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* [svn-r9955] Purpose:Quincey Koziol2005-02-081-0/+1
| | | | | | | | | | | | | | New feature & bug fix Description: Allow h5debug tool to dump "test" v2 B-trees correctly. Also, fix incorrect parameter passing that was causing failures on various platforms. Platforms tested: FreeBSD 4.11 (sleipnir) AIX 5.2 (copper)
* [svn-r9939] Purpose:Quincey Koziol2005-02-041-0/+1
| | | | | | | | | | | | | New feature Description: Expand v2 B-tree code to support splitting the root node when enough records are inserted and move metadata cache callbacks into their own source file. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor for h5committest
* [svn-r9932] Updated with the newly added testph5diff.sh file.Albert Cheng2005-02-041-0/+1
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* [svn-r9928] Purpose:Quincey Koziol2005-02-031-0/+6
| | | | | | | | | | | | | New feature Description: Add basic code for new B-tree implementation. They don't do much yet, aren't hooked up to anything yet and the format may change, but I'd like to start getting them into the daily tests. Platforms tested: FreeBSD 4.11 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r9906] Purpose:James Laird2005-02-011-0/+2
| | | | | | | | | | | | | Bug fix Description: Two files in the bin directory didn't make it into CVS. Solution: Added depcomp and compile to CVS repository. Platforms tested: Already testsed with these files.
* [svn-r9902] Purpose:James Laird2005-02-011-46/+52
| | | | | | | | | | | | | | | Configuration feature Description: HDF5 now uses automake to generate Makefiles Solution: Makefile.in files are now generated from Makefile.am files. To reconfigure (after chaning a Makefile.am or configure.in): /bin/sh bin/reconfigure.sh Platforms tested: Many
* [svn-r9884] Purpose:Pedro Vicente Nunes2005-01-291-0/+1
| | | | | | | | | | | | | | | bug fix I forgot to add one file to cvs Description: Solution: Platforms tested: linux Misc. update:
* [svn-r9883] Purpose:Pedro Vicente Nunes2005-01-291-0/+2
| | | | | | | | | | | | | | | | | | | | | added a first batch of dimension scales fix some small bubgs in lite (a close function was not being called ) Description: this batch contains the basic API functions described in the RFC and a minimal test file Solution: Platforms tested: linux solaris 64 AIX windows Misc. update:
* [svn-r9881] Purpose:Pedro Vicente Nunes2005-01-281-2/+2
| | | | | | | | | | | | | | | | | changed the name of the hl table files back to H5TB.c and H5TB.h this can be done now because the H5TB.c (threaded binary trees) file was removed from the hdf5 library Description: Solution: Platforms tested: linux Misc. update:
* [svn-r9873] Updated with newly added file.Albert Cheng2005-01-261-0/+1
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* [svn-r9857] Purpose: MaintenanceElena Pourmal2005-01-221-15/+0
| | | | | | | | | | | | | | Description: Removed PABLO from the source Solution: Platforms tested: arabica with 64-bit, copper with parallel, heping with GNU C and C++ and PGI fortran (but I disabled hl, there is some weird problem only on heping: F9XMODFLAG is not propagated to the Makefile files Misc. update:
* [svn-r9843] Purpose:Xuan Bai2005-01-201-0/+1
| | | | | | | | | | | | A new configuration file hdf5/config/i686-pc-cygwin is add for HDF5 on Cygwin. So MANIFEST should be updated to include this file. Description: Solution: Platforms tested: Misc. update:
* [svn-r9778] Purpose:Quincey Koziol2005-01-081-3/+0
| | | | | | | | | | | | | | | Remove feature Description: Retire threaded, balanced binary tree code from HDF5 use. Requiescat in pace... Also, regenerate dependencies files. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Too minor to require full h5committesting (the code is already disconnected from everything except its tests)
* [svn-r9772] Purpose:MuQun Yang2005-01-071-0/+1
| | | | | | | | | | | | A new file called H5Znbit.c is added in, should be reflected from MANIFEST. Description: Solution: Platforms tested: Misc. update:
* [svn-r9727] Purpose:Quincey Koziol2004-12-291-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
* [svn-r9707] Updated with new added timekeeper.Albert Cheng2004-12-231-0/+1
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* [svn-r9686] Purpose:John Mainzer2004-12-181-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Modify the cache code (H5C) to support automatic cache resizing to adapt to the work load at run time. Description: Different applications require different sized caches to maintain an acceptable hit rate. This set of changes attempts to provide the ability to adjust to circumstances automatically. Solution: Added highly configurable code to allow the user to either set a fixed cache size, or allow the cache to grow and shrink according to conditions. If enabled, cache size increases are triggered when the hit rate drops below a user specified threshold in a user specified interval. Cache size reductions (if enabled) are triggered when either the hit rate exceeds some user specified threshold over a user specified interval, when the cache contains "enough" entries that haven't been accessed for a user specified interval, or some mix of the above. See the header comments on the H5C_auto_size_ctl_t structure in H5Cprivate.h for further details. At present, the cache resize configuration options are not accessible via the user API. Must add this. Platforms tested: h5committested, hepingi (serial), and copper (parallel) Misc. update:
* [svn-r9684] Purpose:Quincey Koziol2004-12-171-0/+1
| | | | | | | | | | | | | | Port Description: Initial work for supporting GNU FORTRAN/F95 on FreeBSD. I think I've got things mostly set up correctly, but I'm getting an internal compiler error on one of the FORTRAN sources, so I'm not going to add this configuration to the daily tests yet. Platforms tested: FreeBSD 4.10 (sleipnir) w/GNU FORTRAN Not tested in h5committest
* [svn-r9678] Purpose:Albert Cheng2004-12-161-0/+1
| | | | Updated with added bin/deploy entry
* [svn-r9675] Purpose:Albert Cheng2004-12-151-0/+1
| | | | Updated with the new entry of data transform report.
* [svn-r9644] Purpose:Pedro Vicente Nunes2004-12-081-0/+19
| | | | | | | | | | | | | | | | | add hl fortran Description: Solution: Platforms tested: linux (absfot and pgf90) solaris (32 and 64 bit) AIX note : HP gives a compiling error , to be fixed in the future Misc. update:
* [svn-r9639] Updated with the newly added file.Albert Cheng2004-12-071-0/+1
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* [svn-r9580] Purpose:Quincey Koziol2004-11-271-0/+3
| | | | | | | | | | | | | | | | | | | | Add new internal data structure Description: Add an implementation of skip lists to the library (see comment in src/H5SL.c for references to the papers describing them) as a potential replacement for our current threaded, balanced binary tree container. Skip lists are much simpler to implement and should be faster to use. Also, added new error codes to release branch, so bump the minor version number to indicate that the library is no longer perfectly compatible with the 1.6.3 release. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) Too minor to require further testing (the skip lists aren't actually used by any library code yet)
* [svn-r9562] Purpose:Pedro Vicente Nunes2004-11-231-1/+0
| | | | | | | | | | | | | | | | bug fix Description: the Makefile.in of the hl tests was not including a "srcdir" include path the test table .c file was missing also the srcdir path Solution: add it Platforms tested: Misc. update:
* [svn-r9558] Purpose:Pedro Vicente Nunes2004-11-221-0/+21
| | | | | | | | | | | | | | | | | | | | | | | | | | insert high level library into main library Description: configure.in has a new entry (--enable-hl, disable-hl) it is on by default the configure message prints info regarding if hl is enabled or not the tree is /hl /hl/src /hl/test Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r9549] updated with new file entry.Albert Cheng2004-11-181-0/+1
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* [svn-r9525] Purpose:Albert Cheng2004-11-121-0/+1
| | | | | | | updated for added dtransform example. Platforms tested: bin/chkmanifest.
* [svn-r9522] Purpose:MuQun Yang2004-11-111-0/+1
| | | | | | | | | | | | Add filename for MPI derived datatype test code. Description: Solution: Platforms tested: Misc. update:
* [svn-r9512] Purpose:MuQun Yang2004-11-051-2/+2
| | | | | | | | | | | | | Adding new names for windows installation docs, remove old names Description: Solution: Platforms tested: Misc. update:
* [svn-r9493] Purpose:Robert E. McGrath2004-11-021-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fix SZIP filter to dynmically detect encoder. Description: Solution: See: http://hdf.ncsa.uiuc.edu/RFC/SZIP/Szip_dynamic_12_Oct.pdf Platforms tested: verbena, arabica, cobalt. Note RE testing: All automatic tests work as before. The feature is a configuration thing, so the tests are manual. Tested with the following configs: pre-release version of SZIP, with dynamic library, 1. no SZIP 2. SZIP, decoder only 3. SZIP, encoder+decoder released (static lib) SZIP 4. no SZIP 5. SZIP, decoder only 6. SZIP, encoder+decoder after build, switch szip in LD_LIBRARY_PATH at run time 7. SZIP decoder 8. SZIP encoder Misc. update: Manifest updated
* [svn-r9436] Purpose:Pedro Vicente Nunes2004-10-191-1/+0
| | | | | | | | | | | | | | | | | | | | | bug fix Description: Description: one case was not handled in the combination of input options (layout and filters) Solution: redo the algorythm that handles all cases Solution: Platforms tested: linux Misc. update:
* [svn-r9384] Purpose:Quincey Koziol2004-10-091-0/+4
| | | | | | | | | | | | | | | | | | | | | | | Refactor and update fortran configuration Description: Changed configure.in to include the production, debugging and profiling flags for FORTRAN in the command line. Added '-flags' files for PGI and Intel C compilers Added '-fflags' files for PGI and Intel FORTRAN compilers Updated 'gnu-flags' file for GNU C compiler to not modify compiler flags when gcc is not being used. Make detection of the correct FORTRAN compiler a bit smarter for Linux platforms. (And carried over some of the minor changes to other affected machines) Platforms tested: Linux 2.4 (tungsten) w/PGI and Intel C & FORTRAN compilers. Changes not tested by h5committest
* [svn-r9373] Purpose:Quincey Koziol2004-10-061-0/+1
| | | | Update manifest with new file.
* [svn-r9354] Purpose:Quincey Koziol2004-10-011-0/+2
| | | | | | | | | | | | | | | | Bug fix & code cleanup Description: More dataset cleanups to get to a point where we can fix the chunked I/O bug. Also fix a couple of errors in the recent file object resurrection changes which should hopefully address the recent daily test failres (H5T.c) Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) h5committest
* [svn-r9347] Purpose:Frank Baker2004-09-301-0/+1
| | | | Adding hdf5/doc/html/PSandPDF/process.txt.
* [svn-r9344] Purpose:Quincey Koziol2004-09-301-1/+0
| | | | Update manifest list.
* [svn-r9137] Purpose:Pedro Vicente Nunes2004-08-231-0/+1
| | | | | | | | | | | | | | | | | | new test Description: added a test that generates and copies a file with a dataset with fill value (this is to test the property list function H5Pequal) Solution: Platforms tested: linux solaris aix Misc. update:
* [svn-r9059] Purpose:MuQun Yang2004-08-111-1/+0
| | | | | | | | | | | | remove the line with all_withf90.zip. Description: Solution: Platforms tested: Misc. update:
* [svn-r9047] Purpose: Adding fileBinh-Minh Ribler2004-08-071-0/+1
| | | | | Description Added file c++/src/H5CppDoc.h.
* [svn-r9034] Purpose:Quincey Koziol2004-08-061-0/+1
| | | | Update manifest with missing h5jam Dependencies file.
* [svn-r9020] Purpose:Robert E. McGrath2004-08-051-0/+17
| | | | | | | | | | | | | Updating for jam utility Description: See previous checkin Solution: Platforms tested: Misc. update:
* [svn-r8987] Purpose:Quincey Koziol2004-08-021-36/+22
| | | | | | | | | | | | Code cleanup Description: Fix another batch of minor differences between the development and release branches. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8932] Purpose:Quincey Koziol2004-07-221-0/+1
| | | | | | | | | | | | | | | | | | | | Code cleanup Description: Clean up collective chunking code a bit. Also, add '--enable-instrument' configure flag to have a mechanism for determining that optimized operations happened correctly in the library (instead of just the "normal" way) by allowing 'flag' properties to be set outside the library and set when the "right" thing happens. This is mainly for debugging and regression checks, so we make certain we don't break optimized I/O by accident. It's enabled by default when --enable-debug is on (which is on by default in the development branch and off by default in the release branch), but can also be independently controlled with its own configure flag. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel IBM p690 (copper) w/parallel
* [svn-r8910] Purpose:MuQun Yang2004-07-201-0/+1
| | | | | | | | | | | | Add t_coll_chunk.c at testpar for collective chunk IO test. Description: Solution: Platforms tested: Misc. update:
* [svn-r8904] Purpose:Pedro Vicente Nunes2004-07-201-1/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | h5diff and h5repack changes Description: h5diff introduced the following four modes of output: Normal mode: print the number of differences found and where they occured Report mode: print the above plus the differences Verbose mode: print the above plus a list of objects and warnings Quiet mode: do not print output (h5diff always returns an exit code of 1 when differences are found) h5repack added an extra parameter for SZIP filter (coding method) the new syntax is -f SZIP=<pixels per block,coding> (pixels per block is a even number in 2-32 and coding method is 'EC' or 'NN') Example of use: ./h5repack -i file1 -o file2 -f SZIP=8,NN -v updated usage messages, test scripts and files accordingly Solution: Platforms tested: linux AIX solaris Misc. update:
* [svn-r8877] James Laird2004-07-141-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | Purpose: Bug Fix Description: If an HDF5 file grows larger than its address space, it dies and is unable to write any data. This is more likely to happen since users are able to change the number of bytes used to store addresses in the file. Solution: HDF5 now throws an error instead of dying. In addition, it "reserves" address space for the local heap and for object headers (which do not allocate space immediately). This ensures that after the error occurs, there is enough address space left to flush the entire file to disk, so no data is lost. A more complete explanation is at /doc/html/TechNotes/ReservedFileSpace.html Platforms tested: sleipnir, copper (parallel), verbena, arabica, Windows (Visual Studio 7) Solution: Platforms tested: Misc. update:
* [svn-r8869] Purpose:Pedro Vicente Nunes2004-07-131-2/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | h5repack changes Description: there were some requests to change some minor h5repack features h5repack only made a warning about a non available filter in verbose mode ( -v ) without -v it kept silent, and users sometimes missed this warning the request was that it should print this warning always. so, the new format, is e.g ./h5repack -i test_szip.h5 -o out.h5 Warning: dataset </dset_szip> cannot be read, SZIP filter is not available due to this, and to avoid a lot of these messages in the shell test script, I modified the script h5repack.sh so that it detects the presence of all filters in the environment (previously it only detected SZIP) the test files were also divided in more files , to make the script code easier to follow Solution: Platforms tested: linux AIX (no szip) solaris (no szip, no gzip ) Misc. update:
* [svn-r8852] Purpose:Pedro Vicente Nunes2004-07-091-3/+1
| | | | | | | | | | | | | | | | h5dump new tests Description: added new tests for the print of array indices (nested objects, several ranks) Solution: Platforms tested: linux AIX solaris Misc. update:
* [svn-r8844] Purpose:Quincey Koziol2004-07-091-0/+2
| | | | | | | | | | | | | | | | | | Bug fix Description: The "shared" raw B-tree node can get freed before all the B-tree nodes had been flushed out to disk and released by the cache. Solution: Implement a simple reference counting wrapper for objects in the library and use it to hold the shared raw B-tree nodes so they aren't freed before all references to them in memory are released. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) IRIX64 6.5 (modei4)
* [svn-r8826] Purpose:Pedro Vicente Nunes2004-07-071-0/+2
| | | | | | | | | | | | | | | | | | h5dump new tests Description: added more tests for the escape/not escape feature for string data (with vlen, with compound, with char data) Solution: Platforms tested: linux solaris AIX Misc. update:
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