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* Fixed EED-319Binh-Minh Ribler2018-07-185-35298/+24282
| | | | | | | | | Description: - Fixed doc issue Added an html version for the C++ function mapping table and removed the single web page version. Updated cpp_doc_config to use the html file. - Added a couple more minor tests
* Merge branch 'develop' of ↵Binh-Minh Ribler2018-07-170-0/+0
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp4 into develop
| * Merge pull request #1140 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp4:develop ↵Binh-Minh Ribler2018-07-178-10/+349
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop Fixed part of HDFFV-10458: wrappers for H5Oget_info2, H5Oget_info_by_name2, and H5Oget_info_by_idx2. * commit '3aa24435180d10aeca6493f7c1b277cfd5c73fad': Fixed HDFFV-10458 partially Description: Added wrappers for H5Oget_info_by_idx2. Fixed comments Fixed HDFFV-10458 partially Description: Added wrappers for H5Oget_info2 and H5Oget_info_by_name2.
* | | Fixed HDFFV-10472Binh-Minh Ribler2018-07-173-0/+98
| |/ |/| | | | | | | | | | | | | | | | | Description: Added operator!= to DataType bool operator!=(const DataType& compared_type) Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* | Fixed HDFFV-10458 partiallyBinh-Minh Ribler2018-07-174-9/+163
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Added wrappers for H5Oget_info_by_idx2. // Returns information about an HDF5 object, given its index. void getInfo(const char* grp_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) void getInfo(const H5std_string& grp_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* | Fixed commentsBinh-Minh Ribler2018-07-172-6/+14
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* | Merge branch 'develop' of ↵Binh-Minh Ribler2018-07-177-41/+612
|\ \ | |/ | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp4 into develop
| * Merge pull request #1139 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp4:develop ↵Binh-Minh Ribler2018-07-173-4/+12
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop Fixed HDFFV-10476, HDFFV-10478, HDFFV-10480 * commit 'fe916ada370f33b48b3c39dbf9e3ff73df00fdb7': Removed white space Fixed HDFFV-10476, HDFFV-10478, HDFFV-10480 Description: Fixed potential out of bound read and NULL pointer dereferences. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * \ Merge pull request #1135 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developLarry Knox2018-07-177-41/+612
| |\ \ | | | | | | | | | | | | | | | | | | | | * commit '46986950ad2818a5235c821fa576e0f6470b39be': TRILAB-31 add note TRILAB-31 Working locally
| | * \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-07-164-27/+43
| | |\ \ | | |/ / | |/| | | | | | | | | | | | | | | | | | * commit '55666ace551369b3d72430c090ab9f1571e1be75': Combined macro lines as Dana commented Platforms tested: Linux/64 (jelly) (very minor) Fix evaluation of __has_attribute(no_sanitize_address) on older GCC versions Fixed division-by-zero issues Description: Fixed HDFFV-10481 and HDFFV-10477, division by 0. Fixed another occurrence beside what were reported. Also, changed a local variable to avoid an unnecessary cast. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| | * | TRILAB-31 add noteAllen Byrne2018-07-161-1/+7
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| | * | TRILAB-31 Working locallyAllen Byrne2018-07-166-40/+605
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* | | | Fixed HDFFV-10458 partiallyBinh-Minh Ribler2018-07-176-10/+187
| |_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Added wrappers for H5Oget_info2 and H5Oget_info_by_name2. // Returns information about an HDF5 object. void getInfo(H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC) // Returns information about an HDF5 object, given its name. void getInfo(const char* name, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) void getInfo(const H5std_string& name, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* | | Removed white spaceBinh-Minh Ribler2018-07-171-1/+2
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* | | Fixed HDFFV-10476, HDFFV-10478, HDFFV-10480Binh-Minh Ribler2018-07-173-4/+11
|/ / | | | | | | | | | | | | | | | | Description: Fixed potential out of bound read and NULL pointer dereferences. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* | Merge pull request #1134 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp4:develop ↵Binh-Minh Ribler2018-07-163-24/+36
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop Fixed HDFFV-10481 and HDFFV-10477 * commit '83ca39ba9a2d6852dd7754b533f7839e9d2a0107': Combined macro lines as Dana commented Platforms tested: Linux/64 (jelly) (very minor) Fixed division-by-zero issues Description: Fixed HDFFV-10481 and HDFFV-10477, division by 0. Fixed another occurrence beside what were reported. Also, changed a local variable to avoid an unnecessary cast. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * | Combined macro lines as Dana commentedBinh-Minh Ribler2018-07-163-6/+3
| | | | | | | | | | | | | | | Platforms tested: Linux/64 (jelly) (very minor)
| * | Fixed division-by-zero issuesBinh-Minh Ribler2018-07-163-24/+39
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Fixed HDFFV-10481 and HDFFV-10477, division by 0. Fixed another occurrence beside what were reported. Also, changed a local variable to avoid an unnecessary cast. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* | | Merge pull request #1136 in HDFFV/hdf5 from ↵Jerome Soumagne2018-07-161-3/+7
|\ \ \ | |_|/ |/| | | | | | | | | | | | | | ~JSOUMAGNE/hdf5_fork:topic_sanitize_gcc48_fix to develop * commit 'd5e7134df911808bba26ac6629e1fe8324916585': Fix evaluation of __has_attribute(no_sanitize_address) on older GCC versions
| * | Fix evaluation of __has_attribute(no_sanitize_address) on older GCC versionsJerome Soumagne2018-07-161-3/+7
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* | Merge pull request #1112 in HDFFV/hdf5 from ↵Jerome Soumagne2018-07-161-7/+5
|\ \ | | | | | | | | | | | | | | | | | | ~JSOUMAGNE/hdf5_fork:gcc_sanitize to develop * commit '5afeefe1bae62fa5faf06c0c6f240e10863a2693': Fix H5detect to use no_sanitize_address attribute and support GCC sanitizers
| * | Fix H5detect to use no_sanitize_address attribute and support GCC sanitizersJerome Soumagne2018-06-151-7/+5
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* | | Merge pull request #1127 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2018-07-164-929/+4626
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'a8d6f100cdddbfc42d0c4abfeb4ceb8788b1b087': Add note about single chunk caching and serial library Add check for actually using the MPI file driver when caching one chunk Fix error message mentioning wrong MPI function used Fix for HDFFV-10509 Revise H5D__mpio_array_gatherv() to not allocate memory needlessly Add test to continually grow and shrink chunks Changes to test with checksum filter as well as deflate filter Eliminate warning about signed to unsigned conversion Remove unused local variable Fix bug in parallel reads of compressed data Add data verification to parallel filtered compound write tests Add seven of fourteen parallel filtered data partial read tests
| * | | Add note about single chunk caching and serial libraryJordan Henderson2018-07-131-1/+7
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| * | | Add check for actually using the MPI file driver when caching one chunkJordan Henderson2018-07-131-1/+15
| | | | | | | | | | | | Better explain rationale behind chunk caching issue fix
| * | | Fix error message mentioning wrong MPI function usedJordan Henderson2018-07-131-1/+1
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| * | | Fix for HDFFV-10509Jordan Henderson2018-07-041-2/+15
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| * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Jordan Henderson2018-07-03261-5651/+6851
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'b6fcbf4bb0f693fd6a0517f0ff3f74d52b329d1e': (400 commits) Fix ptr arith Correct function call Remove writeVL option Region reference in compounds need class check Correct cast formatting Correct var name Need to cast from void ptr Update Java util lib, Refactor H5D write VL to match read Fix attribute Read Correct "," handling Revert "Merge pull request #1116 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to develop" Snapshot version 1.10 release 3 (snap3) Remove debug statements Split/fix utility for vl types fix whitespace HDFVIEW compound vlen needed vlen_t size Update documents Update document Update document HDFFV-10433 Update file with fix for issues ...
| * | | | Revise H5D__mpio_array_gatherv() to not allocate memory needlesslyJordan Henderson2018-06-061-38/+61
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| * | | | Add test to continually grow and shrink chunksJordan Henderson2018-06-042-0/+149
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| * | | | Changes to test with checksum filter as well as deflate filterJordan Henderson2018-06-042-35/+92
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| * | | | Eliminate warning about signed to unsigned conversionJordan Henderson2018-05-171-4/+4
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| * | | | Remove unused local variableJordan Henderson2018-05-171-7/+4
| | | | | | | | | | | | | | | Ensure frees are done in a more heap-fragmentation friendly order
| * | | | Fix bug in parallel reads of compressed dataJordan Henderson2018-05-173-16/+954
| | | | | | | | | | | | | | | Add remaining parallel compound dataset partial read tests
| * | | | Add data verification to parallel filtered compound write testsJordan Henderson2018-05-172-354/+1128
| | | | | | | | | | | | | | | Add 3D parallel filtered partial read tests
| * | | | Add seven of fourteen parallel filtered data partial read testsJordan Henderson2018-05-152-668/+2394
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* | | | | Merge pull request #1131 in HDFFV/hdf5 from HDFFV-10527-typo-in-h5fs.c to ↵Larry Knox2018-07-160-0/+0
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit 'cb38d210c3ec4945fd47b5861d7db137e0efac55': HDFFV-10527:corrected two more typos. HDFFV-10527:corrected typos in comment blocks.
| * | | | | HDFFV-10527:corrected two more typos.Hyo-Kyung Lee2018-07-121-2/+2
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| * | | | | HDFFV-10527:corrected typos in comment blocks.Hyo-Kyung Lee2018-07-121-2/+2
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* | | | | | Merge pull request #1128 in HDFFV/hdf5 from HDFFV-10525-typo-in-vds.c to developLarry Knox2018-07-161-1/+1
|\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '863148d1fe0b6949708698ad9277dbdba8129e0c': fixed typo.
| * | | | | | fixed typo.Hyo-Kyung Lee2018-07-101-1/+1
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* | | | | | Merge pull request #1133 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp4:develop ↵Binh-Minh Ribler2018-07-14101-318/+317
|\ \ \ \ \ \ | | |_|_|_|/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop Fixed HDFFV-10404 * commit 'ec31438afdaf575368938e930eb3af0865a342b3': Fixed HDFFV-10404 Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
| * | | | | Fixed HDFFV-10404Binh-Minh Ribler2018-07-13101-318/+317
| | |/ / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
* | | | | Merge pull request #1129 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2018-07-1324-150/+499
|\ \ \ \ \ | |/ / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '08de02c838c05993fea5febb9c320a679e7f841a': Changes based on feedback from pull request. Fix test_misc33() in test/tmisc.c Open the test file read-only so that it can be accessed for testing. Modifications made based on feedback from pull request. Fix for HDFFV-10333: 1) Check for valid object header version for a refcount messge 2) Check for invalid fill value size 3) Check for invalid dimension size in a layout message 4) Add --enable-error-stack option to h5stat 5) Add error checks to h5stat.c 6) Add tests to h5stat and h5dump Fix daily test failure.
| * | | | Merge branch 'develop' of ↵Vailin Choi2018-07-121-1/+1
| |\ \ \ \ | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into develop
| | * | | | Fix test_misc33() in test/tmisc.cVailin Choi2018-07-121-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | Open the test file read-only so that it can be accessed for testing.
| * | | | | Changes based on feedback from pull request.Vailin Choi2018-07-123-6/+3
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| * | | | Modifications made based on feedback from pull request.Vailin Choi2018-07-116-12/+50
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| * | | | Fix for HDFFV-10333:Vailin Choi2018-07-1120-147/+461
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 1) Check for valid object header version for a refcount messge 2) Check for invalid fill value size 3) Check for invalid dimension size in a layout message 4) Add --enable-error-stack option to h5stat 5) Add error checks to h5stat.c 6) Add tests to h5stat and h5dump
| * | | | Merge branch 'develop' of ↵Vailin Choi2018-06-013-5/+23
| |\ \ \ \ | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into develop
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