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* [svn-r19059] Brought changes from hdf5_1_8 to add version information for ↵Larry Knox2010-07-0964-89/+1248
| | | | | | fortran and c++ compilers in libhdf5.settings file and configure output (r18836), to install examples as part of make install (r18680), and to provide scripts to compile and run the examples after they are installed (r18817). Tested with new/h5committest on amani, heiwa, and jam.
* [svn-r19057] Purpose: Jonathan Kim2010-07-081-0/+4
| | | | | | | | | | add reference file entries for the new test expected output files Description: This is dependent to r19051. Tested: Windows (cmake)
* [svn-r19056] Added code to retrieve version info from H5public.h; corrected ↵Allen Byrne2010-07-083-6/+14
| | | | a typo in a configure check and a macro
* [svn-r19052] Add thlink-1.ls entry back which was mistakenly removed from ↵Jonathan Kim2010-07-071-0/+1
| | | | previous checkin.
* [svn-r19051] Purpose:Jonathan Kim2010-07-0717-194/+397
| | | | | | | | | | | Add --no-dangling-links option to h5ls. Description: Related to "Bug 1830 - Following an dangling external link in h5ls should set non-zero return code." If --no-dangling-links option is specified and any dangling link is found, return exit code 1 (error). Tested: jam, amani and heiwa
* [svn-r19047] Snapshot version 1.9 release 72HDF Tester2010-07-0414-29/+29
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* [svn-r19037] Added executable Linker Flag for MSVC static builds: ↵Allen Byrne2010-06-2925-43/+580
| | | | | | | | /NODEFAULTLIB:MSVCRT Added VERSION vars for inclusion into auto snapshot version update script Tested windows
* [svn-r19034] Purpose:Jonathan Kim2010-06-282-0/+36
| | | | | | | | | | Change h5ls not to manipulate special characters in object name or attribute name for smart display. Description: Related to "But1784 h5ls has input and output issues with links that have '\' characters in them." Tested: jam, amani and linew
* [svn-r19032] Correct use of variable in windows dll builds by changing ↵Allen Byrne2010-06-282-2/+2
| | | | | | qualifier from extern to H5_DLLVAR. Turned off default packed bits setting as feature is not available for trunk
* [svn-r19031] Snapshot version 1.9 release 71HDF Tester2010-06-2814-29/+29
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* [svn-r19028] added new cmake files for testingAllen Byrne2010-06-221-0/+2
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* [svn-r19027] Add testing files to cmake resources.Allen Byrne2010-06-223-0/+47
| | | | | | Added code coverage option to cmake. Tested: local linux
* [svn-r19025] Correct defines for zlib and szipAllen Byrne2010-06-211-10/+9
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* [svn-r19022] Snapshot version 1.9 release 70HDF Tester2010-06-2015-51/+37
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* [svn-r19019] Enhancements:Albert Cheng2010-06-181-12/+9
| | | | | | | | | | | | | | | | | Cleaned up the code a bit by: 1. It used to that -xxx options must be at the beginning such that "buildhdf5 --disable-shared -config" was an error. Now -xxx options can appear anywhere in the command options. 2. Eliminate the need of variables $CONFIG_CXX, $CONFIG_FORTRAN, $CONFIG_PARALLEL by appending their values to $CONFIG_OP directly. 3. Also append $WITH_SZLIB to $CONFIG_OP when it is defined, not later. 4. Call CONFIG directly instead of setting up $CONFIGURE. 5. Removed the last TIMESTAMP since "trap 0" will call QUIT which calls TIMESTAMP already. This eliminated the extra timestamp when it finishes normal. tested: Tested by hand since h5committest does not really test this command.
* [svn-r19017] Purpose:Mike McGreevy2010-06-172-4/+5
| | | | | | | | | | | | | | | | Minor code cleanup Description: Add missing declaration of H5AC_ignore_tags() to H5ACprivate.h Clean up some warnings in cache_tagging.c test file Tested: jam, gandalf
* [svn-r19015] Description:Quincey Koziol2010-06-172-16/+15
| | | | | | | | | | Remove unused 'ATYPE' parameter from H5T_CONV() macro Remove unused 'result' variable from H5AC_set() Tested on: Mac OS X/32 10.6.4 (amazon) w/debug & production (too minor to require h5committest)
* [svn-r19010] Purpose:Mike McGreevy2010-06-163-9/+5
| | | | | | | | | | | | | | Clean up code. Description: Reorganize to remove mixed declarations and code (which should satisfy windows compile). Tested: jam, blue print, gandalf Windows 7 w/ VS Express 2008 (on VMware)
* [svn-r19008] Purpose:Mike McGreevy2010-06-162-16/+16
| | | | | | | | | | | | | | | | | Fix some tagging issues. Description: - changed H5Gcreate to H5Gcreate2 in the cache_tagging.c test file to work properly with 1.6 API default mapping turned on. - Added FUNC_ENTER/LEAVE_*TAG macros to the H5G_stab_valid function. Tested: gandalf, jam, amani (w/ production mode, 1.6 API mapping)
* [svn-r19006] Purpose: Improve performance of the the chunk cacheNeil Fortner2010-06-154-225/+185
| | | | | | | | | | Description: Previously, the chunk cache would, when looking for a chunk, alwaylook for the chunk in the b-tree before checking the cache. Reworked the functions that look up chunks to always check the cache first and avoid the b-tree lookup if the chunk is in cache. Tested: jam, linew, amani (h5committest)
* [svn-r19005] Purpose:Mike McGreevy2010-06-1556-188/+5383
| | | | | | | | | | | | | | | | | | | | | | | Commit metadata tagging framework. Description: This check-in contains a new framework whose goal is to apply a tag value to each new entry in the metadata cache as it is created. This tag value is such that it relates each piece of metadata to the HDF5 object that it belongs to (dataset, group, et cetera). This changeset includes the framework that applies the tags as well as a suite of tests to verify correct tag application, though does not yet make use of the tag values to flush/evict individual objects. Please refer to the "flush/evict individual objects" RFC for further discussion of these changes. Tested: jam, amani, linew (h5committest) liberty, abe, blue print
* [svn-r19001] Corrected large file optionAllen Byrne2010-06-141-1/+3
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* [svn-r18999] Removed and added files in CMake Resources folderAllen Byrne2010-06-141-1/+3
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* [svn-r18996] Updated config files and install commands per external ↵Allen Byrne2010-06-147-68/+193
| | | | | | developers recommendations. Tested: local linux
* [svn-r18992] Bug Fix: (ID 1921)Albert Cheng2010-06-113-34/+37
| | | | | | | | | | | | PHDF5 changed to use "mpiexec", instead of mpirun, as the default MPI applications startup command as defined in the MPI-2 definition, section 4.1. Note that only mpich related (using mpicc command) definitions are changed to mpiexec. Other favors like hcc, AIX, champion, are not changed since I don't have a way to verify them yet. Tested: jam and amani, using both current and new mpich. Did not h5committested since this affects PHDF5 configure only.
* [svn-r18987] Description:Frank Baker2010-06-081-0/+6
| | | | Add acknowledgment of LBNL contractual support.
* [svn-r18985] Test feature: (bugs 1919)Albert Cheng2010-06-084-5/+37
| | | | | | | | | | | | | | | | Problem: some launching command like yod (and sometimes mpirun), do not pass back the exit code of the executables back to the shell. It always returns 0 if it can launch the executable. This cause tests that expect non-zero exit code to fail incorrectly. Short term Solution: Added the feature that if $RUNSERIAL_NOEXITCODE is defined, do not test conditions that rely on non-zero exit code. Tests: dove-linux using RUNSERIAL=thgyod to see the failures and using $RUNSERIAL_NOEXITCODE=yes to bypass the errors. Also h5committested.
* [svn-r18984] Description:Albert Cheng2010-06-071-3/+9
| | | | | | | Fixed exit code (sometimes return code in Main) to follow the HDF5 standards. Tested: Tested in Dove-linux only since change is trivial and has passed in v1.8.
* [svn-r18976] Added comments regarding the -D_POSIX_SOURCE flag including a ↵Larry Knox2010-06-041-1/+12
| | | | | | reference to a discussion of the _POSIX_SOURCE, BSD_SOURCE, and _POSIX_C_SOURCE Macros and their intersaction at http://www.gnu.org/s/libc/manual/html_node/Feature-Test-Macros.html. Comment text only - not tested.
* [svn-r18965] Windows use of VC_EXTRALEAN no longer did anything. It has been ↵Allen Byrne2010-06-035-11/+8
| | | | | | | | replaced by WIN32_LEAN_AND_MEAN macro. This was the cause of a define conflict causing the use of grp1 and grp2 to be replaced with constants in the h5dumpgentest.c file. This also affected the use of the #include <winsock.h> needed by gethostname. The new include: winsock2.h has been added to h5private.h and either removed or updated in the other files. Tested: Windows
* [svn-r18963] Purpose:Mike McGreevy2010-06-032-0/+16
| | | | Add acknowledgments file to top level of hdf5 trunk distribution.
* [svn-r18958] Purpose:Jonathan Kim2010-06-031-12/+12
| | | | | | Fixed Windows compile error. Renamed to use 'gid1' and 'gid2' instead of 'grp1' and 'grp2'. Description: There is variable name confliction with 'grp1' ~ 'grp9' in Windows system. It occurs if H5private.h is included in the code.
* [svn-r18956] Corrected name of external librariesAllen Byrne2010-06-031-2/+2
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* [svn-r18950] Correct version numbers for trunkAllen Byrne2010-06-021-3/+3
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* [svn-r18949] Corrected where the static *.mod files are installed toAllen Byrne2010-06-021-6/+6
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* [svn-r18947] Purpose:Jonathan Kim2010-06-021-6/+22
| | | | | | | | Update Windows testing for h5ls according to the updates for Support follow symbolic links. Description: Sync with hdf5 trunk SVN r18943
* [svn-r18943] Purpose:Jonathan Kim2010-06-0226-218/+842
| | | | | | | | | | | | Support follow symbolic links. Description: Add '--follow-symlinks' option to follow symbolic links (soft and external). Update help page according to RM. Remove some warning messages from compiler. Tested: jam, amani and linew
* [svn-r18942] Allen Byrne2010-06-011-1/+0
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* [svn-r18940] Update Cygwin and Windows referencesAllen Byrne2010-06-012-277/+16
| | | | Removed support for MinGW
* [svn-r18933] Update Cygwin install instructionsAllen Byrne2010-06-011-23/+14
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* [svn-r18930] Enabled mf test since it is fixed.Allen Byrne2010-06-011-2/+1
| | | | Tested: windows
* [svn-r18929] New feature:Albert Cheng2010-06-013-12/+79
| | | | | | | | | | Added ibm-flags to display the IBM XL compilers version information so that configure can report them in the configure summary and the libhdf5.settings file. For now, only the C compiler (xlc) versions are displayed. Also moved the C compiler options setting from ibm-aix to ibm-flags. Tested: NCSA Blue-print, both 32 and 64 bit modes.
* [svn-r18926] Description:Quincey Koziol2010-05-314-93/+67
| | | | | | | | Get down to just one "resize_configs_are_equal" comparison routine. Tested on: Mac OS X/32 10.6.3 (amazon) (too minor to require h5committest)
* [svn-r18925] Updated install of fortran mod filesAllen Byrne2010-05-282-8/+30
| | | | Tested: local linux
* [svn-r18922] Fix for failures for test/mf.c on windows:Vailin Choi2010-05-282-1/+8
| | | | | 1. H5FD_stdio_truncate() windows code: need to do a rewind 2. Make sure fsinfo.fs_addr is initialized before creating the message.
* [svn-r18917] Description:Quincey Koziol2010-05-2732-1404/+1126
| | | | | | | | | | | | | | | | | | | | | | | | Bring r18911 (plus some adaptions to match the code on the trunk) from the metadata journaling "merging" branch to the trunk: More general changes to align trunk with eventual changes from metadata journaling branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18915] Description:Quincey Koziol2010-05-272-24/+28
| | | | | | | | Clean up a couple of compiler warnings (in Windows). Tested on: Mac OS X/32 10.6.3 (amazon) w/debug (too minor to require h5committest)
* [svn-r18914] Added fortran library to list of library links.Allen Byrne2010-05-271-9/+9
| | | | Tested: Windows, local linux
* [svn-r18908] Corrected name of cstub libraries (needed to be lowercase)Allen Byrne2010-05-261-5/+5
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* [svn-r18906] Updated with new name of CMake.txtAllen Byrne2010-05-261-1/+1
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