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* Update HDF5 examples to correct version.Larry Knox2018-07-241-2/+2
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* Correct a few typos.Larry Knox2018-07-241-3/+3
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* Correct typo in comment in config/gnu-flags.Larry Knox2018-07-241-1/+1
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* Update bine/release to create batch scripts and build-unix-sh, and toLarry Knox2018-07-241-33/+38
| | | | put files in a subdirectory.
* Merge pull request #1148 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developBinh-Minh Ribler2018-07-241-4/+4
|\ | | | | | | | | * commit '9838a1a08f946417d6d361b8b2c86307288cc50d': Add missing '\' in the middle of the public headers list in Makefile.am.
| * Add missing '\' in the middle of the public headers list in Makefile.am.Larry Knox2018-07-241-4/+4
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* Merge pull request #1146 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp4:develop ↵Binh-Minh Ribler2018-07-2437-256/+730
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | to develop Code improvement New class for dataset access property list * commit '3c6a39858fef9e7207cd7c3e3057267ec380be0b': Fixed typos Entered entries for HDFFV-10150, HDFFV-10458, HDFFV-1047 Updated for C2Cppfunction_map.htm Added class DSetAccPropList Description: - Added class DSetAccPropList for the dataset access property list. - Added wrapper for H5Dget_access_plist to class DataSet // Gets the access property list of this dataset. DSetAccPropList getAccessPlist() const; Code improvement Description: Moved the new H5Object::getInfo member functions to H5Location and made them overloaded with the existing H5Location::getObjinfo. This way is cleaner than the previous approach. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * Fixed typosBinh-Minh Ribler2018-07-232-13/+13
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| * Entered entries for HDFFV-10150, HDFFV-10458, HDFFV-1047Binh-Minh Ribler2018-07-231-2/+61
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| * Updated for C2Cppfunction_map.htmBinh-Minh Ribler2018-07-231-1/+1
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| * Added class DSetAccPropListBinh-Minh Ribler2018-07-2230-39/+481
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Added class DSetAccPropList for the dataset access property list. - Added wrapper for H5Dget_access_plist to class DataSet // Gets the access property list of this dataset. DSetAccPropList getAccessPlist() const; - Added wrappers for H5Pset_chunk_cache and H5Pget_chunk_cache to class DSetAccPropList // Sets the raw data chunk cache parameters. void setChunkCache(size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0) // Retrieves the raw data chunk cache parameters. void getChunkCache(size_t &rdcc_nslots, size_t &rdcc_nbytes, double &rdcc_w0) - Added two more arguments to H5Location::createDataSet: const DSetAccPropList& dapl = DSetAccPropList::DEFAULT const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT - Added one more argument to H5Location::openDataSet: const DSetAccPropList& dapl = DSetAccPropList::DEFAULT Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * Merge branch 'develop' of ↵Binh-Minh Ribler2018-07-2113-63/+175
| |\ | |/ |/| | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp4 into develop
* | Merge pull request #1145 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2018-07-203-3/+110
|\ \ | | | | | | | | | | | | | | | | | | develop * commit 'ad317226eacbf5b0a770e458290236ba91861fdc': Fix for HDFFV-9277: update the ainfo message after removing an attribute.
| * | Fix for HDFFV-9277: update the ainfo message after removing an attribute.Vailin Choi2018-07-203-3/+110
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* | Merge pull request #1141 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp4:develop ↵Binh-Minh Ribler2018-07-197-35295/+24377
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop Fixed HDFFV-10472 and replaced the C2Cpp function mapping table with a more supported format. * commit 'dd0a040ec807912b80a9f1779fbf46c65d01cd57': Fixed EED-319 Description: - Fixed doc issue Added an html version for the C++ function mapping table and removed the single web page version. Updated cpp_doc_config to use the html file. - Added a couple more minor tests Fixed HDFFV-10472 Description: Added operator!= to DataType bool operator!=(const DataType& compared_type) Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* \ \ Merge pull request #1144 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developAllen Byrne2018-07-191-1/+9
|\ \ \ | | | | | | | | | | | | | | | | * commit '77fa93e07b2b860ca314b2c332ebd440544e3326': Add cmakehdf5 command line option to turn on shell script testing. Option is on by default but can be disabled with --disable-shell-testing.
| * | | Add cmakehdf5 command line option to turn on shell script testing.Larry Knox2018-07-191-1/+9
|/ / / | | | | | | | | | Option is on by default but can be disabled with --disable-shell-testing.
* | | Merge pull request #1143 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2018-07-185-23/+26
|\ \ \ | | | | | | | | | | | | | | | | * commit '3c6654921000a8659276f1fcb32dd0ada1353558': Apply Cygwin pathches from Marco Atzeri. Commit Joe Lee's typo corrections for src/H5MF.c.
| * \ \ Merge branch 'develop' of ↵Larry Knox2018-07-18141-1486/+6539
| |\ \ \ | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop
| * | | | Apply Cygwin pathches from Marco Atzeri.Larry Knox2018-07-185-23/+26
| | | | | | | | | | | | | | | | | | | | Commit Joe Lee's typo corrections for src/H5MF.c.
* | | | | Merge pull request #1142 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2018-07-184-36/+30
|\ \ \ \ \ | |_|/ / / |/| | | | | | | | | | | | | | | | | | | | | | | | * commit '3a8892a0d90edb6c21c91ede18bf6b3cb2895af0': Adjust error handling TRILABS-137 Convert tcheck_version script to cmake tests ifdef around std flag for cygwin
| * | | | Adjust error handlingAllen Byrne2018-07-181-2/+8
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| * | | | TRILABS-137 Convert tcheck_version script to cmake testsAllen Byrne2018-07-182-30/+17
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| * | | | ifdef around std flag for cygwinAllen Byrne2018-07-181-4/+5
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| | | * Code improvementBinh-Minh Ribler2018-07-2110-203/+176
| | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Moved the new H5Object::getInfo member functions to H5Location and made them overloaded with the existing H5Location::getObjinfo. This way is cleaner than the previous approach. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| | * Fixed EED-319Binh-Minh Ribler2018-07-185-35298/+24282
| | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Fixed doc issue Added an html version for the C++ function mapping table and removed the single web page version. Updated cpp_doc_config to use the html file. - Added a couple more minor tests
| | * Merge branch 'develop' of ↵Binh-Minh Ribler2018-07-170-0/+0
| | |\ | |_|/ |/| | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp4 into develop
* | | Merge pull request #1140 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp4:develop ↵Binh-Minh Ribler2018-07-178-10/+349
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop Fixed part of HDFFV-10458: wrappers for H5Oget_info2, H5Oget_info_by_name2, and H5Oget_info_by_idx2. * commit '3aa24435180d10aeca6493f7c1b277cfd5c73fad': Fixed HDFFV-10458 partially Description: Added wrappers for H5Oget_info_by_idx2. Fixed comments Fixed HDFFV-10458 partially Description: Added wrappers for H5Oget_info2 and H5Oget_info_by_name2.
| | | * Fixed HDFFV-10472Binh-Minh Ribler2018-07-173-0/+98
| | |/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | Description: Added operator!= to DataType bool operator!=(const DataType& compared_type) Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * | Fixed HDFFV-10458 partiallyBinh-Minh Ribler2018-07-174-9/+163
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Added wrappers for H5Oget_info_by_idx2. // Returns information about an HDF5 object, given its index. void getInfo(const char* grp_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) void getInfo(const H5std_string& grp_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * | Fixed commentsBinh-Minh Ribler2018-07-172-6/+14
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| * | Merge branch 'develop' of ↵Binh-Minh Ribler2018-07-177-41/+612
| |\ \ | |/ / |/| | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_bmr_cpp4 into develop
* | | Merge pull request #1139 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp4:develop ↵Binh-Minh Ribler2018-07-173-4/+12
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop Fixed HDFFV-10476, HDFFV-10478, HDFFV-10480 * commit 'fe916ada370f33b48b3c39dbf9e3ff73df00fdb7': Removed white space Fixed HDFFV-10476, HDFFV-10478, HDFFV-10480 Description: Fixed potential out of bound read and NULL pointer dereferences. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* \ \ \ Merge pull request #1135 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developLarry Knox2018-07-177-41/+612
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | * commit '46986950ad2818a5235c821fa576e0f6470b39be': TRILAB-31 add note TRILAB-31 Working locally
| * \ \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-07-164-27/+43
| |\ \ \ \ | |/ / / / |/| | | | | | | | | | | | | | | | | | | | | | | | * commit '55666ace551369b3d72430c090ab9f1571e1be75': Combined macro lines as Dana commented Platforms tested: Linux/64 (jelly) (very minor) Fix evaluation of __has_attribute(no_sanitize_address) on older GCC versions Fixed division-by-zero issues Description: Fixed HDFFV-10481 and HDFFV-10477, division by 0. Fixed another occurrence beside what were reported. Also, changed a local variable to avoid an unnecessary cast. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * | | | TRILAB-31 add noteAllen Byrne2018-07-161-1/+7
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| * | | | TRILAB-31 Working locallyAllen Byrne2018-07-166-40/+605
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| | | * | Fixed HDFFV-10458 partiallyBinh-Minh Ribler2018-07-176-10/+187
| | |/ / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Added wrappers for H5Oget_info2 and H5Oget_info_by_name2. // Returns information about an HDF5 object. void getInfo(H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC) // Returns information about an HDF5 object, given its name. void getInfo(const char* name, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) void getInfo(const H5std_string& name, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| | * | Removed white spaceBinh-Minh Ribler2018-07-171-1/+2
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| | * | Fixed HDFFV-10476, HDFFV-10478, HDFFV-10480Binh-Minh Ribler2018-07-173-4/+11
| |/ / |/| | | | | | | | | | | | | | | | | | | | | | | Description: Fixed potential out of bound read and NULL pointer dereferences. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* | | Merge pull request #1134 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_cpp4:develop ↵Binh-Minh Ribler2018-07-163-24/+36
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop Fixed HDFFV-10481 and HDFFV-10477 * commit '83ca39ba9a2d6852dd7754b533f7839e9d2a0107': Combined macro lines as Dana commented Platforms tested: Linux/64 (jelly) (very minor) Fixed division-by-zero issues Description: Fixed HDFFV-10481 and HDFFV-10477, division by 0. Fixed another occurrence beside what were reported. Also, changed a local variable to avoid an unnecessary cast. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * | | Combined macro lines as Dana commentedBinh-Minh Ribler2018-07-163-6/+3
| | | | | | | | | | | | | | | | | | | | Platforms tested: Linux/64 (jelly) (very minor)
| * | | Fixed division-by-zero issuesBinh-Minh Ribler2018-07-163-24/+39
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Fixed HDFFV-10481 and HDFFV-10477, division by 0. Fixed another occurrence beside what were reported. Also, changed a local variable to avoid an unnecessary cast. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* | | | Merge pull request #1136 in HDFFV/hdf5 from ↵Jerome Soumagne2018-07-161-3/+7
|\ \ \ \ | |_|/ / |/| | | | | | | | | | | | | | | | | | | ~JSOUMAGNE/hdf5_fork:topic_sanitize_gcc48_fix to develop * commit 'd5e7134df911808bba26ac6629e1fe8324916585': Fix evaluation of __has_attribute(no_sanitize_address) on older GCC versions
| * | | Fix evaluation of __has_attribute(no_sanitize_address) on older GCC versionsJerome Soumagne2018-07-161-3/+7
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* | | Merge pull request #1112 in HDFFV/hdf5 from ↵Jerome Soumagne2018-07-161-7/+5
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | ~JSOUMAGNE/hdf5_fork:gcc_sanitize to develop * commit '5afeefe1bae62fa5faf06c0c6f240e10863a2693': Fix H5detect to use no_sanitize_address attribute and support GCC sanitizers
| * | | Fix H5detect to use no_sanitize_address attribute and support GCC sanitizersJerome Soumagne2018-06-151-7/+5
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* | | | Merge pull request #1127 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2018-07-164-929/+4626
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'a8d6f100cdddbfc42d0c4abfeb4ceb8788b1b087': Add note about single chunk caching and serial library Add check for actually using the MPI file driver when caching one chunk Fix error message mentioning wrong MPI function used Fix for HDFFV-10509 Revise H5D__mpio_array_gatherv() to not allocate memory needlessly Add test to continually grow and shrink chunks Changes to test with checksum filter as well as deflate filter Eliminate warning about signed to unsigned conversion Remove unused local variable Fix bug in parallel reads of compressed data Add data verification to parallel filtered compound write tests Add seven of fourteen parallel filtered data partial read tests
| * | | | Add note about single chunk caching and serial libraryJordan Henderson2018-07-131-1/+7
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| * | | | Add check for actually using the MPI file driver when caching one chunkJordan Henderson2018-07-131-1/+15
| | | | | | | | | | | | | | | Better explain rationale behind chunk caching issue fix
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