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* [svn-r18574] Description:Quincey Koziol2010-04-151-0/+1
| | | | | | | | | | | | | | | | | | | | | | | Bring r18571 from trunk to 1.8 branch: Bring r18542 from metadata journaling "merging" branch to trunk: Bring new object header pin/unpin & protect/unprotect routines and split-out object header chunk proxy changes from metadata_journaling branch to "merging" branch, along with some other minor tweaks to clean up compiler warnings, etc. Also: clean up chunk protect/unprotect calls when allocating or freeing space in a chunk, optimize metadata accumulator code to avoid some re-reading of information from the file, refactor H5O_pin/H5O_unpin from way they are done on the merging branch back to way they were previously done on trunk, other minor code cleanups, etc. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode (h5committested on trunk)
* [svn-r18554] Update. I added vms/test/H5srcdir_str.h and ↵Raymond Lu2010-04-141-0/+2
| | | | vms/c++/test/H5srcdir_str.h. No test is needed.
* [svn-r18427] Purpose:Jonathan Kim2010-03-181-1/+1
| | | | | | | | | | | | | Fix for bug1814 - NPOESS: h5repack doesn't handle references to the groups as an element of a dataset Description: Merged from hdf5 trunk r18425 handles object reference to named-datatype as well. Add test cases. Tested: jam
* [svn-r18424] Upgraded all project files to VS2008. Allen Byrne2010-03-181-2/+1
| | | | | | Changed batch files by removing VS2005 and IVF91 options. Added libsettings project to behave like h5tinit.vcproj. Updated Manifest
* [svn-r18422] Description:Quincey Koziol2010-03-181-0/+8
| | | | | | | | | | | | | | | | | | | | | | | Bring r18413:18420 from trunk to 1.8 branch: - unify srcdir query, etc. - Move libhdf5.settings string out of H5Tinit.c Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18400] Purpose:Jonathan Kim2010-03-091-0/+3
| | | | | | | | | | | add test cases for h5copy - copy external links with/without ‘–f ext’ option (relate to bug 1733) Description: merged from hdf5 trunk (r18398 and r18399) Tested: jam
* [svn-r18321] Purpose:Jonathan Kim2010-02-231-0/+2
| | | | | | | | | | | | | | Bug1727 - h5copy: add test cases for object and region references Note: merged from hdf5 trunk 18319 and 18320 File added: tools/h5copy/testfiles/h5copy_ref.out.ls tools/h5copy/testfiles/h5copy_ref.h5 Tested: jam
* [svn-r18279] Purpose:Jonathan Kim2010-02-191-39/+85
| | | | | | | | | | Work for bugzilla 1754: h5diff: support comparing through links. Description: merged from hdf5 trunk (18164, 18165, 18166, 18167, 18170, 18266, 18273) Tested: h5committest (jam, amani and linew)
* [svn-r18270] Changes to h5stat in response to bug 1778:Vailin Choi2010-02-171-0/+5
| | | | | | | | 1. Gather attribute info for named datatype, 2. Fixed -T, -G, -A, -D options 3. Brought over some changes from trunk h5stat h5committested.
* [svn-r18132] Add test files for h5diff relate to r18130 commit.Jonathan Kim2010-01-211-0/+2
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* [svn-r18073] Description:Quincey Koziol2010-01-071-0/+1
| | | | | | | | | | | | | | | Bring r18072 from trunk to 1.8 branch: Bring r18071 from metadata journaling merge branch: Refactor local heap routines with changes from metadata journaling branch, along with other misc. changes as the changes on the metadata journaling branch are being converged with the current state of the trunk. Tested on: Mac OS X/32 10.6.2 (amazon) debug & prod Linux/64 2.6 (amani) prod FreeBSD/64 (liberty) prod
* [svn-r18069] Added entry to MANIFEST for new file config/ibm-aix.Larry Knox2010-01-061-0/+1
| | | | Tested chkmanifest on jam.
* [svn-r18054] Updated for the moves of the testfiles.Albert Cheng2009-12-261-4/+2
| | | | Checked by bin/chkmanifest.
* [svn-r18038] Description:Quincey Koziol2009-12-191-2/+0
| | | | | | | | | | | | | | Bring r18037 from trunk to 1.8 branch: Bring r18035 from merge_metadata_journaling branch to trunk: More "brush clearing" convergence between metadata_journaling branch and the trunk. Tested on: Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode (h5committested on trunk)
* [svn-r17944] Description:Quincey Koziol2009-12-011-0/+1
| | | | | | | | | | | Bring r17943 from trunk to 1.8 branch: Finish refactoring v2 B-trees so that they can have client callback context provided to the encode/decode callbacks. Tested on: FreeBSD/64 6.3 (liberty) (h5committested on trunk)
* [svn-r17738] Description:Quincey Koziol2009-10-231-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring revisions 17649, 17657 and 17658 from trunk to 1.8 branch: 17649: Refactor v2 B-trees to pin the B-tree header in the cache instead of using separate reference counted data structure. 17657: Refactor the v2 B-tree code to use an open & close call internally, in preparation for making those part of the library private APIs for dealing with v2 B-trees. 17658: Rename 'H5B2_t' -> 'H5B2_hdr_t' and 'bt2' -> 'hdr' in preparation for make v2 B-tree open/close routines library private (instead of static). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17695] Purpose: Code improvementBinh-Minh Ribler2009-10-201-0/+1
| | | | | | | | | | | | | Description: Fixed CommonFG::getComment and CommonFG::getLinkval to provide default values for buffer size to improve usability. Added test file tlinks.cpp, which only contains test for getLinkval and will expand when C++ wrappers for H5L functions are implemented. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty)
* [svn-r17687] Added new windows project filesAllen Byrne2009-10-201-0/+2
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* [svn-r17645] Purpose:Mike McGreevy2009-10-151-12/+0
| | | | | | | | | | | | | | | Merge from Trunk Description: Merging all of my CFLAGS-related changes from trunk to 1.8 This includes revision #s: 17616, 17625, 17627, 17639, and 17643. Tested: h5committest and some additional checks on our FreeBSD as well as NCSA's machines.
* [svn-r17638] Description:Quincey Koziol2009-10-131-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | Bring r17624 from trunk to 1.8 branch: Don't allow reads to change or add to the metadata accumulator, since they might be speculative and could bring raw data into the metadata accumulator. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17607] ode Cleanup:Albert Cheng2009-10-071-1/+0
| | | | | | | | TFLOPS machine has retired long ago. Removed all code specific for its support. Test: h5committested.
* [svn-r17565] Fix for Bug 1562. H5DS.c checked for other locations which need ↵Allen Byrne2009-10-011-0/+1
| | | | | | to account for platform dependent types in dealing with ds_list_t. Added generator program for test files of LE and BE dimension scales. Tested: local linux, h5committest
* [svn-r17556] Description:Quincey Koziol2009-09-291-2/+2
| | | | | | | | | | Correct compile warnings and rename fiels to match the rest of the test files in this directory. Note: this is currently failing for srcdir builds! Tested on: FreeBSD/32 6.3 (duty)
* [svn-r17554] Fix for Bug 1562. H5DSis_attached needed to account for ↵Allen Byrne2009-09-291-0/+2
| | | | | | | | platform dependent types. Added test and test files for LE and BE dimension scales. Reworked part of test_ds file as part of debug. Added missing H5Tclose in region reference routines. Tested: local linux, smirom, linew
* [svn-r17548] ↵Albert Cheng2009-09-291-0/+2
| | | | | | | | | | | | | | | | ------------------------------------------------------------------------ r17543 | acheng | 2009-09-28 23:43:22 -0500 (Mon, 28 Sep 2009) | 8 lines New test: (Bug ID 1656): Add new tests (tcheck_version, testcheck_version.sh) to verify H5check_version() does issue warnings and abort accordingly. Changed H5check_version() to suppress the warning message totally if $HDF5_DISABLE_VERSION_CHECK is 2 or higher. (Old behavior treated 3 or higher the same as 1, that is to print a warning and allows the program to continue. Tests: H5committed tested plus jam serial tested.
* [svn-r17526] Description:Quincey Koziol2009-09-241-0/+2
| | | | | | | | | Add backward compatibility test to make certain that the 1.8 library handles encountering a file with a fixed array chunk index gracefully. Tested on: FreeBSD/32 6.3 (duty) w/production (too minor to require h5committest)
* [svn-r17499] Purpose:Albert Cheng2009-09-181-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Stage 2 implementation of embedded library information feature. H5.c: added code to print the embedded library information when there is a library versions mis-match occurs. This ensures the library information string is included in the executable. Also modifies the code so that the Library mismatch warning string is included only once in the executable. H5private.h: Added a global reference to the libinfo string variable to prepare for possible stage 3 implementation of a public API. test/testlibinfo.sh.in: A new test added to verify the library information is indeed included in the executables. configure.in: configure: Added entry to auto-generate test/testlibinfo.sh. H5detect.c: Modified the libhdf5settings generating code to allow it to insert the strings to a file other than stdout. This maybe needed in stage 3 implementation. MANIFEST: updated with the newly added file of testlibinfo.sh.in. Tested: h5committest passed. Also passed jam in serial mode.
* [svn-r17493] Bring changes from trunk to tools lib, h5dump and error handling.Allen Byrne2009-09-171-247/+9
| | | | Tested: h5committest, local linux
* [svn-r17374] Description:Quincey Koziol2009-08-181-0/+1
| | | | | | | | | | | Bring r17365 from trunk to 1.8 branch: Final merge of changes from sblock_mdc branch back to trunk. The superblock is now managed by the metadata cache. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17294] Updated for newly added files.Albert Cheng2009-08-011-0/+2
| | | | Tested by bin/chkmanifest.
* [svn-r17260] add test cases for h5diffPeter Cao2009-07-291-0/+2
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* [svn-r17244] Description:Quincey Koziol2009-07-271-0/+1
| | | | | | | | | | | Bring r17243 from trunk to 1.8 branch: Refactor how the layout message is created/written/read in the dataset's object header. Tested on: FreeBSD/32 6.3 (duty) in debug mode (change h5committested on trunk)
* [svn-r17113] Maintenance: Removed duplicated entry from the MANIFEST file.Elena Pourmal2009-06-251-1/+0
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* [svn-r17107] Added new windows build examples batch fileAllen Byrne2009-06-251-0/+1
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* [svn-r17055] Added missing windows vnet project files.Allen Byrne2009-06-161-0/+2
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* [svn-r17041] New perf_serial project filesAllen Byrne2009-06-121-0/+2
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* [svn-r16920] Description:Quincey Koziol2009-05-051-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Merge these trunk revisions which occurred during the 1.8.3 release code freeze back to the 1.8 branch: From Quincey: 16845 16847 16849 16851 16858 16869 16897 From Ray: 16859 16880 From Allen: 16863 Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16802] Purpose: Fix bug 1516Neil Fortner2009-04-201-0/+1
| | | | | | | | | | | Description: h5repack previously would not take named datatypes into consideration when copying datasets and attributes. This would cause extra anonymous datatypes in the target file at best, and cause errors halfway through the repacking at worst. h5repack should now always handle named datatypes correctly. Named datatypes are also now converted to the native type when -n is given. Tested: jam, linew, smirom (h5committest)
* [svn-r16712] Purpose: Fix bug 1423Neil Fortner2009-04-081-0/+1
| | | | | | | | | | | | | | Description: Versions of the library between 1.3.0 and 1.6.3 have a bug which prevents them from opening any file that does not have the root group's symbol table information cached in the root group's entry in the superblock. Prior to 1.8 this was not an issue as this information was always cached. However, 1.8.0 stopped writing this information (which is not required by the file format specification), and these older versions can therefore not read files created or last written by versions 1.8.0 to 1.8.2. This fix modifies the library to once again add this information to the superblock (when using the old file format). Tested: jam, linew, smirom (h5committest)
* [svn-r16595] Purpose: fix bug 1189Neil Fortner2009-03-231-0/+1
| | | | | | | | | | | Description: Some files apparently exist in the wild which have corrupt symbol table messages on the root group. These files can be opened by 1.6 (which uses the cached information in the superblock) but not by 1.8. This patch fixes 1.8 and 1.9 so they can now open these files, and will correct them if necessary. Also fix some potential (rare) problems with array datatype versions. Tested: jam (parallel; h5committest not working on linew or smirom)
* [svn-r16519] merge 16518 from trunkPedro Vicente Nunes2009-02-261-3/+5
| | | | | | have 2 expected outputs for 2 h5ls runs depending if run on a big or little endian machine. Configure.in was modified to export a variable carrying endianess information to testh5ls.sh. This script then compares the current run with 2 expected outputs, one for a big-endian machine (linew was used to generate the output), other for little endian (jam was used to generate the output) the way h5ls prints types, it starts searching for NATIVE types first. One solution would be h5ls not to detect these native types, using for example the same print datatype function that h5dump does, that would make the output look the same on all platforms ("32-bit little-endian integer" would be printed instead). Drawback, this "native" information would not be available. Other solution is to have not one but 2 expected outputs and make the shell script detect the endianess and compare with one output or other tested: jam, linew
* [svn-r16463] merge from trunkPedro Vicente Nunes2009-02-111-0/+2
| | | | | | | | | | | | | | | | | | | | Bug fix: for compound types, the not comparable test for members was not done Solution: for compound types, recursively apply that check Two new cases are added 1) the compound type has a different number of members. Message printed is <obj1> has X members <obj2> has Y members Where X and Y are the number of members of each compound type being compared 2) the compound type has not comparable types (for example a double and an int at the same index) In this case the message Comparison not possible: object1 is of class1 and object2 is of class2 Is replaced with Comparison not possible: object1 has a class1 and object2 has a class2 Modified the test generator program to have these 2 cases Added a shell run for these 2 cases Tested: h5committest
* [svn-r16402] Description:Quincey Koziol2009-02-031-0/+1
| | | | | | | | | | | Bring r16401 back from trunk: Correct error introduced in r16353 with layout version, and add test so it gets caught earlier. Tested on: FreeBSD/32 6.3 (duty) Too minor to require h5committest
* [svn-r16351] merge 16348Pedro Vicente Nunes2009-01-261-0/+8
| | | | | | | | #1368 (E1) h5diff: implement "not comparable" messages. Implemented RFC. The new option is <-c, --compare List objects that are not comparable> added some test cases tested: windows, linux
* [svn-r16310] merge 16299Pedro Vicente Nunes2009-01-141-0/+3
| | | | | | | | | | | Print a message of Storage: information not available When displaying storage information for VL and dataset region types Added 2 shell runs that display this information #818 Tested: windows, linux
* [svn-r16216] Updated for removed file.Albert Cheng2008-12-231-1/+0
| | | | Tested by bin/chkmanifest.
* [svn-r16205] Description:Quincey Koziol2008-12-181-0/+1
| | | | | | | | | | | Bring r16204 back from trunk: Moved v1 B-tree debugging routines into separate module and thinned out header files a bit. Tested on: FreeBSD/32 6.3 (duty) in debug mode Too minor to require h5committest
* [svn-r16203] Maintenance: Added new VMS command file to the MANIFEST file.Elena Pourmal2008-12-161-0/+1
| | | | Platforms tested: My MAC with the chkmanifest script.
* [svn-r16198] Description:Scot Breitenfeld2008-12-151-1/+0
| | | | | Removed the fortran file: ./fortran/src/H5fortran_flags.f90 which is no longer needed.
* [svn-r16181] Description:Quincey Koziol2008-12-111-1/+1
| | | | | | | | | | | | Bring r16180 back from trunk: Rename the current chunk indexing routines module for B-tree indices to better reflect their purpose, and to make the upcoming extensible array index module fit in better. Tested: FreeBSD/32 6.3 Too minor to require h5committest
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