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* Merge remote-tracking branch 'origin/develop' into monotonic_timerQuincey Koziol2020-06-261843-181238/+348913
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| * Merge pull request #2654 in HDFFV/hdf5 from bmr_HDFFV-10591 to developBinh-Minh Ribler2020-06-224-12/+41
| |\ | | | | | | | | | | | | | | | | | | | | | Fixed HDFFV-10591 * commit '7d58d115079d286a566207c529e59bbccc952b03': Added note for HDFFV-10591. Fix HDFFV-10591
| | * Added note for HDFFV-10591.Binh-Minh Ribler2020-06-191-0/+12
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| | * Fix HDFFV-10591Binh-Minh Ribler2020-06-193-12/+29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: h52gif produced a segfault when a buffer overflow occurred because the data size was corrupted and became very large. This commit added a check on the data size against the buffer size to prevent the segfault. It also added error reporting to h52gif to display an error message instead of silently exiting when the failure occurred. Platforms tested: Linux/64 (jelly) SunOS 5.11 (emu)
| * | Merge pull request #2648 in HDFFV/hdf5 from opt_h5open_overhead to developQuincey Koziol2020-06-182-5/+32
| |\ \ | | |/ | |/| | | | | | | * commit '49fad72f3e003e1e2d7d72edd9b7ec47c802d9f1': Reduce overhead for H5open, which is involved in the public symbols like H5T_NATIVE_INT, etc.
| | * Reduce overhead for H5open, which is involved in the public symbols like ↵Quincey Koziol2020-06-162-5/+32
| |/ | | | | | | H5T_NATIVE_INT, etc.
| * Merge pull request #2610 in HDFFV/hdf5 from ↵David Young2020-06-166-12/+12
| |\ | | | | | | | | | | | | | | | | | | ~DYOUNG/werror:hdffv-11060-examples-destdir to develop * commit '4cebd8aa6c965fe2e5dde6dbff36b2be3ca58bf1': Make examples installation respect DESTDIR. Fixes HDFFV-11060.
| | * Make examples installation respect DESTDIR. FixesDavid Young2020-05-266-12/+12
| | | | | | | | | | | | HDFFV-11060.
| * | Merge pull request #2615 in HDFFV/hdf5 from ↵Jake Smith2020-06-152-1/+5
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | ~JAKE.SMITH/hdf5:bugfix/splitter_valgrind_patch to develop * commit '6462c67b6578e48c1ef6d847be59c0b5e3598a50': Patch a few holes in the Splitter VFD implementation.
| | * | Patch a few holes in the Splitter VFD implementation.Jacob Smith2020-05-292-1/+5
| | | | | | | | | | | | | | | | | | | | * Missing logfile close on driver-open failure. * Initialize empty string in test/vfd (logfile path in W/O compat check).
| * | | Merge pull request #2646 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-06-122-28/+6
| |\ \ \ | | | | | | | | | | | | | | | | | | | | * commit '998c6470d78e14228695419c3b514c35ecf3d69e': Remove unnecessary version conditions for Clang compilers.
| | * | | Remove unnecessary version conditions for Clang compilers.Larry Knox2020-06-122-28/+6
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| * | | Merge pull request #2643 in HDFFV/hdf5 from ↵Vailin Choi2020-06-113-6/+23
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-10961-h5clear-usage-statement-give to develop * commit '01b632c69ca1c97c2b0e1aaeeab1dd2362b580a6': Fix for HDFFV-10961: Couple changes to the tests' usage output files for h5clear. Fix for HDFFV-10961: add description to usage for --increment option.
| | * | | Fix for HDFFV-10961:vchoi2020-06-112-4/+16
| | | | | | | | | | | | | | | | | | | | Couple changes to the tests' usage output files for h5clear.
| | * | | Fix for HDFFV-10961: add description to usage for --increment option.vchoi2020-06-111-2/+7
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| * | | Merge pull request #2636 in HDFFV/hdf5 from ↵Larry Knox2020-06-111-4/+126
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~LRKNOX/hdf5_lrk:HDFFV-11000-update-testh5cc.sh.in-for-version to develop * commit '5c0bd670d6e9919c463fbc05de99e2ba55b0761e': Add tests for all version to H5_NO_DEPRECATED_SYMBOLS section and to section for current version, with and without default API version flags. HDFFV-11000: update-testh5cc.sh.in to test sample versioned functions in HDF5 1.10, 1.12 and develop.
| | * | | Add tests for all version to H5_NO_DEPRECATED_SYMBOLS sectionLarry Knox2020-06-101-2/+13
| | | | | | | | | | | | | | | | | | | | | | | | | and to section for current version, with and without default API version flags.
| | * | | HDFFV-11000: update-testh5cc.sh.in to test sample versioned functionsLarry Knox2020-06-101-3/+114
| | | | | | | | | | | | | | | | | | | | in HDF5 1.10, 1.12 and develop.
| * | | | Merge pull request #2639 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-06-102-1/+3
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'a33667faf226f5d8c9633bf537893e8fce1bf1f6': Add c++ to --enable-sanitize-checks option.
| | * \ \ \ Merge branch 'develop' of ↵buildbot2020-06-104-35/+60
| | |\ \ \ \ | | |/ / / / | |/| | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop
| * | | | | Merge pull request #2633 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-06-106-70/+44
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '20eab963899841c9a003baebead8e3bc07d9e127': Remove duplicate entries in MANIFEST. Make changes to CMake CompilerFlags.cmake files so extra flags are loaded for non-GNU compilers. Update new clang files to not pick up clang as vendor for pgCC. Add new files to MANIFEST Temporary demotion of 2 -Werror warning flags that fail on macos 10.12 Remove Production flag unknown to Apple clang.
| | * | | | | Remove duplicate entries in MANIFEST.Larry Knox2020-06-101-2/+0
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| | * | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Larry Knox2020-06-104-33/+60
| | |\ \ \ \ \ | | |/ / / / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '7f0c0134166275c0745e0e65f9d81b4de72d5ce2': Fix MANIFEST Remember the info for the last ID looked up for a given ID type. Eliminate allocating file & memory offset & length arrays when performing I/O on a single element. Remove redundant metadata cache tagging from some low-level internal chunk functions. The metadata cache tagging has already been done by routines further up the call stack.
| * | | | | | Merge pull request #2637 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-06-101-0/+2
| |\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '1e038bf49588d163762965c7a15fb76e3a689ef2': Fix MANIFEST
| | * | | | | | Fix MANIFESTDana Robinson2020-06-101-0/+2
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| * | | | | | | Merge pull request #2635 in HDFFV/hdf5 from cache_last_id_info to developQuincey Koziol2020-06-101-2/+22
| |\ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '0ef32f07fb9e8fb6063f3318425506047454d6f4': Remember the info for the last ID looked up for a given ID type.
| | * | | | | | | Remember the info for the last ID looked up for a given ID type.Quincey Koziol2020-06-091-2/+22
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| * | | | | | | Merge pull request #2634 in HDFFV/hdf5 from opt_single_selection_io to developQuincey Koziol2020-06-101-27/+32
| |\ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'a8a4e9f27b67ae2e22970e42859225adcc2e5cbb': Eliminate allocating file & memory offset & length arrays when performing I/O on a single element.
| | * | | | | | | Eliminate allocating file & memory offset & length arrays when performing ↵Quincey Koziol2020-06-091-27/+32
| | |/ / / / / / | | | | | | | | | | | | | | | | | | | | | | | | I/O on a single element.
| * | | | | | | Merge pull request #2632 in HDFFV/hdf5 from remove_redundant_chunk_tags to ↵Quincey Koziol2020-06-101-4/+4
| |\ \ \ \ \ \ \ | | |/ / / / / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '9e8899c3b47a2041242dc4539ca8b1c5e151a371': Remove redundant metadata cache tagging from some low-level internal chunk functions. The metadata cache tagging has already been done by routines further up the call stack.
| | * | | | | | Remove redundant metadata cache tagging from some low-level internal chunk ↵Quincey Koziol2020-06-091-4/+4
| |/ / / / / / | | | | | | | | | | | | | | | | | | | | | functions. The metadata cache tagging has already been done by routines further up the call stack.
| | | * | | | Add c++ to --enable-sanitize-checks option.buildbot2020-06-102-1/+3
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| | * | | | Make changes to CMake CompilerFlags.cmake files so extra flags areLarry Knox2020-06-104-60/+35
| | | | | | | | | | | | | | | | | | | | | | | | loaded for non-GNU compilers.
| | * | | | Update new clang files to not pick up clang as vendor for pgCC.Larry Knox2020-06-094-18/+19
| |/ / / / | | | | | | | | | | | | | | | | | | | | | | | | | Add new files to MANIFEST Temporary demotion of 2 -Werror warning flags that fail on macos 10.12 Remove Production flag unknown to Apple clang.
| * | | | Merge pull request #2631 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-06-081-7/+6
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'b942a4d8a3e27317cac50ce37ff5302d477664d8': Clean up code to get clang version in config/linux-gnulibc1
| | * | | | Clean up code to get clang version in config/linux-gnulibc1Larry Knox2020-06-081-7/+6
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| * | | | Merge pull request #2623 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-06-087-4/+511
| |\ \ \ \ | | |/ / / | | | | | | | | | | | | | | | | | | | | * commit 'c7626f79fdee4eee13925e240ef41e61f3367eab': Add flags from config/clang-warnings/*general files to H5 C and CXX flags for all versions of Clang and Clang++ compilers. Switched from cut to awk in testcheck_version.sh.in to avoid dependence on tab vs. " " in version definitions in H5public.h. Add files for adding warning flags for clang compilers in autotools configure.
| | * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Larry Knox2020-06-074-42/+50
| | |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'aa338c3a87a4544ccb164832422e3e2462a57b88': Detect when there's the same-shaped selection of a single block of elements on both selections, but with different selection types (i.e. one selection defined as an 'all' type and the other as a hyperslab or point type), without falling into the generic selection iteration case. Normalization of H5T.c with 1.10. Normalization of H5D.c with 1.10.
| | * | | | Add flags from config/clang-warnings/*general files to H5 C and CXX flags ↵Larry Knox2020-06-067-90/+22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | for all versions of Clang and Clang++ compilers. Switched from cut to awk in testcheck_version.sh.in to avoid dependence on tab vs. " " in version definitions in H5public.h.
| | * | | | Add files for adding warning flags for clang compilers in autotoolsLarry Knox2020-06-028-1/+576
| | | | | | | | | | | | | | | | | | | | | | | | configure.
| * | | | | Merge pull request #2630 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-06-086-46/+38
| |\ \ \ \ \ | | |_|/ / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '87695c999ad7ea348ee6dc03b46b0bd345f7d7df': Minor normalizations with HDF5 1.10.
| | * | | | Minor normalizations with HDF5 1.10.Dana Robinson2020-06-076-46/+38
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| * | | | | Merge pull request #2626 in HDFFV/hdf5 from tiny_shape_same_opt to developQuincey Koziol2020-06-062-7/+16
| |\ \ \ \ \ | | |/ / / / | |/| | | | | | | | | | | | | | | | * commit 'de54cff50c419751e0080b6a732facac43f87ba6': Detect when there's the same-shaped selection of a single block of elements on both selections, but with different selection types (i.e. one selection defined as an 'all' type and the other as a hyperslab or point type), without falling into the generic selection iteration case.
| | * | | | Detect when there's the same-shaped selection of a single block of elements onQuincey Koziol2020-06-052-7/+16
| |/ / / / | | | | | | | | | | | | | | | | | | | | | | | | | both selections, but with different selection types (i.e. one selection defined as an 'all' type and the other as a hyperslab or point type), without falling into the generic selection iteration case.
| * | | | Merge pull request #2625 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-06-042-35/+34
| |\ \ \ \ | | |/ / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit 'e22d126639e139518e4b5f1ac35a008ec429f698': Normalization of H5T.c with 1.10. Normalization of H5D.c with 1.10.
| | * | | Normalization of H5T.c with 1.10.Dana Robinson2020-06-041-24/+24
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| | * | | Normalization of H5D.c with 1.10.Dana Robinson2020-06-041-11/+10
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| * | | | Merge pull request #2622 in HDFFV/hdf5 from fix_h5doappend to developQuincey Koziol2020-06-021-14/+3
| |\ \ \ \ | | |/ / / | |/| | | | | | | | | | | | | * commit 'c6b836527f31a731e022083ebe1b9b18f8cdd29a': Eliminate unneccesary creation of DXPL
| | * | | Eliminate unneccesary creation of DXPLQuincey Koziol2020-06-021-14/+3
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| * | | Merge pull request #2621 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-06-024-20/+23
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit 'cc15d1039af86deb77c9dc9188412ce361599b17': Normalizations with 1.10 branch.
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