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* Delete disused routine H5FD_has_conflict().David Young2020-08-202-19/+0
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* Sleep 1/10s between H5Dopen() tries. Make a couple of warning/error messagesDavid Young2020-08-181-2/+6
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* Perform the dataset opens in reverse order to their creation, and ifDavid Young2020-08-181-5/+49
| | | | | | | | | | | | H5Dopen fails, rapidly retry up to 9,999 times. Log H5Dopen failures, but log no more than once every five seconds to avoid spamming the terminal. With these changes, it's easier for the reader to open the last dataset before the writer created it, but the reader recovers instead of quitting with an error. It should only be necessary to retry opening the *last* dataset; all previous datasets should open on one try if the last is open.
* Fix copy-and-paste error: do not copy the H5T_C_S1 type twice.David Young2020-08-172-10/+0
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* Fix a regression that crept in with the August merge: use the "swmr" VFD whenDavid Young2020-08-051-31/+39
| | | | that's called for.
* Merge branch 'aug-develop' into aug-merge-attempt/feature/vfd_swmrDavid Young2020-08-04310-12641/+13767
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| * Merge pull request #2727 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-08-0217-309/+308
| |\ | | | | | | | | | | | | | | | | | | | | | to develop * commit 'b9de162eae800a9459f0f1f07d2b043f73f8a907': Minor normalizations with 1.12 branch Fixed bad parens in H5trace.c
| | * Minor normalizations with 1.12 branchDana Robinson2020-08-0116-266/+265
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| | * Merge branch 'develop' into develop_minorDana Robinson2020-08-012-5/+8
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| * | Merge pull request #2723 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-08-019-414/+331
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '08dca47475f41e93348cf0c2ea708e787c232014': Minor normalizations with hdf5_1_10
| * \ \ Merge pull request #2722 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-07-312-5/+8
| |\ \ \ | | | | | | | | | | | | | | | | | | | | * commit 'fc57490e02835ddfce644135e93e893f77b379d3': Mingw copy disabled
| | * | | Mingw copy disabledAllen Byrne2020-07-312-5/+8
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| | | * Fixed bad parens in H5trace.cDana Robinson2020-07-311-43/+43
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| | * Minor normalizations with hdf5_1_10Dana Robinson2020-07-319-414/+331
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| * Merge pull request #2720 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-07-3111-312/+220
| |\ | | | | | | | | | | | | | | | | | | to develop * commit 'c8ba30d965f0342e5725a11cb562dfb22c8a8d24': Minor normalization with 1.10 branch
| | * Merge branch 'develop' into develop_minorDana Robinson2020-07-3071-4714/+4091
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| * | Merge pull request #2718 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-07-3010-134/+126
| |\ \ | | | | | | | | | | | | | | | | * commit 'ff4a9d0ec2e85cf15f769006e92e756a79869ab8': Warnings reduction in tools
| | * | Warnings reduction in toolsAllen Byrne2020-07-3010-134/+126
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| * | Merge pull request #2716 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-07-299-27/+27
| |\ \ | | | | | | | | | | | | | | | | | | | | * commit '6a1cf090c6a2f970084c714a2f75a31d68a0a6a8': Correct reference file Correct h5diff filenames
| | * | Correct reference fileAllen Byrne2020-07-291-2/+2
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| | * | Correct h5diff filenamesAllen Byrne2020-07-299-29/+29
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| * | Merge pull request #2711 in HDFFV/hdf5 from bmr-HDFFV-11120 to developBinh-Minh Ribler2020-07-292-1/+29
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869) * commit '707e30c6be1954c0027374124207e46caae68cbc': Fixed typos in error messages. Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)
| | * | Fixed typos in error messages.Binh-Minh Ribler2020-07-281-3/+3
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| | * | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Binh-Minh Ribler2020-07-2223-236/+162
| | |\ \ | | | | | | | | | | | | | | | bmr-HDFFV-11120
| | * | | Fix HDFFV-11120 and HDFFV-11121 (CVE-2018-13870 and CVE-2018-13869)Binh-Minh Ribler2020-07-222-1/+29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: When a buffer overflow occurred because a name length was corrupted and became very large, h5dump produced a segfault on one file and a memcpy parameter overlap on another file. This commit added checks that detect a read pass the end of the buffer to prevent these error conditions. Platforms tested: Linux/64 (jelly) SunOS 5.11 (emu)
| * | | | Merge pull request #2714 in HDFFV/hdf5 from ↵Dana Robinson2020-07-284-5/+99
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5s_set_extent_none to develop * commit 'e4603ff8a171e82de6373ba6eddcf59d5eeab5aa': Updated the Java tests to deal with H5Sset_extent_none changes Fixed additional typos in tselect.c comments. Fixes typo in tselect.c Updates H5Sset_extent_none() to set H5S_NULL
| | * | | | Updated the Java tests to deal with H5Sset_extent_none changesDana Robinson2020-07-281-1/+1
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| | * | | | Fixed additional typos in tselect.c comments.Dana Robinson2020-07-281-2/+2
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| | * | | | Fixes typo in tselect.cDana Robinson2020-07-281-1/+1
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| | * | | | Updates H5Sset_extent_none() to set H5S_NULLDana Robinson2020-07-283-4/+98
| | | |/ / | | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | The API call used to set the internal H5S_NO_CLASS value which produced errors when such a dataspace was passed to many other API calls. Fixes HDFFV-11027
| * | | | Merge pull request #2697 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-07-2864-4679/+3942
| |\ \ \ \ | | |/ / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '5857bb817019b8513f796c9564de3f1845f9a44a': Only one line needed to compare Revert err file revert error-stack enable Add release notes for tools add test file ext Correct file name in test Tools refactor
| | * | | Only one line needed to compareAllen Byrne2020-07-271-0/+1
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| | * | | Revert err fileAllen Byrne2020-07-271-8/+0
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| | * | | revert error-stack enableAllen Byrne2020-07-201-1/+1
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| | * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-2023-236/+162
| | |\ \ \ | | |/ / / | |/| | | | | | | | | | | | | * commit '74e09473c825610d203565e5ed9deb156256d6ea': Minor normalization with 1.10.
| | * | | Add release notes for toolsAllen Byrne2020-07-201-2/+38
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| | * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-178-1/+200
| | |\ \ \ | | | |/ / | | | | | | | | | | | | | | | | | | | | * commit '9d3ea366d4bf3278e8260f4d5cdcc88cb4b61c56': Update MANIFEST. Add new test to Cmake. Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
| | * | | add test file extAllen Byrne2020-07-172-4/+4
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| | * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-174-31/+30
| | |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'e36047b9b9839d1fd0b4009b7066b8b50b95bc6d': Minor normalization with 1.10
| | * \ \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-164-25/+336
| | |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '58d37c2295044ad1a201d6671cdd67ae380b84f8': H5R: fix type conversion of references within vlen type
| | * | | | | Correct file name in testAllen Byrne2020-07-161-1/+1
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| | * | | | | Tools refactorAllen Byrne2020-07-1560-4667/+3901
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Move error_stack setup to tools library Add structure for h5dump properties Eliminate duplicated h5diff functions Use properties structure in place of argument lists.
| | * | | | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-142-29/+8
| | |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '806f5b5b2a280072f62f58c48e93acdc84f2b3ae': Removed POSIX #defines from configure on Solaris. Fallback to older time functions in new timer code.
| | * \ \ \ \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-117-5/+94
| | |\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'b480d0a38b1e265c55c74262bf384d255a33e07b': Remove path to szip header file from AM_CPPFLAGS when configure check of libsz fails. Fix for HDFFV-10830. HDFFV-11116 Add option for install location of Fortran MOD files
| | * \ \ \ \ \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-0921-1074/+1055
| | |\ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'f5da9b1befeb81aa9f4d97df3ec606f801807420': Minor changes from normalization with 1.10
| | | | | | | | | * Minor normalization with 1.10 branchDana Robinson2020-07-2711-312/+220
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| * | | | | | | | Merge pull request #2703 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-07-2023-236/+162
| |\ \ \ \ \ \ \ \ | | |_|_|_|_|_|_|/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '242459231b40a88741cbc85df4272914b5d8bed3': Minor normalization with 1.10.
| | * | | | | | | Minor normalization with 1.10.Dana Robinson2020-07-2023-236/+162
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| * | | | | | | | Merge pull request #2693 in HDFFV/hdf5 from ↵Vailin Choi2020-07-178-1/+200
| |\ \ \ \ \ \ \ \ | | |_|_|_|_|_|_|/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop * commit '3023b34272cc6ada84aebfa7441a6a55afa3621c': Update MANIFEST. Add new test to Cmake. Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
| | * | | | | | | Update MANIFEST.vchoi2020-07-162-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add new test to Cmake.
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