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* [svn-r10171] Purpose:James Laird2005-03-092-31/+41
| | | | | | | | | | | | | | | | | | | Bug fix Description: The fortran compiler is named FC. If F9X environment variable is set, FC should hold the value in F9X. However, this was overwriting values written to FC by platform-specific config scripts. This caused copper to find the wrong fortran when building in parallel, and may have had other symptoms on other platforms. Solution: Assign $F9X to $FC at the beginning of configure, before platform-specific scripts are run. Do this assignment only if FC is empty. Platforms tested: copper, modi4 (parallel and serial w/c++), verbena. This change should only affect fortran build.
* [svn-r10170] Purpose:Leon Arber2005-03-094-57/+161
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fixes Description: Fixes for several bugs, including dumping of excess output to a temporary file, fix for printing hsize_t datatype, and the long awaited fix for intermixed output. Solution: Fix 1: Overflow file Previously, any output that a worker task made was buffered locally in memory, up to a point. Any output beyond the size of the buffer (used to be 10k) was discarded. Now, the memory buffer size has been changed to 1k and any output beyond this amount is sent a temporary file. This way, no output is lost and memory usage is kept under control. The temporary file is deleted as soon as a worker task finishes sending its contents to the manager. Fix 2: hsize_t printing Printing of the hsize_t datatype used to be handled by %Hu passed to HDfprintf. However, there is no corresponding HDvsnprintf that is able to print hsize_t types. These are now printed with the aid of H5_PRINTF_LL_WIDTH. Fix 3: Intermixed output fix Intermixed output would occur on some machines (although I haven't seen it happen for a while) due to the unpredictability of the underlying network and the speed at which various message would travel. This has been fixed by having all output send to the manager for printing. The worker tasks no longer print the output themselves upon receipt of a token, but instead send that data to the manager. Platforms tested: heping, eirene, tg-login (the only place that seems to still experience intermixed output every now and then) Misc. update:
* [svn-r10169] Purpose:Quincey Koziol2005-03-081-1/+2
| | | | | | | | | | | Bug fix Description: Correct minor array bounds read error of 0 bytes that purify found. Platforms tested: FreeBSD 4.11 (sleipnir) Solaris 2.9 (shanti)
* [svn-r10168] Purpose:Quincey Koziol2005-03-082-1/+262
| | | | | | | | | | | | Bug fix & new tests Description: Fix another couple of issues with record removal and add some more tests to make certain removals work correctly. Platforms tested: FreeBSD 4.11 (sleipnir) Solaris 2.9 (shanti)
* [svn-r10166] Purpose:Albert Cheng2005-03-081-1/+2
| | | | Updated with the removal GASS API.
* [svn-r10165] Purpose:Albert Cheng2005-03-081-6/+0
| | | | Updated the help page that install directory is no longer hardset.
* [svn-r10163] Purpose: New way to do conversion test from integers to ↵Raymond Lu2005-03-081-36/+64
| | | | | | | | | | | | | floating numbers. Description: This is the 2nd step of changing conversion test. This checkin is only for conversion from integer to floating number. The source buffer of integer is filled up in the same way described in the last checkin(revision 1.153). Platforms tested: fuss, sol, and heping - copper was down. Couldn't do h5committest.
* [svn-r10162] Purpose:Quincey Koziol2005-03-082-12/+905
| | | | | | | | | | | | | Bug fix & new tests Description: Fix several errors in record removel routines, which should now be feature complete for removing records at any location in the B-tree (further testing will verify this) Platforms tested: FreeBSD 4.11 (sleipnir) Solaris 2.9 (shanti)
* [svn-r10161] Purpose:Xiaowen Wu2005-03-081-30/+182
| | | | | | | | | | | | | | | | | | New feature. Description: The nbit filter does not support situations where datatype of string, time, enum, variable-length, bitfield, opaque, reference is a field of a compound datatype or array datatype. Solution: Modify the nbit filter to hanle such situations. The filter is a no-op to these dataytypes. Platforms tested: copper, heping. Misc. update:
* [svn-r10160] Purpose:James Laird2005-03-072-75/+60
| | | | | | | | | | | Forgot to run reconfigure Description: Forgot to run bin/reconfigure after removing my debug output from configure.in. Shame on me! Platforms tested: mir
* [svn-r10159] Purpose:Quincey Koziol2005-03-072-31/+249
| | | | | | | | | | | | Bug fix Description: Corrected errors in record removal code to handle removing records in higher nodes in the B-tree. Platforms tested: FreebSD 4.11 (sleipnir) Solaris 2.9 (shanti)
* [svn-r10158] Purpose:James Laird2005-03-0781-7314/+12537
| | | | | | | | | | | | | | | | | | | | | | Automake version upgrade Description: Upgraded automake version from 1.6.2 to 1.9.5. Changed bin/reconfigure script to use automake 1.9.5. Changed configure.in and Makefiles to use new FCFLAGS and FC variables instead of FFLAGS and F9X. Automake and configure should now do the lion's share of the work supporting Fortran 9X; macros in acsite.m4 are now mostly unused (will be cleaned later). Altered how configure handles pmake; now root-level Makefile.in is processed by bin/reconfigure to have a .MAKEFLAGS target, since automake no longer allows us to define unused variables. Configure now always checks for C++ compiler even if it is not used, since automake thinks this is the Right Thing To Do and will break otherwise. Platforms tested: Sol, copper, heping, mir, sleipnir, eirene, pommier, kelgia, modi4.
* [svn-r10156] Purpose:Quincey Koziol2005-03-052-19/+192
| | | | | | | | | | | Bug fix & new feature Description: Allow B-tree's height to be reduced when removing records. Platforms tested: FreeBSD 4.11 (sleipnir) Solaris 2.9 (shanti)
* [svn-r10155] Purpose:Quincey Koziol2005-03-051-10/+288
| | | | | | | | | | | | More tests Description: Add tests for removing records in the root of a level-1 B-tree and promoting and merging leaf nodes. Platforms tested: FreeBSD 4.11 (sleipnir) Solaris 2.9 (shanti)
* [svn-r10154] Purpose:Quincey Koziol2005-03-052-13/+288
| | | | | | | | | | | | | | Bug fix/new feature Description: Tweak the record promotion algorithm to get it working correctly when promoting and redistributing records. Added tests for that case. Platforms tested: FreeBSD 4.11 (sleipnir) Solaris 2.9 (shanti)
* [svn-r10153] Purpose:Quincey Koziol2005-03-057-2/+284
| | | | | | | | | | | | New feature Description: Allow records in internal nodes to be removed, not just records in leaf nodes. Platforms tested: FreeBSD 4.11 (sleipnir) Solaris 2.9 (shanti)
* [svn-r10152] Purpose:Quincey Koziol2005-03-052-58/+409
| | | | | | | | | | | | | | | | | | Bug fix & new feature Description: Fix error in 3-node redistribution when nodes are only moving into the middle node from the left & right nodes (which happens sometimes during record removals). Clean up internal insert & remove routines to remove lots of redundant checking. Added 3->2 node merge routine to handle more record removal cases. Platforms tested: FreeBSD 4.9 (sleipnir) Solaris 2.11 (shanti)
* [svn-r10151] Purpose:Quincey Koziol2005-03-042-7/+324
| | | | | | | | | | | New feature Description: Add code to handle 2->1 node merges during record removal. Platforms tested: FreeBSD 4.11 (sleipnir) Solaris 2.9 (shanti)
* [svn-r10150] Purpose: A new way to do conversion testRaymond Lu2005-03-041-14/+81
| | | | | | | | | | | | | | | | | Description: This is the first step of changing conversion test. This checkin is only for conversion between integers. Instead of filling source buffer with randomly generated bit pattern, this new way uses more sensible bit patterns. It's easier to see using "char" as source for example. The bit patterns will be 00000001, 00000010, 00000100, 00001000, 00010000, 00100000, 01000000, 10000000 00000000, 00000011, 00000111, 00001111, 00011111, 00111111, 01111111, 11111111 11111111, 11111110, 11111100, 11111000, 11110000, 11100000, 11000000, 10000000 The main point of this way is to avoid casting and comparison between source and destination types by compiler. The bit patterns will cover positive maximum and minimum, negative maximum and minimum if the source is signed integer. Platforms tested: h5committest and fuss.
* [svn-r10149] Purpose:Quincey Koziol2005-03-042-296/+172
| | | | | | | | | | | | | | | | | Bug fix & new feature Description: Fix a couple of off-by-one errors in assertions (code was actually correct) for 3 node redistributions. Remove "old" node removal code that is unused now. Add more tests that verify that 2-node and 3-node redistributions are working correctly for removals. Platforms tested: FreeBSD 4.11 (sleipnir) Solaris 2.9 (shanti)
* [svn-r10148] Purpose:Quincey Koziol2005-03-041-4/+42
| | | | | | | | | | | | New test Description: Add a couple more tests for removing records before I start modifying the code further. Platforms tested: FreeBSD 4.11 (sleipnir) Solaris 2.9 (shanti)
* [svn-r10147] Purpose:Quincey Koziol2005-03-041-16/+13
| | | | | | | | | | | | | | | | | Bug fix Description: Filter callback routines were being called with memory "version" of disk datatype (don't ask... :-), which could result in incorrect calculations in the filter callbacks. Solution: Rearrange code to call the filter callbacks after the final disk "version" of the disk datatype has been created. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10145] Purpose:Quincey Koziol2005-03-042-0/+7
| | | | | | | | | | | | Bug fix Description: Add some "safety net" sort of assertions and sanity checks contributed by user. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10144] Purpose:Quincey Koziol2005-03-046-0/+6
| | | | | | | | | | | | | | | | Bug fix Description: The GASS VFL driver header file was bringing in the <string.h> header file, which several other source code modules needed also, but weren't including explicitly themselves. Solution: Add includes for <string.h> to files which actually need them. Platforms tested: FreeBSD 4.11 (sleipnir) w/C++ as CC Configuration not tested by h5committest...
* [svn-r10143] Purpose:Quincey Koziol2005-03-042-2/+2
| | | | | | | | | | | Bug fix Description: Add missing test file to clean target Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r10137] Purpose:MuQun Yang2005-03-041-0/+0
| | | | | | | | | | | | | | | Update windows projects Description: 1. Add N-bit and scaleoffset filters to the project files 2. remove H5FDgass.c from HDF5 src directory 3. Add h5diff_comm.c into h5diff project Solution: Platforms tested: VS 6.0 + compaq fortran 6.6c Misc. update:
* [svn-r10136] Purpose:Albert Cheng2005-03-032-11/+23
| | | | | | | | | | | | | | | | Bug fix. Description: MPI_LONG_LONG, which is not standard yet, was used to pass the nubmer of differences found. This was needed because number of differences is defined as type hsize_t which can be arbitary large such that there is no MPI type that matches it. The value is passed between processes as an array of bytes in order to be portable. But this may not work in non-homogeneous MPI environments. This fix was actually Leon's idea. Platforms tested: Tested in QSC in which this failed.
* [svn-r10135] Purpose:Quincey Koziol2005-03-032-249/+1024
| | | | | | | | | | | | | | | Bug fix & new feature Description: Fix problem with inserting existing keys into B-tree corrupting record counts along the path to the failed insertion. Add more support for removing records, it's now handling removing records from leaves of level-1 B-trees. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Solaris 2.9 (shanti)
* [svn-r10134] Purpose:Robert E. McGrath2005-03-031-4/+4
| | | | | | | | | | Description: Solution: Platforms tested: Misc. update:
* [svn-r10133] Purpose:Albert Cheng2005-03-031-1/+32
| | | | Updated with 1.7.x changes of retiring GASS Virtual File Driver.
* [svn-r10132] Purpose:James Laird2005-03-032-4/+9
| | | | | | | | | | | | | | | Bug fix Description: When C flags are passed in using $CC variable, this can confuse test commands in configure (for instance, CC='pgcc -tp k8-32'). Solution: Previous solution didn't entirely solve problem. Wrote a sed snippit to strip flags from $CC for purposes of test in configure. Platforms tested: mir (just a configure bug)
* [svn-r10130] Purpose:Albert Cheng2005-03-0317-1587/+38
| | | | | | | Retired GASS driver. Platforms tested: H5committested.
* [svn-r10129] Corrected typos which should have said SRB instead of GASS.Albert Cheng2005-03-031-2/+2
| | | | NOt tested since there is no SRB server to test with.
* [svn-r10128] Purpose:Albert Cheng2005-03-032-6/+0
| | | | | | | | Removed GASS from summary printout. Platforms tested: Tested in heping. No h5committest since it was trivial and involved in configure stage only.
* [svn-r10127] Updated with new file.Albert Cheng2005-03-031-0/+1
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* [svn-r10125] Purpose:Albert Cheng2005-03-033-71/+98
| | | | | | | | | | | | | | | Feature--to provide a standalone mode for t_mpi.c so that it can be built outside of PHDF5 environment. Description: Move definitions that are common to all parallel test programs to a new header file called testpar.h. Leave only Parallel HDF5 tests related definitions in testphdf5.h. Platforms tested: heping (pp) and modi4(PP). Copper was down. Misc. update:
* [svn-r10123] Purpose:Albert Cheng2005-03-0249-3101/+29
| | | | | | | | | | | | | | | | | | | | | | | Removed GASS configuration and software packages associated with it. The following software are no longer configurable. checking for main in -lcrypto... yes checking for SSL_get_version in -lssl... yes checking globus_common.h usability... yes checking globus_common.h presence... yes checking for globus_common.h... yes checking for globus_module_activate in -lglobus_common... yes checking for main in -lglobus_gass_cache... yes checking for main in -lglobus_gaa... yes checking for main in -lglobus_gss... yes checking for main in -lglobus_gss_assist... yes checking for main in -lglobus_io... yes checking for main in -lglobus_gass_transfer_assist... yes checking for main in -lglobus_gass_transfer... yes checking for globus_gass_open in -lglobus_gass_file... yes Platforms tested: h5committested (but copper was down.) tested in modi4 too.
* [svn-r10122] Purpose:Albert Cheng2005-03-022-4/+5
| | | | | | | | | | | | | | | | typo fix and small improvement. Description: t_coll_chunk.c: ccdataset_vrfy() was using a wrong routine name to identify itself. testphdf5.c: Add a definition of NFILENAME to be the common dimension size of FILENAME[] and filenames[][] since they must have the same first dimension size. Platforms tested: h5committested.
* [svn-r10120] Purpose:Albert Cheng2005-03-021-0/+6
| | | | updated with MPIPOSIX fix.
* [svn-r10118] Snapshot version 1.7 release 45HDF Admin2005-03-026-21/+44
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* [svn-r10117] Purpose:Albert Cheng2005-03-021-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: "testphdf -p" would with data verification errors. The reasons were that the MPIPOSIX driver file open and close, especially the close routine provide no "coordination" between processes. The testphdf5 tests reuse the same file for test data file by opening using H5Fcreate with the HDF5_FCC_TRUNC option. The test routines do not provide any code to ensure that all processes have finished one test before moving to the next test. Some "faster" process would have finished verifying its portion of data as correct and move to the next test which opens the same file with TRUNCATOIN which truncates the previous data file. But some "slower" processes are still verifying the "previous" data file which all of a sudden got truncated by the "faster" process. Solution: Technically, the test program should be fixed to ensure all processes have finished one test before any is allowed to move to the next test. OTOH, the MPIO VFD has no problem with this test because MPI-IO requires File open and close be called collectively correct and ensure it is returned properly. I choose to fix the MPIPOSIX close routine to provide some sort of coordination between processes by requiring all processes to have completed the close of a file before it is returned to user space. This makes the MPIPOSIX close routine behaves more like the MPIO close routine, thus provide more protection for user applications that fail to code in the coordination. But having the barrier in the MPIPOSIX close routine would penalize applications where it is "okay" for some processes to close its file handle and race ahead to do other things since it is not going to access this file, therefore whether other processes are still using the file is immaterial. Maybe this protective coordination should be optional and can be turned off by confident users who need not this sort of protection. Platforms tested: "h5committested" and tested in modi4 and tesla. Misc. update:
* [svn-r10114] Purpose:James Laird2005-03-022-0/+24
| | | | | | | | | | | | | | | | | | | | | Bug fix Description: Libtool simply doesn't seem to support shared libraries for pgcc, but tries to build them anyway. Solution: Edited configure to disable shared libraries in libtool script when pgcc is being used. This is a more drastic fix than the problem requires, but it is difficult to detect when this problem will occur. There is discussion online about shared libraries with pgcc, so hopefully libtool will support pgcc and this fix will become unneccesary. Platforms tested: sol, copper, mir, sleipnir Misc. update:
* [svn-r10113] Purpose: Bug fixRaymond Lu2005-03-011-0/+2
| | | | | | | | | | | Description: Condition check of macro H5_ULLONG_TO_FP_CAST_WORKS was accidentally taken out in last revision. This macro is defined for Windows because Windows doesn't support conversion from "unsigned long long" to any floating-point type. Solution: Added it back to H5T_conv_ullong_xxx() functions(xxx is any of "float", "double", or "long double"). Platforms tested: tested on Windows.
* [svn-r10112] Purpose:James Laird2005-03-012-3/+3
| | | | | | | | | | | | | | | Bug fix Description: A test in configure.in redirected output in a way that made mir (at least) unhappy (test: too many arguments). Solution: Changed the semantics so that mir was happy. This didn't seem to make any other platforms unhappy, either. Platforms tested: eirene, modi4, copper, mir, sleipnir (only tested configure)
* [svn-r10111] Purpose:Robert E. McGrath2005-03-011-2/+2
| | | | | | | | | | | | | | | | bug fix Description: H5DSget_scale_name, H5DSget_lablel return wrong value when truncating to 1 character array. Solution: fix it. Platforms tested: verbena,shanti,copper Misc. update:
* [svn-r10109] Purpose:Xiaowen Wu2005-03-011-37/+69
| | | | | | | | | | | | | | | | Bug fix. Description: The nbit filter does not check error when calling some utility functions that can return a failure. Solution: Add error handling for these utility functions. Platforms tested: heping, copper Misc. update:
* [svn-r10108] Purpose:James Laird2005-02-284-8/+15
| | | | | | | | | | | | | | Bug fix Description: C++ tests would die with strange linking-type errors. Solution: C++ build needs to be static, too. Applied -static flags liberally in c++/src and c++/test directories. Platforms tested: sleipnir, heping
* [svn-r10107] Purpose:James Laird2005-02-2810-18/+33
| | | | | | | | | | | | | | | Bug fix Description: Fortran builds were dying with unknown flags. Solution: Fortran builds should be static, not shared. Static flags had been specified for libraries, but apparently were also needed for executables. Solved problem by adding static flag to everything in fortran directories. Platforms tested: mir, eirene
* [svn-r10106] James Laird2005-02-282-3/+4
| | | | | | | | | | | | | | | | | Purpose: Bug fix Description: Libtool 1.5.14 added some extra flags that needed to be passed from the compiler to the linker. icc did not handle this correctly and complained when it saw unknown flags. Solution: Set the -Wl flag correctly on freebsd so that icc knows to pass flags through to the linker. Platforms tested: sleipnir (gcc, g++, icc, gcc40)
* [svn-r10104] Purpose:James Laird2005-02-281-2/+2
| | | | | | | | | | | | | Bug fix Description: h5vers would spit out the output that reconfigure script produced. Solution: Sent output from reconfigure to /dev/null. h5vers is now quiet as before. Platforms tested: verbena, eirene, heping
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