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* [svn-r18823] Snapshot version 1.9 release 69HDF Tester2010-05-1614-28/+28
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* [svn-r18819] Maintenance: fixed typo in a comment line and formatting.Elena Pourmal2010-05-151-5/+5
| | | | Platforms tested: jam (minor fix)
* [svn-r18818] Bug fix: Elena Pourmal2010-05-155-114/+251
| | | | | | | | | | | Fixed a bug in the H5DSdetach_scale function when 0 bytes were allocated after the last reference to a dim. scale was removed from the list of references in a VL element of the DIMENSION_LIST attribute; modified the function to comply with the Spec: DIMENSION_LIST attribute is deleted now when no dimension scales left attached. Platforms tested: jam with electric fence, amani amd linew
* [svn-r18816] Move progname and d_status functions from h5tools to h5tools_utilAllen Byrne2010-05-144-34/+34
| | | | | Tested: linux and windows
* [svn-r18813] Purpose:Jonathan Kim2010-05-141-0/+8
| | | | | | | | | | | | | | | Add bug fixes for Tools. Description: Added list: 1726 - NPOESS: h5repack loses attributes for datasets of type H5T_REFERENCE 1814 - NPOESS: h5repack doesn't handle references to the groups as an element of a dataset 1817 - h5copy fail to copy dangling link by specifying link path directly 1793 - h5ls on a non-existent file gives 0 return code Tested: no, just text update.
* [svn-r18811] Removed references to packedbits filesAllen Byrne2010-05-141-3/+0
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* [svn-r18808] Purpose:Mike McGreevy2010-05-143-3/+3
| | | | | | | | | | | | | | | | | | | Fixed file cleanup during make distclean / make check. Description: The h5jam Makefile and the h5importtestutil.sh script both included cleanup steps that removed "*.txt" from the directory. This resulted in the new CMake specific configuration file, CMakeLists.txt, getting blown away by make distclean (for h5jam) and make check (for h5import). I've removed the *.txt from the h5jam Makefile as the directory looks to be getting cleaned appropriately without it, and I've modified the h5import script h5importtestutil.sh to point to the specific .txt files to clean. Tested: jam
* [svn-r18804] Purpose:Mike McGreevy2010-05-145-0/+67
| | | | | | | | | | | | | Fix memory leaks Description Added a routine to free memory which addresses a memory leak when variable length strings are used as fill values. Tested: h5committest and valgrind (on jam/amani) to confirm freed memory.
* [svn-r18803] Description:Binh-Minh Ribler2010-05-141-4/+16
| | | | | | | | | Added notes about + PropList::PropList(id) pclass id/plist id + new DataSet::getInMemDataSize + CommonFG::getLinkval and CommonFG::getComment take default values + bugzilla 1061 + read/write methods of DataSet and Attribute
* [svn-r18799] Description:Quincey Koziol2010-05-131-0/+3
| | | | | | | Added note about use of volatile for variables. Tested on: None - trivial change to comment.
* [svn-r18793] Add files to support building library with CMakeAllen Byrne2010-05-1361-57/+9190
| | | | Tested: Local linux
* [svn-r18791] Description:Quincey Koziol2010-05-131-4/+3
| | | | | | | | | | | | | | | | | | | | | Correct error in H5C_resize_entry() where protected entry sizes were not updated if the entry being resized was both pinned and protected. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18788] Added h5tools.h include to h5diff_common.h to fix warnings ↵Allen Byrne2010-05-131-2/+16
| | | | | | about the new progname and status functions Tested: local linux
* [svn-r18785] Description:Quincey Koziol2010-05-131-1/+1
| | | | | | | Fix unterminated comment. Tested on: None - just eyeballed.
* [svn-r18768] Description:Quincey Koziol2010-05-111-2/+2
| | | | | | | | | | | | | | | | | Correct a mis-merged patch when marking an entry dirty. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18765] Corrected typo in Fortran CStub DLL sectionAllen Byrne2010-05-111-1/+1
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* [svn-r18761] File needed to correctly set new H5TOOLS_* export/import attributeAllen Byrne2010-05-111-0/+281
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* [svn-r18759] pull r18757 from 1.8 branchAllen Byrne2010-05-1135-481/+572
| | | | | | | | | Enable tools lib to be built as a dll on windows. Added two get/set functions for progname and d_status. Also add windows import/export declarations to functions. Updated error_mesg() and warn_mesg() to remove progname argument and use get functions Tested: Windows, linux
* [svn-r18747] Purpose: Fixed bug 1599Binh-Minh Ribler2010-05-091-9/+9
| | | | | | | | | Description: Fixed operator= to use setId() properly. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r18745] Purpose: Fixed bug 1852Binh-Minh Ribler2010-05-091-19/+25
| | | | | | | | | | Description: When a property class id is given to PropList(id), create new prop list, but when a property list id is given, make a copy of it. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r18740] Description:Quincey Koziol2010-05-0712-189/+110
| | | | | | | | | | | | | | | | | | | | | | | Bring r18738 from metadata journaling 'merging' branch to trunk: Switch H5AC_resize_pinned_entry() to work on protected entries as well, and rename to H5AC_resize_entry() Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18727] Purpose: Fixed bug 1719Binh-Minh Ribler2010-05-061-3/+14
| | | | | | | | | Description: Closed a temporarily opened datatype to clean up memory leak, in getTypeClass. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r18725] Description:Quincey Koziol2010-05-0620-443/+390
| | | | | | | | | | | | | | | | | | | | | | Bring r18724 from metadata journaling 'merging' branch to trunk: Rename H5[A]C_rename to H5[A]C_move_entry. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18721] Description:Quincey Koziol2010-05-0621-517/+93
| | | | | | | | | | | | | | | | | | | | | | | | | Bring r18720 from metadata journaling merging branch to trunk: Bring changes from metadata journaling branch to 'merging' branch: Rename H5[A]C_mark_pinned_or_protected_entry_dirty() to H5[A]C_mark_entry_dirty() and get rid of H5[A]C_mark_pinned_entry_dirty(). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18716] Description:Quincey Koziol2010-05-0522-102/+147
| | | | | | | | | | | | | | | | | | | | | | Bring r18715 from metadata journaling merging branch to trunk: Changes to further align trunk with state of metadata journaling branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18709] Purpose:Mike McGreevy2010-05-0548-155/+529
| | | | | | | | | | | | | | | | | | | | | | | | | Improve configure's large-file support control. Description: Modified configure to now attempt to add defines necessary for supporting largefiles on all systems, instead of solely on linux. This is in response to user requests to enable largefile support on Solaris by default, as well as to give extra control on AIX (instead of just jamming the necessary flag into the config files). The old --enable-linux-lfs flag has been removed in favor of the --enable-largefile flag (enabled by default), which can be used on all platforms. On systems where large files cannot be supported in this manner, configure will report as such. Tested: h5committest AIX (NCSA's blue_print machine) duty, liberty, and linew.
* [svn-r18702] Description:Quincey Koziol2010-05-0580-1028/+1281
| | | | | | | | | | | | | | | | | | | | | | | Bring r18672 from metadata journaling "merging" branch to trunk: Mostly changes to move to only using one 'user data' parameter for calls to H5AC_protect(), along with some minor reformatting code cleanups. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18692] Description:Binh-Minh Ribler2010-05-031-4/+5
| | | | | | | Using header file H5private.h for HDstrcpy in H5CommonFG.cpp. Platforms tested: Linux/32 2.6 (jam) FreeBSD/32 6.3 (duty)
* [svn-r18690] Description:Binh-Minh Ribler2010-05-031-0/+3
| | | | | | Added #ifndef H5_NO_DEPRECATED_SYMBOLS to getObjTypeByIdx tests. Platforms tested: amani - with --disable-deprecated-symbols
* [svn-r18687] Description:Binh-Minh Ribler2010-05-031-0/+4
| | | | | | Added notes about new functions: CommonFG::getObjTypeByIdx CommonFG::getObjnameByIdx
* [svn-r18685] Description:Binh-Minh Ribler2010-05-025-1/+90
| | | | | | | | | Added missing overloaded function getObjTypeByIdx to return type name as a char*. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r18684] Snapshot version 1.9 release 68HDF Tester2010-05-0214-29/+29
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* [svn-r18682] Description:Binh-Minh Ribler2010-05-023-6/+42
| | | | | | | | | Purpose: Fix bugzilla 1857 Added missing overloaded function getObjnameByIdx to take char* for name. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r18677] Just mopped up some looseends by using the macro HDxyz instead ↵Albert Cheng2010-04-291-7/+7
| | | | | | | | the xyz function names. Tested: Jam only since this is trivial.
* [svn-r18675] Updated scripts for H5copy r18398 and H5ls r18642Allen Byrne2010-04-292-2/+54
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* [svn-r18666] Description:Quincey Koziol2010-04-291-7/+7
| | | | | | | Switch H5Rget_obj_type to H5Rget_obj_type2. Tested on: Linux/64 2.4 (amani) w/PGI compiler
* [svn-r18664] Description:Quincey Koziol2010-04-291-4/+10
| | | | | | | | | | | | | | | | | | | | | | | Add a few H5Tequal() calls to make certain that the native datatype constructed with H5Tget_native_type() is identical to the memory datatype created from the struct in memory. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18660] Description:Quincey Koziol2010-04-282-122/+105
| | | | | | | | | Tweak H5detect to be even more careful about its actions, to allow gcc 4.5 to use '-O3'. Also, minor code cleanups in H5Tfloat.c Tested on: FreeBSD/64 6.3 (liberty) w/gcc 4.5 & production mode (h5committest not necessary/appropriate)
* [svn-r18659] Bug: 1764Albert Cheng2010-04-284-70/+222
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: longjmp do not necessary restore signal that is blocked during the signal handling. This caused the Alignment test to fail quietly, resulting in wrong alignment information which will cause failures later. Solution: One can use sigsetjmp/siglongjmp to restore signal handling but not all systems such as Cray XT or VMS supports sigsetjmp. Backup solution is to use sigprocmask to reset the signal. Again, some systems may not support it either. Added code to try the first and then the second solution. Also added tests to verify if the signal_handler routines are working properly. Finally, added code to print results of the verification (in form of comments) to H5Tinit.c for inspection in case of failure. (Note that many platforms do not have alignment limits at all and ALIGNMNET code never raise the SIGBUS or SIGSEGV errors. In those cases, it does not matter whether the signal handlers work or not. Again, this can be deduced from the results comments near the end of the H5Tinit.c. If the sum of signal handlers called equals the total of verify, it means ALIGNMENT does not raise any signals.) For configure.in and configure: Added the test for setjmp, sigsetjmp, sigprocmask which are used by the H5detec.c. Tested: htcommittested, jam(serial).
* [svn-r18657] I added some comments. No test is needed.Raymond Lu2010-04-281-2/+18
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* [svn-r18654] Bug 1741:Allen Byrne2010-04-281-0/+173
| | | | | | | Added test of H5R package API parameters to testhdf5 test, these test only the public API parameter checks. Tested: local linux
* [svn-r18650] Description:Quincey Koziol2010-04-2739-67/+110
| | | | | | | | | | | | | | | | | | | Bring back various minor tweaks & cleanups from the revise_chunks branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18648] In H5T_get_native_type of H5Tnative.c, I changed the way that ↵Raymond Lu2010-04-276-32/+65
| | | | | | | | | the offset, alignment, and size of nested compound type are calculated by using H5T_cmp_offset. The old way had a bug in it (see bug #1850). Tested on jam. I tested the same change for 1.8 on amani, linew, and jam.
* [svn-r18647] I updated the default version of autoconf to 2.65 as this is ↵Raymond Lu2010-04-271-1/+1
| | | | | | the default on jam. Tested on jam.
* [svn-r18644] Add testing of H5Lcopy() and H5Lmove() between files for soft ↵Neil Fortner2010-04-271-2/+30
| | | | | | | | and external links. Tested: Fedora (too minor for commit test)
* [svn-r18642] Purpose:Jonathan Kim2010-04-272-2/+7
| | | | | | | | | | Fix for Bug 1793 - h5ls on a non-existent file gives 0 return code Description: After the fix, h5ls returns 1 (EXIT_FAILURE) if non-existent file is given. Tested: jam, amani, linew
* [svn-r18640] Description:Binh-Minh Ribler2010-04-272-10/+16
| | | | | | | | Added a null character to terminate a fixed-length string returned by H5Aread. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty)
* [svn-r18637] Description:Quincey Koziol2010-04-271-7/+10
| | | | | | | | Bring PGI compiler flags from 1.8 branch, reducing optimization level with PGI C 9.x Tested on: Linux/64 2.4 (amani) w/PGI C 9.x & 10.x
* [svn-r18634] Description:Quincey Koziol2010-04-2713-44/+400
| | | | | | | | | | | | | | | | | | | | | Clean up compiler warnings. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18632] Description:Quincey Koziol2010-04-271-0/+3
| | | | | | | Clean up memory leak in test code. Tested on: Linux/64 2.4 (amani) w/debug & valgrind
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