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* [svn-r15825] Description:Quincey Koziol2008-10-0922-650/+806
| | | | | | | | | | | | | | | | | | | | | | | | Fix various problems with a the core & sec2 VFDs. Improve the h5_get_file_size() routine to handle files created with VFDs that use multiple files. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15824] Updated a bug fix information.Albert Cheng2008-10-081-0/+2
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* [svn-r15822] Bug fix: #1090Albert Cheng2008-10-086-16/+16
| | | | | | | | | | | The custom rules for installing h5cc, h5fc, and the fortran modules in fortran and in hl/fortran don't use $(DESTDIR). Added it to all those rules. Tested: kagiso both serial and parallel with fortran and cxx enabled. Tested by: make install make DESTDIR=/tmp/acheng install diff -r /tmp/acheng/.../hdf5 hdf5
* [svn-r15819] Modifications for bug #1253:Vailin Choi2008-10-081-7/+22
| | | | | | | | | 1. Fixed segmentation fault in print_group_info() 2. Call print_statistics() in main() when objects/links are successfully traversed; otherwise, return warning message. line, and those below, will be ignored-- M h5stat/h5stat.c
* [svn-r15818] Fixed error in metadata cache configuration validation code ↵John Mainzer2008-10-081-0/+1
| | | | | | | | | | | uncovered when updating documentation for "cork the cache" and flash cache size increment code. Tested: Serial on Phoenix Parallel on Kagiso Serial on Linew
* [svn-r15816] Purpose: Update h5ls test scriptScott Wegner2008-10-082-0/+9
| | | | | | | | | | Description: The general h5ls test script was recently updated. This checkin brings those changes to Windows Also add freespace & mf to general test script, since I forgot in the last checkin Tested: VS2005 on WinXP
* [svn-r15815] Purpose: Add new source code and tests to WindowsScott Wegner2008-10-089-395/+2063
| | | | | | | | | | Description: Many new source files were added from the freespace branch. This checkin adds the code to Windows as well. Note: Some tests are still failing on Windows, but this checkin brings us closer to fixing them. In particular, freespace test fails on compile (Quincey is working on it), and the DLL links test fails at runtime (I'll look into it) Tested: VS2005 on WinXP
* [svn-r15810] Some test produced files were not cleaned by "make clean".Albert Cheng2008-10-082-6/+6
| | | | | | Added them to the clean list. Tested: kagiso.
* [svn-r15808] Some test produced files were not cleaned by "make clean".Albert Cheng2008-10-084-4/+5
| | | | | | Added them to the clean list. Tested: kagiso, serial and parallel.
* [svn-r15807] correction in test name, testing "non" initialized chunksPedro Vicente Nunes2008-10-071-2/+2
| | | | tested: windows, linux
* [svn-r15804] Purpose: Add option to h5ls to enable external link traversal.Neil Fortner2008-10-0716-11/+68
| | | | | | | | Description: Added -E option to h5ls. When set, this alows h5ls to enter external files (currently only through an external link). The -r option by itself will no longer allow h5ls to traverse external links. Tested: kagiso, linew, smirom (h5committest)
* [svn-r15802] Description:Quincey Koziol2008-10-071-994/+1090
| | | | | | | | | Skip some file free space tests that deal with aligned allocations when using the stdio VFD, which has its own allocation process that drops the unaligned fragments instead of tracking them with the free space manager. Tested on: Mac OS X/32 10.5.5 (amazon) w/stdio VFD
* [svn-r15800] Description:Quincey Koziol2008-10-07126-6401/+18008
| | | | | | | | | | | | | | | | | | | | | | | Bring file free space branch changes through r15795 into trunk, which includes a fair bit of code cleanup & rearrangement along with a couple of bug fixes also. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15798] Description:Quincey Koziol2008-10-071-1/+1
| | | | | | | | Change H5Tcommit() call to H5Tcommit2() call, so that library builds with the default API set to v16 work. Tested on: Linux/64 2.4 (smirom) w/default API set to v16
* [svn-r15796] Purpose: Close bug #1322Neil Fortner2008-10-0713-76/+246
| | | | | | | | | Description: Fixes a possible datatype id leak that could occur during compound datatype conversion, or more precisely, when unregistering those conversions. Datatype ids normally registered by the library are no longer visible to the application via H5Fget_obj_ids and H5Fget_obj_count. Tested: kagiso, linew, smirom (h5committest)
* [svn-r15792] Bug fix. When detecting the user requested filters, the "all" ↵Pedro Vicente Nunes2008-10-062-39/+67
| | | | | | option was not taken in consideration when printing the compression ratio Tested: windows, linux
* [svn-r15789] Purpose: Add new source file, H5EAsblock.c, to WindowsScott Wegner2008-10-062-0/+8
| | | | | | | Description: The source file H5EAsblock.c was recently added to svn. This checkin also adds it into our Windows project files. Note that it hasn't been included in the Visual Studio .NET projects. We are discontinuing our support for Visual Studio .NET in the trunk so we can use C99 features not available in Visual Studio .NET. From this point forward, the Visual Studio .NET projects won't be maintained, and will likely be deleted before the 1.10 release.
* [svn-r15772] Added feature to display file open and close times.Christian Chilan2008-10-031-4/+39
| | | | Tested on kagiso and cobalt.
* [svn-r15767] Fix version numbers in vms h5pubconf.hNeil Fortner2008-10-031-3/+3
| | | | Tested: gedit
* [svn-r15762] Changes for bug #1247 so that the user can specify the driverVailin Choi2008-10-036-25/+743
| | | | | | | | | | | | to use when opening the external linked target file. 1. Two new public routines are added to H5Plapl.c as well as "del/copy/close" callbacks for the property itself. 2. Modify H5L_extern_traverse() to use the fapl set via H5Pset_elink_fapl() and retrieve via H5Pget_elink_fapl(). 3. Add 3 tests to links.c to verify H5Pset/get_elink_fapl(). Also fix the compiler warning for the "if condition" in H5_build_extpath() of H5system.c.
* [svn-r15758] Description:Quincey Koziol2008-10-021-14/+78
| | | | | | | | | | | | | | | | | | | | | Extend extensible array tests Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15757] Bug #1312Pedro Vicente Nunes2008-10-022-148/+339
| | | | | | | Solution: Check for the existence of chunks before pruning them (an assertion was triggered when attempting to do so) Tested: windows , linux, solaris
* [svn-r15755] Description:Quincey Koziol2008-10-024-17/+117
| | | | | | | | | | | | | | | | | | | | | | Fix some minor problems w/extensible array super blocks and extend tests. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15749] Description:Scot Breitenfeld2008-10-012-4/+3
| | | | Removed blank lines
* [svn-r15748] Fixed spelling errorsScot Breitenfeld2008-10-011-3/+2
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* [svn-r15746] Description:Quincey Koziol2008-10-0118-33/+935
| | | | | | | | | | | | | | | | | | | | | Add support for extensible array "super block". Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15744] Description:Scot Breitenfeld2008-10-012-15/+0
| | | | Removed extraneous comments and unused code.
* [svn-r15741] Description:Quincey Koziol2008-09-301-0/+5
| | | | | | | | | | | | | | | | | | | | | Extend testing for data block reachable from the index block. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15738] Description:Quincey Koziol2008-09-302-4/+11
| | | | | | | | | | | | | | | | | | | | | | Correct a couple of minor bugs for handling data blocks from index block and extend tests further. Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15737] Description:Scot Breitenfeld2008-09-308-19/+123
| | | | | Changed the tests so that the *.h5 test files are removed depending on the HDF5_NOCLEANUP environment variable. bug 696
* [svn-r15733] #1307Pedro Vicente Nunes2008-09-301-0/+3
| | | | | | A space id was not closed in H5PTopen Tested: windows, linux
* [svn-r15723] Purpose: Add h5import test to WindowsScott Wegner2008-09-292-1/+6
| | | | | | | | Description: Add a new test for h5import to check for alignment. Also fix the failing h5repack test, now that ublock has been added to svn. Tested VS2005 on WinXP
* [svn-r15721] Added a file with user block data to be used by the h5repack ↵Pedro Vicente Nunes2008-09-292-1/+2
| | | | windows shell script only Note: for the unix shell script this file is not used
* [svn-r15713] Snapshot version 1.9 release 19HDF Tester2008-09-289-61/+61
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* [svn-r15711] Purpose:Albert Cheng2008-09-271-7/+31
| | | | | | | | | | features. Description: Added -shlib tests and verbosity control. Tested Platform: Kagiso.
* [svn-r15705] bug fixPedro Vicente Nunes2008-09-262-0/+1
| | | | | | make a test generate a LE output for test portability tested: linux, solaris
* [svn-r15704] I changed the return values of H5Fget_obj_ids and ↵Raymond Lu2008-09-2612-75/+132
| | | | | | | | H5Fget_obj_count to ssize_t and modified C++ and Fortran API functions. This is for bug #1245. Tested on smirom, linew, and kagiso.
* [svn-r15703] Description:Quincey Koziol2008-09-259-617/+215
| | | | | | | | | | | | | | | | | | | | | | Further progress on extensible array implementation - add support for more data blocks from index block. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15701] Description:Quincey Koziol2008-09-251-12/+4
| | | | | | | | | | | | | | | | | | | | | Remove some unused variables. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15699] Bug fix #1281Pedro Vicente Nunes2008-09-256-31/+47
| | | | | | | | | | The TEXTFPE was described in the usage (read floats in scientific notation) but was not implemeneted. Solution: remove TEXTFPE from the help system and have the TEXTFPE input type do the same thing as TEXTPF currently does to support backwards compatibility (the format read for both TEXTFPE and TEXTPF is %f) added a test tested: windows, linux
* [svn-r15696] Description:Scot Breitenfeld2008-09-251-5/+7
| | | | Fix for test of H5Tget_native_type_f
* [svn-r15693] Description:Scot Breitenfeld2008-09-242-30/+58
| | | | Added test for h5tget_native_type_f
* [svn-r15692] Description:Scot Breitenfeld2008-09-241-16/+20
| | | | Added the optional 'mounted' variable to H5Gget_info_by_idx_f/H5Gget_info_f/H5Gget_info_by_name_f to see that it passes the correct values.
* [svn-r15691] Cosmetic changes.Scot Breitenfeld2008-09-241-3/+2
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* [svn-r15690] Description:Scot Breitenfeld2008-09-242-71/+70
| | | | In nH5Sget_select_bounds_c swapped array bounds to account for C and Fortran reversed array notation.
* [svn-r15689] Description:Scot Breitenfeld2008-09-242-6/+224
| | | | Added additional tests for h5sget_select_bounds_f
* [svn-r15688] Description:Scot Breitenfeld2008-09-232-1/+756
| | | | | Added additional tests for h5sget_select_hyper_blocklist_f and 5sget_select_elem_pointlist_f
* [svn-r15687] Description:Scot Breitenfeld2008-09-232-27/+64
| | | | | | | | Fixed nh5sget_select_hyper_blocklist_c nh5sget_select_elem_pointlist_ for bug 1319. by transposing arrays for C-FORTRAN convention.
* [svn-r15684] New feature (h5diff -c)Pedro Vicente Nunes2008-09-231-0/+2
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* [svn-r15682] Purpose: fix bug 1298Neil Fortner2008-09-229-47/+228
| | | | | | | | | | | Description: The optimized "subset" compound conversion function would improperly copy the "blank" space at the end of compound types. Modified H5T_conv_struct_init to detect when the subset type has extra space at the end, and calculate the size of the data that should be copied into the conversion buffer for each element. Changes to the functions that implement these conversions. Tested: kagiso, linew, smirom (h5committest)
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