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* [svn-r19153] Description:Quincey Koziol2010-07-298-343/+278
| | | | | | | | | | | | | | | | | | | | | | | | Bring changes on Coverity branch back to trunk: r19040: Fixed coverity #440 - NULL check after dereference. We moved the NULL check up into the IF block and changed it to assertion. r19041: Maintenance: Addressed Coverity issues 441 and 449 by initializing proper variables r19042: In function H5O_chunk_protect (H5Ochunk.c): - Initialize H5O_chunk_proxy_t pointers chk_proxy and ret_value. - Free chk_proxy on error. r19043: Addressed coverity issues 442 - 448 by initializing pointers to NULL. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug & production (Too minor to require h5committest)
* [svn-r19150] Correction from the previous checkin for H5Oattribute.c. ↵Raymond Lu2010-07-291-3/+8
| | | | | | | | | | Because the attribute structure i is shared now. The only situation that requires copying the data is when the metadata cache evicts and reloads this attribute. The attribute structure will be different in that situation. Tested on jam.
* [svn-r19148] Maintenance: Removed misleading information about the ↵Elena Pourmal2010-07-291-16/+6
| | | | | | | HDF4-to-HDF5 tools. The tools became a part of the h4h5tools distribution long time ago, but the INSTALL file was not updated in the development branch and slipped into 1.8 releases and current trunk.
* [svn-r19146] Purpose: Fix bug in direct IO driverNeil Fortner2010-07-282-80/+156
| | | | | | | | | | | Description: In certain circumstances, the direct I/O driver did not perform correctly when data was unaligned. The driver has been patched to fix this. Also added some potential performance improvements for the unaligned case, and strengthened the test for whether the data needs to be aligned. Tested: cobalt
* [svn-r19144] Update for bug fix #1956.Raymond Lu2010-07-281-0/+3
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* [svn-r19142] I added H5Itest.c.Raymond Lu2010-07-281-1/+1
| | | | Not tested yet.
* [svn-r19140] In line 861, there's no need to allocate data buffer or copy ↵Raymond Lu2010-07-281-10/+3
| | | | | | | | the data because the attribute structure is shared now. Only do an assertion check, instead. Tested the same change for 1.8.5 on jam - simple change.
* [svn-r19135] Added new file to windows project files.Allen Byrne2010-07-283-4/+13
| | | | Added new file to src/CMakeLists.txt
* [svn-r19133] Description:Quincey Koziol2010-07-2812-157/+339
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Correct traversal of user-defined links (including external links) to retain path information of object, allowing H5Iget_name() queries to work quickly (without searching entire destination file). This required some refactoring and addition of a mechanism to detect if a "fast" query was performed (for the tests). Minor code cleanups, etc. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r19131] Description:Quincey Koziol2010-07-271-0/+4
| | | | | | | | Reduce compiler optimizations for v10.6, to work around bug with static constant char *'s. Tested on: Linux/32 2.4 (jam) w/PGI
* [svn-r19130] Description:Quincey Koziol2010-07-261-2/+2
| | | | | | | Correct another inadvertant use of macro instead of versioned API name. Tested on: Eyeballed only, too minor to require h5committest
* [svn-r19127] Description:Quincey Koziol2010-07-231-1/+1
| | | | | | | | Change use of API wrapper to using versioned API routine (i.e. H5Eprint -> H5Eprint2) Tested on: None, eyeballed only, too simple
* [svn-r19124] Description:Quincey Koziol2010-07-221-5/+20
| | | | | | | | | | | | | | | | | | Add some error checking to the process of creating superblock extension. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
* [svn-r19120] Description:Quincey Koziol2010-07-221-1/+1
| | | | | | | Bump the testing timer value from 30 to 60 minutes. Tested on: None, just eyeballed, too simple to require test
* [svn-r19118] Description:Quincey Koziol2010-07-211-1/+1
| | | | | | | | Fix return value from FAIL to NULL. Tested on: Eyeballed only (too trivial to test)
* [svn-r19116] Corrected positioning of cmake variables in definition order.Allen Byrne2010-07-211-41/+41
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* [svn-r19114] Description:Quincey Koziol2010-07-2032-150/+56
| | | | | | | | | Rename H5AC_set() to H5AC_insert_entry() Get rid of H5C_set_skip_flags() & related flags Tested on: Mac OS X/32 10.6.4 (amazon) w/debug, production & parallel (too simple to require h5committest)
* [svn-r19108] Corrected cmake location of ConfigureChecks.cmakeAllen Byrne2010-07-201-1/+1
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* [svn-r19107] Move Resources folder to config/cmakeAllen Byrne2010-07-2023-35/+35
| | | | Tested: Local Linux
* [svn-r19099] Description:Quincey Koziol2010-07-193-4/+4
| | | | | | | | | | Fix const pointer issues for projection construction routine and also bump time before alarm kicks in to terminate a test from 20 minutes to 30 minutes, to give the PGI compiler tests w/debugging enabled a chance to finish. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug Linux/32 2.6.18 (jam) w/PGI & debug
* [svn-r19096] Description:Quincey Koziol2010-07-1912-1440/+4844
| | | | | | | | | | | | | | | | | | | | | Bring "round robin" metadata write strategy code from 'round_robin' branch to the trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r19092] Description:Quincey Koziol2010-07-1920-1106/+13125
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring "shape same" changes from LBL branch to trunk. These changes allow shapes that are the same, but projected into dataspaces with different ranks to be detected correctly, and also contains code to project a dataspace into greater/lesser number of dimensions, so the I/O can proceed in a faster way. These changes also contain several bug fixes and _lots_ of code cleanups to the MPI datatype creation code. Many other misc. code cleanup are included as well... Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r19086] Snapshot version 1.9 release 74HDF Tester2010-07-1814-28/+28
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* [svn-r19083] Add gen_sizes_lheap to CMakeLists.txt.Neil Fortner2010-07-161-0/+1
| | | | Tested: none
* [svn-r19076] Purpose: Fix bug 1951Neil Fortner2010-07-169-16/+150
| | | | | | | | | | | | Description: A bug introduced in 1.8.5 causes local heap data blocks to be mis-aligned when sizeof_offsets + 2*sizeof_lengths is not a multiple of 8. In this case, the address of the data block as stored in the heap prefix is aligned but the actual data block is not. This causes files created with these sizes to be corrupted, and prevents uncorrupted files with these sizes to be unreadable. Modified local heap code to account for alignment. Tested: jam, amani, linew (h5committest)
* [svn-r19074] Added check for no encoding to determine result for testAllen Byrne2010-07-151-2/+7
| | | | Tested: Windows
* [svn-r19072] Bug 1921: change to use mpiexec.Albert Cheng2010-07-141-1/+1
| | | | | | Changed the mpirun to mpiexec in the comment line. Tested: jam (pp). No h5committest since this applied in parallel only.
* [svn-r19070] Document update: ID 1921 change mpirun to mpiexecAlbert Cheng2010-07-142-15/+78
| | | | | | Changed the use of mpirun to mpiexec which is the MPI-2 official standard. INSTALL_parallel: Also bring in previous update of Red Storm support.
* [svn-r19068] Bug fix: ID 1921 change mpirun to mpiexecAlbert Cheng2010-07-142-134/+27
| | | | | | | | | | | Removed the recognition of parallel compilers of LAM (hcc) and ChMPIon (cmpicc) since we have no access to these two MPI implementations and decided not to support them any more. Test: Jam using parallel tests: 1. use CC=mpicc and confirmed it is recognized as a parallel compiler; 2. use CC=hcc and confirmed it is NOT recognized as a parallel compiler any more.
* [svn-r19064] Snapshot version 1.9 release 73HDF Tester2010-07-1114-29/+29
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* [svn-r19059] Brought changes from hdf5_1_8 to add version information for ↵Larry Knox2010-07-0964-89/+1248
| | | | | | fortran and c++ compilers in libhdf5.settings file and configure output (r18836), to install examples as part of make install (r18680), and to provide scripts to compile and run the examples after they are installed (r18817). Tested with new/h5committest on amani, heiwa, and jam.
* [svn-r19057] Purpose: Jonathan Kim2010-07-081-0/+4
| | | | | | | | | | add reference file entries for the new test expected output files Description: This is dependent to r19051. Tested: Windows (cmake)
* [svn-r19056] Added code to retrieve version info from H5public.h; corrected ↵Allen Byrne2010-07-083-6/+14
| | | | a typo in a configure check and a macro
* [svn-r19052] Add thlink-1.ls entry back which was mistakenly removed from ↵Jonathan Kim2010-07-071-0/+1
| | | | previous checkin.
* [svn-r19051] Purpose:Jonathan Kim2010-07-0717-194/+397
| | | | | | | | | | | Add --no-dangling-links option to h5ls. Description: Related to "Bug 1830 - Following an dangling external link in h5ls should set non-zero return code." If --no-dangling-links option is specified and any dangling link is found, return exit code 1 (error). Tested: jam, amani and heiwa
* [svn-r19047] Snapshot version 1.9 release 72HDF Tester2010-07-0414-29/+29
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* [svn-r19037] Added executable Linker Flag for MSVC static builds: ↵Allen Byrne2010-06-2925-43/+580
| | | | | | | | /NODEFAULTLIB:MSVCRT Added VERSION vars for inclusion into auto snapshot version update script Tested windows
* [svn-r19034] Purpose:Jonathan Kim2010-06-282-0/+36
| | | | | | | | | | Change h5ls not to manipulate special characters in object name or attribute name for smart display. Description: Related to "But1784 h5ls has input and output issues with links that have '\' characters in them." Tested: jam, amani and linew
* [svn-r19032] Correct use of variable in windows dll builds by changing ↵Allen Byrne2010-06-282-2/+2
| | | | | | qualifier from extern to H5_DLLVAR. Turned off default packed bits setting as feature is not available for trunk
* [svn-r19031] Snapshot version 1.9 release 71HDF Tester2010-06-2814-29/+29
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* [svn-r19028] added new cmake files for testingAllen Byrne2010-06-221-0/+2
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* [svn-r19027] Add testing files to cmake resources.Allen Byrne2010-06-223-0/+47
| | | | | | Added code coverage option to cmake. Tested: local linux
* [svn-r19025] Correct defines for zlib and szipAllen Byrne2010-06-211-10/+9
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* [svn-r19022] Snapshot version 1.9 release 70HDF Tester2010-06-2015-51/+37
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* [svn-r19019] Enhancements:Albert Cheng2010-06-181-12/+9
| | | | | | | | | | | | | | | | | Cleaned up the code a bit by: 1. It used to that -xxx options must be at the beginning such that "buildhdf5 --disable-shared -config" was an error. Now -xxx options can appear anywhere in the command options. 2. Eliminate the need of variables $CONFIG_CXX, $CONFIG_FORTRAN, $CONFIG_PARALLEL by appending their values to $CONFIG_OP directly. 3. Also append $WITH_SZLIB to $CONFIG_OP when it is defined, not later. 4. Call CONFIG directly instead of setting up $CONFIGURE. 5. Removed the last TIMESTAMP since "trap 0" will call QUIT which calls TIMESTAMP already. This eliminated the extra timestamp when it finishes normal. tested: Tested by hand since h5committest does not really test this command.
* [svn-r19017] Purpose:Mike McGreevy2010-06-172-4/+5
| | | | | | | | | | | | | | | | Minor code cleanup Description: Add missing declaration of H5AC_ignore_tags() to H5ACprivate.h Clean up some warnings in cache_tagging.c test file Tested: jam, gandalf
* [svn-r19015] Description:Quincey Koziol2010-06-172-16/+15
| | | | | | | | | | Remove unused 'ATYPE' parameter from H5T_CONV() macro Remove unused 'result' variable from H5AC_set() Tested on: Mac OS X/32 10.6.4 (amazon) w/debug & production (too minor to require h5committest)
* [svn-r19010] Purpose:Mike McGreevy2010-06-163-9/+5
| | | | | | | | | | | | | | Clean up code. Description: Reorganize to remove mixed declarations and code (which should satisfy windows compile). Tested: jam, blue print, gandalf Windows 7 w/ VS Express 2008 (on VMware)
* [svn-r19008] Purpose:Mike McGreevy2010-06-162-16/+16
| | | | | | | | | | | | | | | | | Fix some tagging issues. Description: - changed H5Gcreate to H5Gcreate2 in the cache_tagging.c test file to work properly with 1.6 API default mapping turned on. - Added FUNC_ENTER/LEAVE_*TAG macros to the H5G_stab_valid function. Tested: gandalf, jam, amani (w/ production mode, 1.6 API mapping)
* [svn-r19006] Purpose: Improve performance of the the chunk cacheNeil Fortner2010-06-154-225/+185
| | | | | | | | | | Description: Previously, the chunk cache would, when looking for a chunk, alwaylook for the chunk in the b-tree before checking the cache. Reworked the functions that look up chunks to always check the cache first and avoid the b-tree lookup if the chunk is in cache. Tested: jam, linew, amani (h5committest)
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