5dump test will be added to read the data.
* [svn-r24465] Snapshot version 1.9 release 169HDF Tester2013-11-2513-26/+26
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* [svn-r24463] Issue 8484 - Segfault during H5Fopen of corrupt file. I put a ↵Raymond Lu2013-11-221-1/+1
| | | | | | condition check to make sure a pointer isn't NULL. Tested on jam - very simple change.
* [svn-r24432] Update examples package install location and text filesAllen Byrne2013-11-123-74/+93
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* [svn-r24416] Fixed some compiler warnings in the dsets test.Dana Robinson2013-11-071-17/+19
| | | | | | | | Tested on: 32-bit LE linux (jam) (These are just minor casting changes in the tests, hence the minimal testing.)
* [svn-r24412] Updated information on how to build examples with cmake ↵Allen Byrne2013-11-072-16/+82
| | | | installed binary.
* [svn-r24411] Correct file generationAllen Byrne2013-11-073-394/+405
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* [svn-r24408] Add compound integer tests filesAllen Byrne2013-11-067-0/+2012
| | | | Tested: local linux cmake
* [svn-r24403] Cleanup temp test filesAllen Byrne2013-11-041-2/+2
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* [svn-r24400] Maintenance: When the libraries are built and tested in place, ↵Elena Pourmal2013-11-038-7/+15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | several files are left behind by "make distclean" (see below); modified appropriate Makefile.am files and ran bin/reconfigure to create Makefile.in to fix the problem. Here is the list of the files "make disclean" doesn't remove: tools/h5dump/testfiles tools/h5repack/testfiles/h5diff_attr1.h5 tools/h5repack/testfiles/tfamily00000.h5 tools/h5repack/testfiles/tfamily00010.h5 tools/h5repack/testfiles/tfamily00002.h5 tools/h5repack/testfiles/tfamily00004.h5 tools/h5repack/testfiles/tfamily00006.h5 tools/h5repack/testfiles/tfamily00008.h5 tools/h5repack/testfiles/tfamily00001.h5 tools/h5repack/testfiles/tfamily00003.h5 tools/h5repack/testfiles/tfamily00005.h5 tools/h5repack/testfiles/tfamily00007.h5 tools/h5repack/testfiles/tfamily00009.h5 tools/h5jam/testfiles/h5jam-ub-nohdf5.txt.err-sav tools/h5jam/testfiles/h5jam-help.txt.err-sav tools/h5jam/testfiles/h5unjam-help.txt.err-sav tools/h5jam/testfiles/h5jam-ub-nohdf5.txt.out-sav tools/h5jam/testfiles/h5jam-help.txt.out-sav tools/h5jam/testfiles/h5unjam-help.txt.out-sav hl/fortran/test/dsetf5.h5 c++/test/tattr_multi.h5 c++/test/tattr_scalar.h5 c++/test/tfattrs.h5 c++/test/tattr_basic.h5 c++/test/tattr_compound.h5 c++/test/tattr_dtype.h5 Tested on jam and emu in place and using srcdir with the svn stat command. This fix doesn't address two problems: tool/h5dump/testfiles directory is not removed by "make distclean" and it should be tools/misc/testfiles directory is removed by "make distclean" and it shouldn't be
* [svn-r24392] Cleanup testfiles from scripts. Update lists of files to be ↵Allen Byrne2013-11-0129-18/+335
| | | | | | cleaned. CMake update to clean testfiles. Tested: local cmake, autools, and h5committest
* [svn-r24390] Fixed a redefinition of HDfree in the HL library.Dana Robinson2013-11-011-2/+0
| | | | | | | Tested on: 32-bit LE linux (jam) There are no behavior changes, so testing was minimal.
* [svn-r24385] Add missing H5_ prefixAllen Byrne2013-10-311-3/+3
| | | | Tested: local linux
* [svn-r24380] The parallel test code now uses HDfree, HDmalloc, and HDcallocDana Robinson2013-10-315-89/+89
| | | | | | | | | | | exclusively. Part of the preparation for a fix for HDFFV-8551. Tested on: 32-bit LE linux (jam) w/ parallel and Fortran. There are no behavior changes, so testing was minimal.
* [svn-r24378] Fixed some commenting typos in configure.ac and reconfigured.Dana Robinson2013-10-312-4/+4
| | | | | | | Tested on: 32-bit LE linux (jam) There are no code changes. A build/test was done just to confirm.
* [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.Dana Robinson2013-10-3142-498/+479
| | | | | | | | | | | | | Prep work for adding a memory free function, part of HDFFV-8551. Tested on: 32-bit LE linux (jam) * with C++, Fortran * with thread safety on These are minor changes (almost entirely renaming foo functions to HDfoo) that don't change functionality. This should not require a full commit test.
* [svn-r24368] Issue 8147 - clang's -fcatch-undefined-behavior exposed ↵Raymond Lu2013-10-281-4/+43
| | | | | | | undefined behavior in the alignment detection algorithm for integers in H5detect.c. Quincey decided to solve it in two steps. First, catch illegal instruction signal in the original algorithm. Second, use POSIX __alignof function to detect alignment if it's available. This checkin is the first step. Tested on wren, jam, ostrich, platypas, and koala.
* [svn-r24362] Snapshot version 1.9 release 168HDF Tester2013-10-2713-26/+26
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* [svn-r24360] Jira issue 8528: H5Fget_obj_ids overfilled the list of object ↵Raymond Lu2013-10-252-59/+107
| | | | | | | | | IDs by one. This is the second round of checkin after receiving review comments from people. I put the safeguard in both H5F_get_objects and H5F_get_objects_cb to prevent overfill the list. tested with h5committest.
* [svn-r24358] Changed the big test so that it runs using the h5_fileaccess() ↵Dana Robinson2013-10-251-149/+171
| | | | | | | | | | | | fapl. The previous behavior was to execute a sec2, stdio, and family test everytime it ran, which was very inefficient under check-vfd. Tested on: 32- and 64-bit LE linux (jam and koala) 64-bit BE linux (ostrich) 64-bit OS-X 10.6 (fred)
* [svn-r24334] Snapshot version 1.9 release 167HDF Tester2013-10-2013-26/+26
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* [svn-r24333] Added a few volatile keywords to H5detect.c to quiet Visual ↵Dana Robinson2013-10-192-3/+3
| | | | | | | | Studio warnings. Also added a void to a Windows-specific function. These are both trivial changes that don't affect behavior. Tested on: Visual Studio 2010 on 64-bit Windows 7
* [svn-r24317] Fixed a typo.Raymond Lu2013-10-171-1/+1
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* [svn-r24307] Issue 8147: CLANG compiler with the options ↵Raymond Lu2013-10-161-0/+7
| | | | | | | | | -fcatch-undefined-behavior and -ftrapv catches some defined behavior in the alignment algorithm of the macro DETECT_I in H5detect.c. I documented it as a known problem. No test is needed.
* [svn-r24291] Description:Binh-Minh Ribler2013-10-1534-214/+237
| | | | | | | | | - Added a lot of documentation to classes for Reference Manual. - Fixed some format inconsistencies Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) Linux/64 2.6 (koala)/PGI compilers
* [svn-r24289] Correct linux shared version numberingAllen Byrne2013-10-141-1/+2
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* [svn-r24287] Snapshot version 1.9 release 166HDF Tester2013-10-1313-26/+26
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* [svn-r24285] Eliminate several "passing argument ... with different width ↵Larry Knox2013-10-108-22/+22
| | | | | | due to prototype" warnings by casting constants to size_t where expected by string functions. Tested on jam, koala,ostrich and platypus with h5committest.
* [svn-r24273] Update URLAllen Byrne2013-10-092-2/+2
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* [svn-r24270] checkin coverity changes from 10/4/2013.Mohamad Chaarawi2013-10-094-5/+12
| | | | tested with h5committest
* [svn-r24261] Description:Quincey Koziol2013-10-074-10/+11
| | | | | | | | | | | | | | | | | | | Correct H5I use of skip list to acquire the 'next' pointer in the skip list after the ID's 'free' callback has been called, since it occasionally deletes the 'next' node. Also a little bit of code cleanup in other modules. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.11 (emu) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode
* [svn-r24256] Description:Quincey Koziol2013-10-0410-54/+56
| | | | | | | | Clean up warnings Tested on: Mac OSX/64 10.8.4 (amazon) w/C++ & FORTRAN (too minor for h5committest)
* [svn-r24255] Description:Quincey Koziol2013-10-0414-415/+402
| | | | | | | | Switch H5I internal data structure from using hash table to skip lists. Tested on: Mac OSX 10.8.4 (amazon) w/C++ & FORTRAN FreeBSD, Linux, etc. forthcoming
* [svn-r24253] Add var for install fileAllen Byrne2013-10-021-3/+4
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* [svn-r24252] add log varsAllen Byrne2013-10-021-2/+14
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* [svn-r24251] Add packaging to processAllen Byrne2013-10-021-0/+13
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* [svn-r24250] Updated version numbers and notes about CTest ScriptingAllen Byrne2013-10-022-35/+53
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* [svn-r24240] Update WDTP test machinesAllen Byrne2013-10-011-8/+8
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* [svn-r24238] Update list of generated files for clear-objectsAllen Byrne2013-10-011-6/+8
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* [svn-r24235] Description:Binh-Minh Ribler2013-10-0111-15/+22
| | | | | | | | | | | | | - Appended h5tutr_ to names of data files to avoid name clashing with existing examples. - Added example dependencies to Makefile.* (pointed out by Allen) Platforms tested: SunOS 5.11 (emu) with gmake Linux/ppc64 (ostrich) Linux/32 2.6 (jam) Linux/64 2.6 (koala)/PGI compilers
* [svn-r24234] Bug: tfile.c was failing in the ADA AIX system.Albert Cheng2013-09-301-1/+1
| | | | | | | | | The reason was typo in the index variable in the newly added test_get_obj_ids(). Solution: fixed the typo. Tested: AIX machine. (Did not run h5committest because the fix is in a remote machine and the fix is quite obvious.)
* [svn-r24227] Add new examples to cmake listsAllen Byrne2013-09-302-0/+50
| | | | Tested: local linux
* [svn-r24224] HDFFV-8529: Space separate define stringsAllen Byrne2013-09-304-9/+9
| | | | Tested: h5committest
* [svn-r24221] Bug ID: HDFFV-8512Albert Cheng2013-09-301-8/+5
| | | | | | | | | Mailing lists instructions are incorrect. Fix by removing hdf5dev which has long retired (2009). Subscription requests should be sent to new address due to server change. Tested: tried to subscribe myself and it worked.
* [svn-r24218] Snapshot version 1.9 release 165HDF Tester2013-09-2913-26/+26
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* [svn-r24214] Put in proper error message if unexpected switch values happened.Albert Cheng2013-09-281-1/+2
| | | | Tested: h5committest.
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