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* [svn-r18445] Purpose: Fix bug 1637Neil Fortner2010-03-2410-133/+247
| | | | | | | | | | Description: Modified algorithm for extending a dataset with early allocation so it only deals with the new chunks. Formerly, it would loop over all chunks, checking to see if each existed in cache and on disk, causing major performance issues with large numbers of chunks. Tested: jam, linew, amani (h5committest)
* [svn-r18442] Purpose:Jonathan Kim2010-03-231-1/+2
| | | | | | | | | | | Resolve windows build issue from previous checkin r18425 Description: The previous checkin was for bug1814 - NPOESS: h5repack doesn't handle references to the groups as an element of a dataset Tested: jam
* [svn-r18438] Changed copy script to copy all *.h filesAllen Byrne2010-03-221-7/+1
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* [svn-r18432] Snapshot version 1.9 release 63HDF Tester2010-03-2114-29/+29
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* [svn-r18431] Added libsettings project to solution files.Allen Byrne2010-03-194-63/+92
| | | | Updated Manifest
* [svn-r18430] Add windows define BIND_TO_CURRENT_VCLIBS_VERSION=1 to project ↵Allen Byrne2010-03-19247-1833/+2232
| | | | | | | files. Corrected copy H5srcdir_str.h commands in script. Added libsettings project to behave like h5tinit.vcproj.
* [svn-r18425] Purpose:Jonathan Kim2010-03-186-6/+342
| | | | | | | | | | | | Fix for bug1814 - NPOESS: h5repack doesn't handle references to the groups as an element of a dataset Description: handles object reference to named-datatype as well. Add test cases. Tested: jam, amani, linew
* [svn-r18420] Description:Quincey Koziol2010-03-1814-159/+24
| | | | | | | | | Re-run bin/reconfigure to catch up with recent rearrangements, remove some unused srcdir headers and duplicated code in main test header. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & prod Linux/32 2.6 (jam)
* [svn-r18419] Description:Quincey Koziol2010-03-1831-61/+107
| | | | | | | | | Clean up srcdir querying code more, extracting it into single header file, to avoid compiler warnings. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & prod Linux/32 2.6 (jam)
* [svn-r18418] Description:Quincey Koziol2010-03-1812-496/+54
| | | | | | | | Centralize common code for srcdir lookups. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & prod Linux/32 2.6 (jam)
* [svn-r18417] Description:Quincey Koziol2010-03-181-0/+1
| | | | Add new file
* [svn-r18416] Description:Quincey Koziol2010-03-181-1/+0
| | | | | | | Fix error with srcdir header file included twice. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & production and C++
* [svn-r18415] Description:Quincey Koziol2010-03-187-109/+326
| | | | | | | | | | Move the libhdf5.settings information out of src/H5Tinit.c and into a separate header file (src/H5lib_settings.h), which is generated at build time (not configure time) with the src/H5make_libsettings generator program. Tested on: Linux/32 2.6 (jam) Mac OS X/32 10.6.2 (amazon)
* [svn-r18414] Description:Quincey Koziol2010-03-1711-0/+165
| | | | Add copyright to new files
* [svn-r18413] Description:Quincey Koziol2010-03-1750-320/+693
| | | | | | | | | | | | | | Unify srcdir handling for test executables and allow them to use the srcdir setting from configure time without requiring the 'srcdir' environment variable be set (although you still can, to override the built in setting). Attempted to get this right for Windows builds also. Also add dependency between src/H5Tinit.c and src/libhdf5.settings, so that the test/testcheck_version.sh script works correctly. Tested on: Linux/32 2.6 (jam) Mac OS X/32 10.6.2 (amazon)
* [svn-r18410] Fixed a typo in a message.Albert Cheng2010-03-171-1/+1
| | | | No test needed since it is in a message string.
* [svn-r18406] Snapshot version 1.9 release 62HDF Tester2010-03-1415-32/+32
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* [svn-r18404] Description:Frank Baker2010-03-121-1/+1
| | | | Update copyright date to 2010.
* [svn-r18399] Note: Jonathan Kim2010-03-094-0/+45
| | | | | | | | | | | missed to add extra files from previous check-in (r18398) Description: add test cases for h5copy - copy external links with/without ‘–f ext’ option (relate to bug 1733) Tested: jam, amani and linew
* [svn-r18398] Description:Jonathan Kim2010-03-092-1/+239
| | | | | | | | add test cases for h5copy - copy external links with/without ‘–f ext’ option (relate to bug 1733) Tested: jam, amani and linew
* [svn-r18395] Purpose: Fix links.c failureNeil Fortner2010-03-093-347/+413
| | | | | | | | | | | | | | | | Description: The core file driver previously matched files only based on the name used to open them, even when a backing store is used. This caused problems in the failing test when it traversed an external link to itself, and did not recognize that it was the same file. Similar tests in links.c were skipped when the core file driver was used. The failure was previously masked by inappropriate file flushes caused by external link traversal. Added code to the core file driver to keep track of low level file information of the backings store to allow for accurate recognition of duplicate files. Also re-enabled all links.c tests for the core file driver. Tested: Fedora (core and sec2 drivers; no time for full commit test, will monitor daily tests)
* [svn-r18391] Description:Quincey Koziol2010-03-071-194/+271
| | | | | | | | Clean up compiler warnings, check error values and fix whitespace. Tested on: FreeBSD/32 6.3 (duty) w/debug (too minor to require h5committest)
* [svn-r18388] Description:Quincey Koziol2010-03-069-949/+1030
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring changes from Coverity session from branch into trunk: r18378: Fixed coverity issues 207 and 322. Pointer hdr was checked for NULL after being asserted and dereferenced. Check was removed. r18379: Fix coverity issues # 88 and # 435. r18380: Fixed Coverity issue # 85. Added check of returned pointer for NULL before use. r18381: Resolve coverity issues # 214 and # 215 r18382: Issue 131: Add null checks to allocations and check for free in error handling r18383: Issue 421: Reorganized code to make intention clearer. Also, set local variable fl to NULL after transfer to tail. Heap->freelist will take care of all allocations r18384: Coverity #249 and #250 - STRING_ATT_CHECK wasn't allocated before being used and freed in function test_write_vl_string_attribute and test_read_vl_string_attribute. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & prod (h5committested in daily tests)
* [svn-r18385] Description:Quincey Koziol2010-03-061-15/+17
| | | | | | | | Tweak fix in r18372 to reset other messages read in also. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & production (too minor to require h5committest)
* [svn-r18376] Purpose: Fix bug 1733Neil Fortner2010-03-056-82/+294
| | | | | | | | | Description: Support for expanding external links was not implemented in H5Ocopy, even though a flag existed for H5Pset_copy_object to enable this. This patch implements this feature. Tested: jam, amani, linew (h5committest); Fedora
* [svn-r18374] Purpose: Fix bugs involving external linksNeil Fortner2010-03-055-28/+191
| | | | | | | | | | | | Description: Previously, the library would reopen the source file when traversing an external link if unable to find the target file otherwise. This has been corrected. Also moved the call to H5F_flush from H5F_try_close to H5F_dest, so the file is only flushed when the last identifier for the file is closed. This prevernts situations where the library could attempt to flush a file with protected metadata. Tested: jam, amani, linew (h5committest); Fedora
* [svn-r18372] Fix for bug #1773 - I added the call to H5O_msg_reset after ↵Raymond Lu2010-03-051-1/+11
| | | | | | | | H5D_chunk_bh_info to free the PLINE structure in the function H5O_dset_bh_info. This is to prevent memory leak. Tested on jam and tested 1.8 on jam, too - simple fix.
* [svn-r18369] Update MANIFEST, added bin/README file. Tested on jam.Larry Knox2010-03-041-0/+1
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* [svn-r18367] The OpenVMS linking probably doesn't like too many object ↵Raymond Lu2010-03-041-1/+2
| | | | | | | | | files. I just broke the link command into two commands to make it happy. Tested on OpenVMS.
* [svn-r18366] Binh-Minh integrated dsets.cpp into testhdf5.cpp. I changed ↵Raymond Lu2010-03-041-9/+2
| | | | | | | | the make file accordingly. I'll wait for her to check into the 1.8 branch to make the same change in 1.8. Tested on OpenVMS.
* [svn-r18365] Edit README file to test svk sync.Larry Knox2010-03-031-0/+1
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* [svn-r18364] Edit README file to test svk sync.Larry Knox2010-03-031-1/+1
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* [svn-r18363] Add README file to bin directory.Larry Knox2010-03-031-0/+1
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* [svn-r18362] Test commit from windowsAllen Byrne2010-03-031-0/+2
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* [svn-r18361] Removed project files for cpp versions of standalone dsets tests.Allen Byrne2010-03-031-2/+0
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* [svn-r18360] Updated project files and release docs to VS2008 and IVF101 based.Allen Byrne2010-03-03268-4931/+2901
| | | | | | Made change to cpp version of testhdf5 for the elimination of dsets standalone. Tested: Windows
* [svn-r18357] Description:Quincey Koziol2010-03-0227-170/+127
| | | | | | | | | | | | | | | | | | | | | | | | Bring r18356 from metadata journaling merge branch to trunk: Converge metadata journaling branch with trunk with a bunch of v1 B-tree changes: - Remove H5ACprivate.h header from H5Bprivate.h header - Revise v1 B-tree client callbacks - Get rid of H5B_serialize() by bringing it into H5B_flush() Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18352] Description:Quincey Koziol2010-03-011-40/+45
| | | | | | | | | | | | | | | | | | | | | | Make parallel I/O metadata cache operations obey the "evictions enabled" flag in the cache. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18350] Snapshot version 1.9 release 61HDF Tester2010-02-2814-28/+28
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* [svn-r18349] Description:Binh-Minh Ribler2010-02-283-23/+17
| | | | | | | | In the previous revision, dsets.cpp was moved from a standalone program into testhdf5.cpp to be consistent with the rest of the tests. Makefiles were left out by mistake. Platform tested: Verified on Linux/32 2.6 (jam)
* [svn-r18346] Description:Quincey Koziol2010-02-2730-936/+1305
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring Coverity fixes back from branch to trunk: r18336: Fix coverity issues 275, 276, 277, 323, 432, 433, and 434 r18337: Fix Coverity issue #106: release free space section node on error r18338: Fixed Coverity #94 - In H5P_register, new_class wasn't closed when there's an error after it's created. r18339: Fix Coverity #185 - In test_conv_str_1, BUF wasn't freed when there's an error in this function. r18340: Correct error in r18337 that wasn't releasing indirect fractal heap block early enough. r18341: Close nodes if any failed in the middle of allocating new nodes. Coverity 140 and 141 r18342: Correct [another] problem w/r18337. r18343: Fix coverity items 185, 20, and 21. r18344: Fix Coverity 213 - In H5FD_family_close, the double pointer file->memb was dereferenced without NULL checking (We believe). r18345: Fix Coverity issue # 210; removed NULL check after pointer dereferenced in H5HFdblock.c. Also assigned NULL to pointer in H5Pint.c to fix segmentation fault. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18335] Description:Binh-Minh Ribler2010-02-2612-78/+78
| | | | | | | | | | Removed header file testhdf5.h from C++ tests to eliminate a non-standard problem on OpenVMS. It wasn't essential. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) Ray agreed to test on OpenVMS.
* [svn-r18331] Description:Jonathan Kim2010-02-241-16/+5
| | | | | | | | Update to use H5Gcreate2 instead of H5Gcreate. Remove mis-used type related code. Tested: jam, amani and linew
* [svn-r18329] Description:Jonathan Kim2010-02-241-1/+1
| | | | | | | Fix to handle $srcdir for nightly test as well as local testing Tested: jam, amani and linew
* [svn-r18328] I commented out the macro H5_HAVE_SYMLINK because I ran the ↵Raymond Lu2010-02-241-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | following C test under hdf5/test directory. OpenVMS couldn't open a file through symbolic link. This macro is mainly used in test/links.c for the function call external_symlink and in src/H5F.c. Tested the same change for 1.8 on OpenVMS. ------------------------------------------------------------------------ #include <stdio.h> #include <unistd.h> #include <sys/types.h> #include <sys/stat.h> #include <fcntl.h> #include <errno.h> int main(void) { int file1, file2; /* Create a symbolic link to the file 21b.c */ if(symlink("[LU.hdf5_1_8_2_5.test.tmp2]21b.c", "[LU.hdf5_1_8_2_5.test.tmp]sym1") < 0) printf("symlink failed\n"); /* Create the file 21b.c */ if((file1 = open("[LU.hdf5_1_8_2_5.test.tmp2]21b.c", O_CREAT | O_TRUNC | O_RDWR)) < 0) printf("1st open failed\n"); if(close(file1) < 0) printf("close failed\n"); /* Open the 21b.c through the symbolic link */ if((file2 = open("[LU.hdf5_1_8_2_5.test.tmp]sym1", O_RDWR)) < 0) { int errsv = errno; printf("2nd open failed, errno=%d\n", errsv); } if(close(file2) < 0) printf("close failed\n"); return 0; }
* [svn-r18325] Updated test script to match *nix shell script. Allen Byrne2010-02-231-0/+7
| | | | Tested: windows
* [svn-r18322] Updated test script to match *nix shell script. Allen Byrne2010-02-231-5/+38
| | | | Tested: windows
* [svn-r18320] Forgot to remove comments for cleaning up test.out file from ↵Jonathan Kim2010-02-231-3/+3
| | | | previous checkin r18319.
* [svn-r18319] Purpose:Jonathan Kim2010-02-236-21/+409
| | | | | | | | | | | Bug1727 - h5copy: add test cases for object and region references File added: tools/h5copy/testfiles/h5copy_ref.out.ls tools/h5copy/testfiles/h5copy_ref.h5 Tested: jam, linew
* [svn-r18317] Updated test script to match *nix shell script. Also corrected ↵Allen Byrne2010-02-232-3/+185
| | | | 629 file exit code
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