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* [svn-r16587] Description:Quincey Koziol2009-03-1711-463/+3232
| | | | | | | | | | | | | | | | | | | | Add infrastructure & tests for "flush dependencies" in metadata cache, which allow relationships that specify which order to flush metadata entries in. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16584] added the OUTPUT-ARCHITECTURE STD that was previously removed Pedro Vicente Nunes2009-03-161-0/+1
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* [svn-r16579] Snapshot version 1.9 release 35Larry Knox2009-03-159-23/+23
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* [svn-r16576] Description:Quincey Koziol2009-03-121-1/+1
| | | | Actually set the exit value for the test (*sigh*)
* [svn-r16574] Description:Quincey Koziol2009-03-121-228/+200
| | | | | | | | | | | | | | | | | | | | | | Clean up many compiler warnings and make test return non-zero exit code when a failure is detected. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16571] corrected the date on the release.txt entry and a comment on ↵Pedro Vicente Nunes2009-03-112-2/+2
| | | | the script
* [svn-r16570] modified the last entry to be on top , not lastPedro Vicente Nunes2009-03-111-2/+3
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* [svn-r16569] the conf file needs a byte order entry because of the way the ↵Pedro Vicente Nunes2009-03-111-0/+1
| | | | | | | | tool validates the output with h5dump (comparing the h5dump current output with a h5dump output from a pre-existent h5 file). added the byte order keyword that was removed on the last check in tested: linux, solaris
* [svn-r16568] #1462 By selecting a compression type, a big endian byte order ↵Pedro Vicente Nunes2009-03-114-5/+8
| | | | | | | | | | | | | | | | was being selected. When reading the compression parameter keyword, the compression type read flag was incorrectly set to read, removed this line of code in->configOptionVector[COMPRESS] = 1; Modified one configuration file to have the COMPRESSION-TYPE GZIP Keyword. Entered a bug description fix of - h5import: By selecting a compression type, a big endian byte order was being selected (PVN - 2009/11/3) tested: linux
* [svn-r16563] removed commnented code Pedro Vicente Nunes2009-03-101-13/+0
| | | | tested: linux
* [svn-r16561] Purpose:Mike McGreevy2009-03-1043-122/+125
| | | | | | | | | | | | | | | | | | Bug Fix Description: Fixing BZ #1381. The --includedir=DIR configure option, which is used to specify the installation location of C header files, did not work correctly as the path was hard-coded in config/commence.am. I'm presuming this is because an older version of automake didn't know where to put c header files. In any case, removing this line now defaults the includedir to the same directory that it is currently hard-coded to, and also fixes the configure flag to allow customization of this value. Tested: jam, liberty
* [svn-r16560] Description:Quincey Koziol2009-03-1072-1356/+1203
| | | | | | | | | | Remove another call to H5E_clear_stack() from within the library. Clean up lots of compiler warnings. Tested on: Mac OS X/32 10.5.6 (amazon) (followup on other platforms forthcoming)
* [svn-r16554] Purpose:Mike McGreevy2009-03-093-65/+4
| | | | | | | | | | | | | | | | Bug Fix Description: Removing the code from configure which strips the '-g' flag from CFLAGS when in production mode. The current default CFLAGS in production mode does not include '-g', as intended, but we should allow users to override this and enable '-g' by setting the CFLAGS environment variable if desired. Note that this applies to FCFLAGS and CXXFLAGS as well. Tested: kagiso, linew, liberty
* [svn-r16553] Snapshot version 1.9 release 34Larry Knox2009-03-089-24/+24
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* [svn-r16552] Correct typo.Larry Knox2009-03-061-1/+1
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* [svn-r16549] Bug #608: Memory leak in H5DSset_label. Added code to free sub ↵Allen Byrne2009-03-051-225/+258
| | | | | | | | | string ptr's belonging to buffer in H5DSset_label and H5DSget_label. Also added free of buffers in error section of both functions. Potential memory leaks may exist elsewhere, and this will not close the bug. Tested: h5committest vista 32 VS2008
* [svn-r16548] Updated MANIFEST for new files in vms/tools.Larry Knox2009-03-051-0/+2
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* [svn-r16545] Added text that long_long macro was removed. This should have ↵Allen Byrne2009-03-051-0/+3
| | | | been added with r16489.
* [svn-r16542] Add h5stat and misc to the tools directory.Raymond Lu2009-03-042-0/+93
| | | | Not tested yet.
* [svn-r16540] Move variable declaration to the top of the block in ↵Neil Fortner2009-03-041-1/+2
| | | | | | H5G_dense_iterate Tested: Fedora 10 (too minor for full committest)
* [svn-r16539] Added more test case for bypassing the cache. In ↵Raymond Lu2009-03-031-17/+49
| | | | | | | | | | | test_big_chunks_bypass_cache, test the correctness of the data when the fill value is defined or not. The library should let the chunks bypass the cache depending on the size of the chunks and whether to write fill value to the chunks. Tested on jam - simple change.
* [svn-r16532] Description:Quincey Koziol2009-03-023-9/+11
| | | | | | | | | | Pass the chunk "user data" to H5D_chunk_unlock(), so that chunks with an address already aren't reallocated. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r16525] Snapshot version 1.9 release 33HDF Tester2009-03-019-24/+24
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* [svn-r16523] Purpose: Fix bugs related to H5Dset_extent and fill valuesNeil Fortner2009-02-275-246/+362
| | | | | | | | | Description: In some situations it was possible for the fill value to not be written to parts of a chunked dataset, particularly when extending and/or shrinking. Prior to the fix for the chunk cache (1015) these bugs would have been exceedingly rare. Tested: jam, smirom, linew (h5committest)
* [svn-r16521] Changed windows batch file due r16518. As all windows OS are ↵Allen Byrne2009-02-261-2/+2
| | | | | | | always LE on all platforms, simply added le to the two locations where these files are used. Tested: Vista 32 VS2008
* [svn-r16518] have 2 expected outputs for 2 h5ls runs depending if run on a ↵Pedro Vicente Nunes2009-02-2649-38/+150
| | | | | | | big or little endian machine. Configure.in was modified to export a variable carrying endianess information to testh5ls.sh. This script then compares the current run with 2 expected outputs, one for a big-endian machine (linew was used to generate the output), other for little endian (jam was used to generate the output) the way h5ls prints types, it starts searching for NATIVE types first. One solution would be h5ls not to detect these native types, using for example the same print datatype function that h5dump does, that would make the output look the same on all platforms ("32-bit little-endian integer" would be printed instead). Drawback, this "native" information would not be available. Other solution is to have not one but 2 expected outputs and make the shell script detect the endianess and compare with one output or other tested: h5committest
* [svn-r16516] To improve the performance of querying the info of a link (bug ↵Raymond Lu2009-02-241-45/+66
| | | | | | | | | | | #1404). When the index was set to creation order in query function but there's no creation order indexed in the file, the library tried to build and sort a table of all links. To optimize it, let the library use the B-tree for names of the links. Tested on jam. I tested the same change for v1.8 with h5committest.
* [svn-r16511] bug fix: TESTING2 macro introduced recently for the test suite ↵Pedro Vicente Nunes2009-02-232-8/+8
| | | | | | (it adds an extra space at the beginning of output, for indentation) was already available for HL and caused compilation problems on AIX. Replaced the name with TESTING_2 tested: h5committest
* [svn-r16506] Snapshot version 1.9 release 32HDF Tester2009-02-2210-29/+30
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* [svn-r16504] Maintenance: Fixed a typo discovered while compiling on AIX systemElena Pourmal2009-02-201-1/+1
| | | | Platforms tested: Mac OSX and AIX (by Ed) (minor fix)
* [svn-r16502] bug fix: a comma accidently left on a conditional typedef was ↵Pedro Vicente Nunes2009-02-201-4/+13
| | | | | | causing compilition error on AIX tested: h5commitest
* [svn-r16501] remove a strange character from a commentPedro Vicente Nunes2009-02-201-2/+2
| | | | tested: h5committest
* [svn-r16499] Description:Quincey Koziol2009-02-191-1/+7
| | | | | | | | Cache chunk info for newly created chunk. Tested on: FreeBSD/32 6.3 (duty) (Tests included in upcoming revise_chunks branch changes)
* [svn-r16492] revert gcc PROD_CFLAGS to "-O", which was incorrectly changed ↵Allen Byrne2009-02-191-1/+1
| | | | by rev 16489.
* [svn-r16489] Fixed bug #1459 by eliminating the macro long_long and ↵Allen Byrne2009-02-1852-615/+560
| | | | | | | | | | | replacing all instances with long long. Tested: h5comittest fedora 10 x64 Vista 32, VS2005, IVF101 XP32, Cygwin
* [svn-r16488] Description:Quincey Koziol2009-02-173-169/+81
| | | | | | | | | Clean up code and eliminate resource leaks. Also avoid "null" I/O when chunk doesn't exist and we can skip it. Tested on: Mac OS X/32 10.5.6 (amazon) (too minor to require h5committest)
* [svn-r16484] Snapshot version 1.9 release 31HDF Tester2009-02-159-24/+24
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* [svn-r16483] Description:Quincey Koziol2009-02-1210-147/+183
| | | | | | | | | Clean up (i.e. remove) more internal calls to H5E_clear_stack(), along with some other minor code cleanups. Tested on: Mac OS X/32 10.5.6 (amazon) (too minor to require h5committest)
* [svn-r16480] Purpose: Improve chunk cacheNeil Fortner2009-02-126-16/+250
| | | | | | | | | | | Description: The meaning of the "nbytes" field in H5D_rdcc_t was not clear, and some places assumed it was the maximum size of the chunk cache, while some assumed it was the current size of the chunk cache. The end result was that only 1 chunk could be held in cache at a time. This field has been replaced by "nbytes_max" and "nbytes_used". Performance of cached I/O should improve greatly. Tested: jam, smirom (h5committest)
* [svn-r16479] Fixed date in RELEASE.txt for last commit.Neil Fortner2009-02-121-1/+1
| | | | Tested: kate
* [svn-r16477] Purpose: Fix problem with opening an attribute multiple times ↵Neil Fortner2009-02-128-21/+186
| | | | | | | | | | | | | | | through multiple file handles. Description: An attribute's "oloc" field which specifies the file it resides in was located in the attribute's "shared" structure. So when an attribute was opened multiple times all of the handles for that attribute pointed to the same file id, even if different file id's were used to open the different handles for the attribute. The "oloc" has been moved to the top level H5A_t struct. Tested: jam, smirom (h5committest)
* [svn-r16475] Purpose: Fix rare error when adding a new object header messageNeil Fortner2009-02-123-57/+212
| | | | | | | | | | | | Description: Since the new object header format, it has been possible for a situation to be created where none of the messages are large enough to hold a continuation message and there are no null messages to merge with. This makes it impossible to add a new object header chunk. This case will now be handled by moving every message in the last chunk to the newly allocated one, except for null messages which are deleted. Tested: jam, smirom (h5committest)
* [svn-r16473] Purpose: fix problems related to 'self-referential' attributesNeil Fortner2009-02-1237-154/+353
| | | | | | | | | | | | Description: When an attribute was created with a datatype or dataspace that was shared in the same object header that the attribute was in, the attribute could not be deleted. Changes made to ensure that the attribute can be deleted both when the attribute is in the object header and when it is shared in the heap. Object header message decode routines now take an "open_oh" parameter to enable them to avoid opening the same object header twice. Tested: jam, smirom (h5committest)
* [svn-r16472] Change H5Dopen to H5Dopen2 - fixes compile error - too many ↵Larry Knox2009-02-121-1/+1
| | | | arguments for H5Dopen1 when using v1.6 compatible flag. Trivial change, tested on smirom and jam.
* [svn-r16469] Added new cases for compound types to batch file per the ↵Allen Byrne2009-02-111-0/+7
| | | | | | | updated script file of rev #16461 Tested: Vista32, XP64 - VS2005, VS2008
* [svn-r16466] Performance Improvement(bug #1450). When a chunk is bigger ↵Raymond Lu2009-02-111-0/+135
| | | | | | | | | | than the cache size and isn't allocated on disk, the library still loaded it in the cache, which is redundant. I changed it to bypass the cache and added a test in dsets.c. Tested on jam and smirom.
* [svn-r16465] Performance Improvement(bug #1450). When a chunk is bigger ↵Raymond Lu2009-02-113-18/+174
| | | | | | | | | than the cache size and isn't allocated on disk, the library still loaded it in the cache, which is redundant. I changed it to bypass the cache and added a test in dsets.c. Tested on jam and smirom.
* [svn-r16464] I brought them up to date. I'm testing them on OpenVMS now.Raymond Lu2009-02-1119-131/+170
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* [svn-r16461] Bug fix: for compound types, the not comparable test for ↵Pedro Vicente Nunes2009-02-1111-9/+175
| | | | | | | | | | | | | | | | | | | | members was not done Solution: for compound types, recursively apply that check Two new cases are added 1) the compound type has a different number of members. Message printed is <obj1> has X members <obj2> has Y members Where X and Y are the number of members of each compound type being compared 2) the compound type has not comparable types (for example a double and an int at the same index) In this case the message Comparison not possible: object1 is of class1 and object2 is of class2 Is replaced with Comparison not possible: object1 has a class1 and object2 has a class2 Modified the test generator program to have these 2 cases Added a shell run for these 2 cases Tested: windows, h5committest
* [svn-r16457] Fix a typo in INSTALL_Windows.txt.Neil Fortner2009-02-101-1/+1
| | | | Tested: Notepad
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