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* [svn-r11323] Purpose:Albert Cheng2005-08-3138-53/+87
| | | | | | | | | | | | | | | | tidy up. Description: MPE option created *.clog file whenever it is executed in MPI. The cleanup of *.clog files were done in individual Makefile.in. Often, it is forgotten. Solution: Moved the cleaning of *.clog files to CHECK_CLEANFILES in commence.am so that it is applied whenever check-clean is called. Platforms tested: heping pp using MPE.
* [svn-r11322] MuQun Yang2005-08-311-0/+5
| | | | | | | | | | | | | | | Purpose: Add the known problem for IRIX6.5 C version >7.4. Description: Somehow SGI's MPI implementation doesn't free MPI_TYPE_entries, So for large application to use MPI derived datatype, environment variable MPI_TYPE_MAX needs to be reset. Solution: Platforms tested: Misc. update:
* [svn-r11321] MuQun Yang2005-08-311-8/+18
| | | | | | | | | | | | | Purpose: Add some comments and error checking codes for collective chunk IO code. Description: Solution: Platforms tested: AIX 5.1(copper), too minor to test at other platforms. Misc. update:
* [svn-r11320] Purpose: TestRaymond Lu2005-08-312-2/+2
| | | | | | | | | Description: made --disable-dconv-accuracy default to let daily test check every systems. Will change it back to --enable-dconv-accuracy afterwards. Platforms tested: h5committest
* [svn-r11319] Purpose:James Laird2005-08-3045-59/+77
| | | | | | | | | | | | | | | | | | | | | | | Bug fixes Description: This checkin fixes an occasional error on kelgia on sol during distclean. It also causes test scripts to depend properly on the programs they're supposed to be testing. Solution: The kelgia bug was due to some files being cleaned by automake and manually. Removed the manual cleaning in src/Makefile.am. Test script dependencies now need to be specified manually, since the makefile can't guess what they test from their name. Currently all test scripts in a given directory have a single list of dependencies--this was easy and seems to be sufficient. These dependencies are listed in the SCRIPT_DEPEND variable in the Makefile.am. Platforms tested: heping, mir, modi4, sol Misc. update:
* [svn-r11318] Purpose: TestRaymond Lu2005-08-302-2/+2
| | | | | | | | | Description: made --disable-dconv-exception default for configuration to let daily test run on every system. The default was --enable-dconv-exception. Platforms tested: h5committest and fuss.
* [svn-r11317] Purpose: Minor change to macro namesRaymond Lu2005-08-303-132/+132
| | | | | | | | | | | | Description: Changed the names of the interim macros for data conversion checked in yesterday from the SOURCE_DESTINATION style (like FP_FP or LDOUBLE_LLONG) to the H5T_CONV_INTERIM_SOURCE_DESTINATION style (like H5T_CONV_INTERIM_FP_FP OR H5T_CONV_INTERIM_LDOUBLE_LLONG), to be more descriptive. These macros are defined in H5Tpkg.h and used in H5Tconv.c and H5T.c for interim purpose. Platforms tested: fuss - simple change.
* [svn-r11316] MuQun Yang2005-08-301-2/+2
| | | | | | | | | | | | | | Purpose: bug fix for collective chunk IO Description: When using calloc to allocate an MPI datatype, one should use sizeof(MPI datatype) instead of sizeof(equalivent non-MPI datatype) to assign the value, this causes the problem at 64-bit platforms such IRIX65 and AIX 5.1. Solution: Correct it. Platforms tested: AIX 5.1 and IRIX6.5(at NCAR). Misc. update:
* [svn-r11315] Purpose: Minor change on feature.Raymond Lu2005-08-302-43/+44
| | | | | | | | | Description: Changed the configuration options --enable-exception and --enable-accuracy checked in yesterday to --enable-dconv-exception and --enable-dconv-accuracy to be more descriptive. Platforms tested: fuss - simple change.
* [svn-r11314] Purpose:Albert Cheng2005-08-301-15/+26
| | | | | | | | | | | | | | | | | | Bug #281 Description: A dataset created in serial mode with H5D_ALLOC_TIME_INCR allocation setting was not extendible, either explicitly by H5Dextend or implicitly by writing to unallocated chunks. This was because parallel mode expects the allocation mode be H5D_ALLOC_TIME_INCR only. Solution: Modified library to allocate more space when needed or directed if the file is opened by parallel mode, independent of what the dataset allocation mode is. Platforms tested: Heping pp.
* [svn-r11313] Purpose:Albert Cheng2005-08-302-0/+7
| | | | updated.
* [svn-r11312] Purpose:Albert Cheng2005-08-305-3/+202
| | | | | | | | | | | | | | | | | | Bug #281 Description: A dataset created in serial mode with H5D_ALLOC_TIME_INCR allocation setting was not extendible, either explicitly by H5Dextend or implicitly by writing to unallocated chunks. This was because parallel mode expects the allocation mode be H5D_ALLOC_TIME_INCR only. Solution: Modified library to allocate more space when needed or directed if the file is opened by parallel mode, independent of what the dataset allocation mode is. Platforms tested: Heping pp.
* [svn-r11311] Purpose: New features.Raymond Lu2005-08-299-544/+839
| | | | | | | | | | | | | | | | | | | | Description: Added 2 new configure options, --enable-exception and --enable-accuracy. --enable-exception lets the library check whether user's exception handling functions are present during compiler data conversions and use them if they are. When it's disabled, this step is skipped to improve conversion speed. This step isn't implemented yet for soft conversions because there would be little gain in speed. --enable-accuracy guarantees data accuracy during data conversions. It means the library will choose compiler conversions only if the accurate data is secured. Otherwise, the library will go for the library's own conversions. If this option is disabled, the library uses compiler conversions in favor of their speed as long as they work even if data can be incorrect. Platforms tested: h5committest and fuss. Some systems may fail after this checkin.
* [svn-r11309] Purpose:Albert Cheng2005-08-291-3/+3
| | | | | | | | | | | Bug fix. Description: Error encountered in the clean command was not passed back to calling command. Fixed it. Platforms tested: heping (where clean has no error) and sol (where clean has error).
* [svn-r11307] Purpose:Quincey Koziol2005-08-299-105/+105
| | | | | | | | | | | | Code cleanup Description: Clean up internals of group creation & iteration code. Platforms tested: FreeBSD 4.11 (sleipnir) Mac OS X (nile) Too minor to require h5committest
* [svn-r11304] Purpose:Quincey Koziol2005-08-2719-123/+133
| | | | | | | | | | | | | Code cleanup (sorta) Description: Adjust H5G_stat_t to prepare for eventual "external link" information. This also puts the information for regular objects and soft links into more obviously separate places. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4
* [svn-r11303] Purpose:Albert Cheng2005-08-2637-879/+540
| | | | | | | | | | | | minor tidy up. Description: Changed both test programs and test scripts to use the same suffixes (.chkexe and .chklog). Changed from .log to .chklog to avoid running into potential conflicts by other "things" (e.g., config.log). Tested: Heping.
* [svn-r11300] Purpose:Quincey Koziol2005-08-253-2/+154
| | | | | | | | | | | | Code cleanup Description: Prevent memory leak when too many links are traversed. Also add test to traverse too many links. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4
* [svn-r11299] Purpose:Fang Guo2005-08-251-0/+5
| | | | | | | | | | | | Improvement for Windows Description: thread number can not be printed out on windows. Add a special macro for WIN32 to print out some helpful messages Solution: Platforms tested: Heping and MSVS 6.0 on Windows XP Misc. update:
* [svn-r11297] Purpose:Quincey Koziol2005-08-259-779/+741
| | | | | | | | | | | | Code cleanup & speedup Description: Refactor h5dump & related code to be considerably cleaner & faster for files with large #'s of objects. Platforms tested: FreeBS 4.11 (sleipnir) Linux 2.4
* [svn-r11295] Purpose:Quincey Koziol2005-08-252-7/+110
| | | | | | | | | | | | Bug fix Description: Fix "strong" file closing to handle a dangling dataset which uses a dangling named datatype. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor too require h5committest
* [svn-r11294] Purpose:MuQun Yang2005-08-251-52/+3
| | | | | | | | | | | | | | | bug fix Description: The previous version always tests with mpi-IO driver even when mpi-posix driver is set. Solution: Add the option to test mpi-posix driver for the first round collective chunk IO test. Platforms tested: IRIX64, AIX 5.1, Linux 2.4 Misc. update:
* [svn-r11293] Purpose:Albert Cheng2005-08-231-0/+3
| | | | updated with the change of t_mpi.
* [svn-r11292] Purpose:Albert Cheng2005-08-231-3/+13
| | | | | | | | | | | | | | | | | | | | | | | | | | "bug fix" Description: The test_mpio_derived_dtype() often hangs when fails. So it was not run by default to avoid hanging the daily tests or confusing users. But then new system or new codes in collective chunk fails while one can't tell for sure if it is because of the complicated derived type failures or something else. Solution: Changed the logic so it is skipped only if it is known that the complicated MPI derived type does not work. (This is indicated by macro H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS NOT defined. Platforms tested: heping pp (where it is tested by default). Modi4 pp (where it is SKIPPED by default.) I also forced modi4 to test it and modi4 said it actually is working and should change the setting of H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS to working?!! Misc. update:
* [svn-r11291] Purpose:Albert Cheng2005-08-231-33/+32
| | | | | | | | | | | | | | | | | | Code cleaning. Description: The block of code that is conditioned by the H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS and manipulates the return code of test_mpio_derived_dtype, does not really belong in main. If return code of test_mpio_derived_dtype needs to be adjusted, it should be done in test_mpio_derived_dtype. Solution: Moved that block of code test_mpio_derived_dtype. Platforms tested: heping PP. Misc. update:
* [svn-r11290] Purpose:Fang Guo2005-08-231-9/+197
| | | | | | | | | | | | Maintenance on Windows Description: Add how to build hdf5 with thread-safe feature on windows into the document Solution: Platforms tested: Misc. update:
* [svn-r11289] Purpose:Albert Cheng2005-08-221-0/+3
| | | | | | | | | | | | | | cleanup Description: Changed the conditional definitions of HDvsnrintf and HDsnprint be dependent on TFLOPS being defined so that these are consistent with the condition in H5.c in which the two functions are coded. Platforms tested: heping. Misc. update:
* [svn-r11288] Purpose:Fang Guo2005-08-221-9/+8
| | | | | | | | | | | | Maintenance on Windows Description: Move Win32 Macros(snprintf and vsnprintf) to the right places Solution: Platforms tested: MSVS 6.0 on Windows XP heping Misc. update:
* [svn-r11287] Purpose:Fang Guo2005-08-221-3/+4
| | | | | | | | | | | | Maintenance on Windows Description: Fix typoes H5_HAVE__SNPRINTF should be H5_HAVE_SNPRINTF Solution: Platforms tested: Misc. update:
* [svn-r11286] Purpose:Albert Cheng2005-08-221-4/+4
| | | | | | | | | | | | | | | bug fix Description: The set of h5diffdebugN macros that printed nothing did not have the proper number of parameters. Some compilers (gcc) did not like it. Solution: Fixed them to have the matching number of parameters. Platforms tested: heping pp (using both mpich-icc and mpich-gcc), modi4 pp.
* [svn-r11283] Purpose:Quincey Koziol2005-08-208-216/+252
| | | | | | | | | | | | | | | | Code cleanup Description: Clean up code somewhat: - Move from HDmemset() -> H5G_ent_reset() to clear out group entry info - Simplify H5G_unlink() call - Use portability macros instead of direct system calls in more places - Improve readbility by neatening whitespace, etc. - Move some macros into source code module instead of header files Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4
* [svn-r11282] Purpose:Quincey Koziol2005-08-209-90/+458
| | | | | | | | | | | | | | | | | New debugging feature Description: Add some code to track where memory from the internal free list allocator is allocated within the library. It's not quite ready for "prime time" yet, but it's close enough to be useful. This is disabled by default and requires the H5FL_TRACK macro in src/H5FLprivate.h to be uncommented to activate during debugging. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4 Too minor to require full h5committest
* [svn-r11280] Purpose:Quincey Koziol2005-08-202-3/+2
| | | | | | | | | | | Code cleanup Description: Clean up unused variables & use portability macros better Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11277] Purpose:Quincey Koziol2005-08-208-219/+236
| | | | | | | | | | | | | | | Bug fix Description: Fix core dump when checking whether to invalidate the name of an object when unlinking an object in a group opened through an object reference. Solution: Check if names of various objects are valid before comparing them, etc. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11276] Purpose:Quincey Koziol2005-08-204-72/+79
| | | | | | | | | | | | | | Code cleanup/bug fix Description: Add missing files to manifest Remove C++ style single-line comment from recent checkin and also re-indent in a few places. Platforms tested: FreeBSD 4.11 (sleipnir) w/thread-safe Not configured w/h5committest
* [svn-r11275] Purpose:Albert Cheng2005-08-201-2/+8
| | | | | | | | | | | | cleanup Description: Disable the debug printout. Platforms tested: heping pp. Misc. update:
* [svn-r11274] Purpose: Additional code improvementBinh-Minh Ribler2005-08-196-0/+24
| | | | | | | | | Description: Forgot to modify the examples for the "using" declaration changes in the library. Added "using" declaration appropriately. Platforms tested: Linux 2.4 (heping) - very minor
* [svn-r11273] Purpose:Fang Guo2005-08-192-1803/+1835
| | | | | | | | | | | Maintenance Description: Update workspace and solution file Solution: Platforms tested: MSVS 6.0 on windows Misc. update:
* [svn-r11272] Purpose:Fang Guo2005-08-191-0/+239
| | | | | | | | | | | Improvement Description: Documentation for installing HDF5 on Cywin Solution: Platforms tested: Misc. update:
* [svn-r11271] Purpose:Fang Guo2005-08-191-0/+13
| | | | | | | | | | | Maintenance Description: Add some comments for future thread safe use on windows Solution: Platforms tested: Misc. update:
* [svn-r11270] Purpose:Fang Guo2005-08-191-0/+123
| | | | | | | | | | | Improvement on windows Description: Add Thread safe project file with pthread-win32 on Windows Solution: Platforms tested: MSVS 6.0 on Windows XP Misc. update:
* [svn-r11269] Purpose:Fang Guo2005-08-191-22/+62
| | | | | | | | | | | | | | Improvement Description: ttsafe cancel failed on Windows because pthread mutex and cond are not initialized Add some assertion statements to locate the errors when they happen Solution: Initialize pthread mutex and cond to the default attributes. Platforms tested: MSVS 6.0 on windows XP and heping(with pthread) Misc. update:
* [svn-r11268] Purpose:Fang Guo2005-08-191-15/+38
| | | | | | | | | | | Improvement Description: Add some assertion statements to locate the errors when they happen Solution: Platforms tested: MSVS 6.0 on windows and heping(with pthread) Misc. update:
* [svn-r11267] Purpose:Fang Guo2005-08-191-6/+14
| | | | | | | | | | | Improvement Description: Add some assertion statements to locate the error when errors happen Solution: Platforms tested: MSVS 6.0 on windows XP and heping(enable threadsafe with pthread) Misc. update:
* [svn-r11266] Purpose:MuQun Yang2005-08-191-1/+9
| | | | | | | | | | | | | Add more comments for collective chunk IO supports. Description: On some platforms that use mpich library internally, we have no way to check mpich version number. We have to manually turn off the collective IO supports. One example is Altix(cobalt). Just put a comment there so that we won't forget about this. Solution: Platforms tested: Misc. update:
* [svn-r11265] Purpose:Albert Cheng2005-08-193-1184/+2042
| | | | | | | | | | | | | New feature Description: All datasets were 1D only before. Added -g to use 2D datasets such that it allows more options in testing various access patterns. Platforms tested: heping pp. Misc. update:
* [svn-r11264] Purpose: Additional code improvementBinh-Minh Ribler2005-08-189-1/+30
| | | | | | | | | | Description: Used "using" declaration and directive better to reduce namespace pollution. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol)
* [svn-r11263] Purpose:Albert Cheng2005-08-181-145/+117
| | | | | | | | | Bug fix. Description: Fixed ph5diff Bugs that hanged the last test. Tested in heping and copper in pp mode.
* [svn-r11262] Purpose:Albert Cheng2005-08-181-1/+10
| | | | | | | | Bug fix. Description: Added filtering of h5diff debug output. Restored the skipped test to be tested again.
* [svn-r11261] Purpose:Albert Cheng2005-08-181-1/+8
| | | | | | | | | | | | Feature and bug patch Description: Added the SKIP feature which skips a test. The latest code will hang the very last test. Skip that test for now. Platforms tested: heping pp.
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