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* [svn-r26507] Merge r26437 from autotools_rework branch.Jerome Soumagne2015-03-201-42/+0
| | | | | | Remove DYNAMIC_DIRS variable from configure.ac. Does not seem to be used anymore.
* [svn-r26506] Merge r26436 from autotools_rework branch.Jerome Soumagne2015-03-201-8/+0
| | | | Remove GNU make check from configure.ac
* [svn-r26505] Merge r26435 from autotools_rework branch.Jerome Soumagne2015-03-2010-283/+8
| | | | | | | Remove DEFAULT_LIBS from configure.ac and irix6.x config file which was using it. Remove references to IRIX/irix* platform.
* [svn-r26504] Merge r26434 from autotools_rework branch.Jerome Soumagne2015-03-201-1/+1
| | | | Fix heading info in configure.ac
* [svn-r26497] minor corrections noticed in 1.8 should be in trunk as wellAllen Byrne2015-03-204-8/+5
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* [svn-r26495] Description:Quincey Koziol2015-03-1910-221/+6
| | | | | | | | | | Bring r26258 from the autotools_rework branch to the trunk - remove the LDOUBLE_TO_INTEGER_WORKS macro/define, which was addressing issues with SGI systems that are no longer supported. Tested on: Linux 2.6.x (jam) w/serial & parallel Daily tested on branch for >2 weeks
* [svn-r26491] Description:Quincey Koziol2015-03-197-76/+7
| | | | | | | | | | Bring r26257 from autotools_rework branch back to the trunk - removes the LDOUBLE_TO_INTEGER_ACCURATE macro/define, which was addressing problems with SGI systems and is no longer supported. Tested on: Linux 2.6.x/32 (jam) w/serial & parallel Daily tested on branch for >2 weeks.
* [svn-r26490] Remove unused definesAllen Byrne2015-03-191-4/+0
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* [svn-r26488] Updated developers notes due to the removal of COMMON and ↵Scot Breitenfeld2015-03-191-2/+8
| | | | | | EQUIVALANCE and how everything is now put together. Not tested, comments only.
* [svn-r26481] Removed compiler warnings. HDF5-239Scot Breitenfeld2015-03-1917-233/+195
| | | | Tested: h5committest.
* [svn-r26480] Correct find package var nameAllen Byrne2015-03-191-1/+1
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* [svn-r26479] Fix for: HDFFV-9162Scot Breitenfeld2015-03-1914-961/+963
| | | | | | | | h5pget_class_f should return hid_t for classtype Also removed all left over C comment artifacts /* and */ in the Fortran comments. Tested: h5committest
* [svn-r26477] Removed COMMON and EQUIVALENCE usage from Fortran Source. Scot Breitenfeld2015-03-196-729/+850
| | | | | | | | | Also removed disabling shared when building Fortran on the Mac. These fixes should fix all the building shared with Fortran problems. HDF5-247 Also fixes array bounds starting from zero in H5Pff.f90 routines. Tested: h5committest
* [svn-r26475] packaging cleanup and defaultsAllen Byrne2015-03-181-42/+43
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* [svn-r26472] Remove duplicate src dirAllen Byrne2015-03-181-4/+0
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* [svn-r26465] Merge back from DB branch; cmake defaults and compressed examplesAllen Byrne2015-03-174-35/+48
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* [svn-r26463] static builds do not have dlls needed for the pathAllen Byrne2015-03-171-2/+3
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* [svn-r26462] Description:Binh-Minh Ribler2015-03-161-1/+1
| | | | | | Fixed typo that caused failure on Windows. Platforms tested: Linux/32 2.6 (jam)
* [svn-r26459] Snapshot version 1.9 release 215HDF Tester2015-03-1512-23/+23
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* [svn-r26458] Purpose: Fix warnings HDFFV-8658Binh-Minh Ribler2015-03-157-90/+106
| | | | | | | | | Description: Fixed many type conversion warnings and unused variables. Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r26457] Purpose: Fix warnings HDFFV-8658Binh-Minh Ribler2015-03-1511-31/+104
| | | | | | | | | | | | | | | | | | | | | | | | Description: The following two constructors of classes: AbstractDs, IdComponent, H5Location, and H5Object are no longer appropriate after the data member "id" had been moved from IdComponent to the sub-classes. The copy constructors are noop and will be generated by the compilers if needed so they can be removed in 1.8.15 without effecting applications. The other constructors will be removed from 1.10 release, and then from 1.8 if their removal does not raise any problems in at least two 1.10 releases. <Classname>(const hid_t h5_id); <Classname>(const <Classname>& original); Deprecation warnings are added to each of these classes. The other classes are changed to call the default constructor instead of one of the constructors above. Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r26456] Purpose: Fix warnings HDFFV-8658Binh-Minh Ribler2015-03-152-9/+11
| | | | | | | | | | Description: Fixed base classes that were in wrong order on the prototype lines and some misc. warnings. Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r26455] Purpose: Fix warnings HDFFV-8658Binh-Minh Ribler2015-03-151-24/+24
| | | | | | | | | | Description: Parameter had the same name as the class' member's. Replaced parameter with a different name. Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r26454] Purpose: Fix warnings HDFFV-8658Binh-Minh Ribler2015-03-152-9/+9
| | | | | | | | | | | Description: Missing initializing one of the base classes in multiple inheritance. Added CommonFG() to constructors' prototype. Platforms tested: Linux/64 (platypus) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r26452] Fixed formatting of copyright.Scot Breitenfeld2015-03-132-24/+24
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* [svn-r26438] Fixed some double promotion warnings from gcc 4.9.2. Most were inDana Robinson2015-03-1111-46/+46
| | | | | | format strings. Tested on: h5committest
* [svn-r26428] Merge of r26424 from the autotools_rework branch.Dana Robinson2015-03-111-5/+7
| | | | | | Made the chkmanifest script a little more sh-friendly. Tested: Manually on jam by modifying svn-controlled files
* [svn-r26427] Revert of r26426Dana Robinson2015-03-113-30/+27
| | | | | The repository wasn't clean when I made some changes so untested code was committed.
* [svn-r26426] Merge of r26424 from the autotools_rework branch.Dana Robinson2015-03-113-27/+30
| | | | | | Made the chkmanifest script a little more sh-friendly. Tested: Manually on jam by modifying svn-controlled files
* [svn-r26417] Removed compiler warnings from HL. HDF5-237Scot Breitenfeld2015-03-1024-1287/+1198
| | | | Tested: h5committest
* [svn-r26415] Fix script modeAllen Byrne2015-03-101-10/+11
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* [svn-r26412] Merge of r26081-2, 26226, and 26399 from the autotools rework ↵Dana Robinson2015-03-102-110/+154
| | | | | | | | | | | | | | | | | | | | | | | | branch. Various tweaks for autotools thread-safety and Pthreads support. - Moved the check for pthread_attr_setscope() into the thread-safe checks section. Documented its necessity and added a cross-compiling option and helpful comment. - Moved the high-level library checks up to the same place where Fortran and C++ are checked. This will make it easier to handle threadsafe/high-level combinations later. - Also changed the default of --enable-pthread to 'check', which is the same as the old 'yes' behavior where we just check the standard locations. 'yes' and 'no' are still accepted, though 'no' will currently produce an error since the autotools only support Pthreads. Fixes: HDFFV-9087 Tested on: h5committest jam (w/ threadsafe)
* [svn-r26408] Missed an H5_HAVE_FILTER_SHUFFLE line.Dana Robinson2015-03-091-1/+1
| | | | | | Part of: HDFFV-9086 Tested on: jam (minor change)
* [svn-r26405] Removed compiler warnings, hl/examples:Scot Breitenfeld2015-03-0917-86/+62
| | | | | | HDF5-237 tested: h5committest
* [svn-r26403] changes to comments and test should use unsigned var.Allen Byrne2015-03-092-3/+3
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* [svn-r26401] Fixed warnings in the C stubs for Fortran wrappers. See ↵Elena Pourmal2015-03-094-20/+53
| | | | | | Crucible review HDF5-238. Tested on platypus with gcc/gfortran 4.9.2, jam and emu with the default compilers.
* [svn-r26392] Reinstates r26327-8, which had been reverted due to failures onDana Robinson2015-03-096-61/+237
| | | | | | | | | | | | | | Solaris and OS X. Added public API functions that expose the C library's memory allocator for use in filter functions that need to allocate or resize buffers. Intended for use with filter plugins, particularly on Windows, where C runtime (CRT) issues can cause problems. Fixes: HDFFV-9100 Tested on: h5committest + OS X (quail) + Solaris (emu)
* [svn-r26389] Revision 26387 failed with configure option ↵Larry Knox2015-03-081-1/+1
| | | | | | | | --with-default-api-version=v16. Changed H5Dcreate() to H5Dcreate2 in test/trefer.c line 633. Tested with h5committest and with --with-default-api-version=v16 on platypus.
* [svn-r26387] warning fixes from Feb27.Mohamad Chaarawi2015-03-068-24/+32
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* [svn-r26382] Merge r26289 from autotools_rework branch to trunk:Mike McGreevy2015-03-062-34/+0
| | | | | | | | | | | | | | | | | | | Purpose: Fix HDFFV-9124 - Remove old libtool post-processing Description:   This revision removes some post-processing of the generated libtool script, which was added back in 2003 (see svn revisions 6285 and 6293) to address a deficiency in which the script failed to set the '$wl' variable for icc and pgcc compilers. Libtool has since fixed the issue, and the post-processing we've been running has essentially been a no-op for years, so it's safe for us to remove the post-processing snippet. Tested: Jam using pgcc and icc compilers.
* [svn-r26380] Recapture updated error files for h5dump testsAllen Byrne2015-03-063-105/+21
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* [svn-r26375] Print number of times sigill_handler is called in H5detect.Jerome Soumagne2015-03-051-6/+11
| | | | Part of: HDFFV-8857
* [svn-r26374] Add CMake conversion test for H5_LONG_TO_LDOUBLE_SPECIAL andJerome Soumagne2015-03-052-8/+120
| | | | | | | | H5_LDOUBLE_TO_LONG_SPECIAL (imported from configure.ac). Fixes: HDFFV-8936 Tested on: ostrich
* [svn-r26373] Fix for HDFFV-7959:Scot Breitenfeld2015-03-052-2/+86
| | | | | | H5Rdereference should check for default (HADDR_UNDEF) value and not continue processing and return so that ret value can be checked and handled properly Tested: jam (gnu)
* [svn-r26367] HDFFV-8520: Add plugin control APIs.Allen Byrne2015-03-051-0/+53
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* [svn-r26366] Update windows wix cpack process.Allen Byrne2015-03-051-0/+11
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* [svn-r26365] HDFFV-8520: Add plugin control APIs.Allen Byrne2015-03-0510-60/+165
| | | | | | Update windows WiX packaging. h5committested
* [svn-r26363] Partial revert of r26347.Dana Robinson2015-03-043-5/+5
| | | | | | | | | | | | | | Since off_t is exposed by the C API, the large file definitions MUST be exposed so that client code matches the library. These definitions have been switched back to AM_CPPFLAGS, which is exported to h5cc, etc. The POSIX and GNU definitions changes from r26347 have been left as using H5_CPPFLAGS, which is not sent to h5cc as we don't want to inflict our needs on external users. Fixes: HDFFV-9152 Tested on: h5committest
* [svn-r26351] Adds warning prevention pragmas, etc. to flex- and ↵Dana Robinson2015-03-043-0/+69
| | | | | | | | bison-generated code. Fixes: HDFFV-9149 Tested on: jam w/ gcc 4.1 and koala w/ gcc 4.9
* [svn-r26348] Updates bin/chkmanifest to correctly handle the seven ↵Dana Robinson2015-03-031-3/+6
| | | | | | | | | | | | | Subversion status columns that are output by svn stat. Previously, the script assumed that they would all be blank for newly- added files. This is not always true when merging. Part of: HDFFV-8895 Tested on: jam (bin/chkmanifest only)
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