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* [svn-r26314] Brought autotools related changes from the trunk to the branch, ↵Scot Breitenfeld2015-02-261-0/+2
| | | | r26188 r26280
* [svn-r26298] merge 26279 from trunk.Mohamad Chaarawi2015-02-251-0/+2
| | | | | | HDFFV-883: attach callback to terminate HDF5 library when MPI_COMM_SELF is destroyed on MPI_Finalize. tested h5committest.
* [svn-r26237] Updated the MANIFEST file after deleting VMS support files.Dana Robinson2015-02-191-50/+0
| | | | Tested on: bin/chkmanifest
* [svn-r25947] [merged changes from trunk r25940]Albert Cheng2015-01-041-2/+2
| | | | | | | | | | | | | | | | | | | | | | | HDFFV-9046: reorganize hdf5/perform, step 2 Move timing measurement routines used by h5perf and h5perf_serial to tools/lib so that they can be used by other tools too. tools/lib/io_timer.c tools/lib/io_timer.h tools/perform/io_timer.c tools/perform/io_timer.h renamed perform/io_timer.[ch] to lib/io_timer.[ch] tools/lib/Makefile.am tools/lib/Makefile.in tools/lib/CMakeLists.txt tools/perform/Makefile.in tools/perform/Makefile.am tools/perform/CMakeLists.txt MANIFEST updated due to the move. Tested; h5committest and jam (serial)
* [svn-r25945] [merge changes r25932 and r25933 from Trunk]Albert Cheng2015-01-031-4/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | HDFFV-8902: merge the source code of h5perf and h5perf_serial, stage 1. tools/perform/sio_timer.h: tools/perform/pio_timer.c: tools/perform/io_timer.h: tools/perform/io_timer.c: Renamed pio_timer.[ch] as io_timer.[ch]; merged content of sio_timer.[ch] into io_timer.[ch] so that both h5perf and h5perf_serial call the combined io_timer.[ch]. Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs. Screened out set_timer_type() and get_timer_type() which were not used by any code. tools/perform/Makefile.am: tools/perform/Makefile.in: tools/perform/CMakeLists.txt Adjusted to use io_timer.c for both h5perf and h5perf_serial. tools/perform/pio_perf.c: tools/perform/sio_perf.c: tools/perform/pio_perf.h: tools/perform/sio_perf.h: Renamed [sp]io_time_destory() to same io_time_destroy(); Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs. tools/perform/pio_engine.c: tools/perform/sio_engine.c: Removed #include io_timer.h since it was already #include by [sp]io_perf.h. MANIFEST: Updated the merge of [sp]io_timer.[ch] into io_timer.[ch]. Tested: h5committest and jam in extra.
* [svn-r25914] HDFFV-8156: retired benchpar.c.Albert Cheng2014-12-191-1/+0
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* [svn-r25901] HDFFV-9046: reorganize hdf5/perform/ directory Albert Cheng2014-12-191-30/+30
| | | | | | Moved perform/ to tools/perform. Updated all the configure related files for the new location. Tested: h5committested plus tested in jam and kite.
* [svn-r25774] Add new files to MANIFEST.Larry Knox2014-11-041-0/+5
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* [svn-r25494] Add the genltanalyse script to bin and the reconfigure. hl/src ↵Allen Byrne2014-07-301-0/+1
| | | | files previously committed.
* [svn-r25490] bring 25468 from trunk. Mohamad Chaarawi2014-07-291-0/+1
| | | | | | | Aligning code with changes made in VOL branch. This will make porting non VOL related changes from trunkto the 1.8 branch much easier. tested h5commitest.
* [svn-r25433] Brought changes from the trunk into the branch.Scot Breitenfeld2014-07-181-0/+4
| | | | | | | | | | | | | | | For the top level, brings in changes for configure.ac, configure and the MANIFEST: svn merge -c25286 https://svn.hdfgroup.uiuc.edu/hdf5/trunk . svn merge -c25287 https://svn.hdfgroup.uiuc.edu/hdf5/trunk . svn merge -c25290 https://svn.hdfgroup.uiuc.edu/hdf5/trunk . For the fortran level: 384 17:00 svn merge -r25235:25272 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran 389 17:01 svn merge -r25284:25432 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran For the fortran merges, I skipped changes relating to hyperslab selection since the C source has not been merged from the trunk yet. These changes should be in place in the fortran source when the C source is merged to the 1.8 branch.
* [svn-r25222] Merge cmake_ext_mod into 1.8Allen Byrne2014-05-271-25/+28
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* [svn-r25082] Bug HDFFV-8625, HDFFV-8639, HDFFV-8745:Albert Cheng2014-04-221-0/+6
| | | | | | | | | | | | | | | | | | | h5diff issues "unable to read attribute" error message when comparing two files Description: h5diff did not handle attributes of variable length strings correctly. It created the wrong memory type if one but not both compared attributes are of the variable strings type. It ended in H5Aread() failure. Solution: We decided to treat the case when one type is variable length string and the other is not as incomparable. That bypassed the above error. We still need to figure out the proper way, if possible, to compare variable string with non-variable string types. Tested: h5committested plus tested in Swallow (OS X 10.8).
* [svn-r25031] Purpose: Fix HDFFV-8737Binh-Minh Ribler2014-04-121-0/+2
| | | | | | | | | | | | | | | | Description: - Fixed a few comments that Doxygen gave warnings on. - Updated configuration file for Doxygen. - Removed stylesheet from configuration so Doxygen will use the default stylesheet and removed the CLANG-related lines to eliminate another error since we're not using that feature, so the lines should not present. (from cpp_doc_config) - Added missing images (merged from trunk-r24996 and r25019) Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r25027] Merged changes from the trunk to the branch,Scot Breitenfeld2014-04-121-0/+4
| | | | | | svn merge -r24929:25009 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran tested: jam (gnu)
* [svn-r25024] Description:Binh-Minh Ribler2014-04-121-0/+1
| | | | Added c++/test/tobject.cpp
* [svn-r24980] HDFFV-8290: Merge automake 1.14.1 changes from trunkAllen Byrne2014-04-071-0/+1
| | | | Tested: h5committest
* [svn-r24928] Purpose: Fix HDFFV-7907Binh-Minh Ribler2014-03-311-0/+1
| | | | | | | | | | | | | | | | | | | | | | Description: Added transform property list functions // Constructor creates a dataset transform property list. DSetMemXferPropList(const char* expression); // Sets data transform expression. void setDataTransform(const char* expression) const; void setDataTransform(const H5std_string& expression) const; // Gets data transform expression. ssize_t getDataTransform(char* exp, size_t buf_size=0) const; H5std_string getDataTransform() const; Added test file tdspl.cpp. Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) SunOS 5.11 (emu)
* [svn-r24906] Merge latest CMake changes from trunk.Allen Byrne2014-03-261-0/+1
| | | | Tested: local linux
* [svn-r24879] Description:Quincey Koziol2014-03-241-1/+0
| | | | Missed a file in the last checkin.
* [svn-r24878] Description:Quincey Koziol2014-03-241-3/+0
| | | | | | | | | | | | | | | | | | | | | Bring r24864 from trunk to 1.8 branch: Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial (daily tested on trunk)
* [svn-r24785] Description:Quincey Koziol2014-03-121-1/+0
| | | | | | | | | | | | | Bring r24769 & r24772 from trunk to 1.8 branch: Check in Mohamad's changes to support collective I/O on point selections, along with some other minor cleanups. Correct some dynamically sized arrays that fail on Windows. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel (And has been through the daily test regime on the trunk)
* [svn-r24746] Merge trunk revision 24744 from cmake branch includes;Allen Byrne2014-02-271-1/+9
| | | | | | HDFFV-8505: UD filter changes to remove filters in h5repack. Tested: local linux
* [svn-r24720] bring r24709 from trunk:Mohamad Chaarawi2014-02-181-2/+2
| | | | | | | rename H5V to H5VM since H5V is needed in the fastforward project for view objects. The addition of view objects in the fastforward project is expected to be brough into the trunk sometimes in the future, which is why we need to make this change.
* [svn-r24680] Remove acknowledgment file from install.Allen Byrne2014-02-031-1/+0
| | | | | | | Remove obsolete CPack.cmake file. Merge h5repack and h5mkgrp test folder changes from trunk. Tested: local linux
* [svn-r24654] HDFFV-8640: Remove XLATE_UTILITYAllen Byrne2014-01-281-1/+10
| | | | Update tools testfiles
* [svn-r24217] Description:Binh-Minh Ribler2013-09-291-0/+2
| | | | | | | Added ./c++/src/H5Location.cpp ./c++/src/H5Location.h Verified with bin/chkmanifest.
* [svn-r24213] Description:Binh-Minh Ribler2013-09-281-0/+9
| | | | | | | | | | | | | | Added ./c++/examples/h5tutr_cmprss.cpp ./c++/examples/h5tutr_crtatt.cpp ./c++/examples/h5tutr_crtdat.cpp ./c++/examples/h5tutr_crtgrpar.cpp ./c++/examples/h5tutr_crtgrp.cpp ./c++/examples/h5tutr_crtgrpd.cpp ./c++/examples/h5tutr_extend.cpp ./c++/examples/h5tutr_rdwt.cpp ./c++/examples/h5tutr_subset.cpp Verified with bin/chkmanifest
* [svn-r24205] Merge HDFFV-8513/8522 from trunk (via cmake branch), h5repack ↵Allen Byrne2013-09-261-0/+3
| | | | | | | | UD plugins. Also warning session fixes. Tested: CMake local linux
* [svn-r24106] Add help text tests for h5dump and h5repack to the linux ↵Allen Byrne2013-09-061-16/+18
| | | | | | scripts. HDFFV-8498 merge from trunk. Tested: local linux - cmake and autotools
* [svn-r24082] I added a new file hdf5/vms/tools/h5diff/remove_exit.sh but ↵Raymond Lu2013-08-281-0/+1
| | | | forgot to update MANIFEST.
* [svn-r24072] Merge trunk cmake changes to 1.8 branch. Allen Byrne2013-08-261-62/+96
| | | | | | | Also add default switch blocks to h5import. Merge h5dump any_path option from trunk. Tested: local linux
* [svn-r24024] JAVA-1714: CMake packaging for macs improvedAllen Byrne2013-08-191-0/+5
| | | | | | | HDFFV-7989: h5dump any_path and help text grouping Added cygwin-64 support Merged from trunk, tested local linux
* [svn-r24014] This checkin is a merge of the checkin for h5stat to the trunk ↵Vailin Choi2013-08-161-0/+17
| | | | | | | | | | | | (rev #23975-23977) + an additional bug fix-- A) Fix for HDFFV-1238: --Add 3 new options to allow users in setting threshold for small groups/datasets/attributes (tools/h5stat/h5stat.c) --Generate new test file for testing the new options (tools/h5stat/h5stat_gentest.c) --Add tests for the new options (tools/h5stat/testh5stat.sh.in) --Update expected output files (tools/h5stat/testfiles/*.ddl) B) Fix a bug in determining maximum dimension size for 1-D dataset in dataset_stats() (tools/h5stat/h5stat.c) C) Fix a bug when using opt_arg that is NULL for the new options.
* [svn-r23898] HDFFV-8476: Add optional arg to -A for excluding attributes.Allen Byrne2013-07-151-0/+2
| | | | | | Merged from trunk. Tested: local linux
* [svn-r23869] HDFFV-8302: replace (v)snprintf with _(v)snprintf for windows. ↵Allen Byrne2013-07-081-0/+4
| | | | | | | | Merge from trunk along with other windows functions and HD prefix corrections. HDFFV-8394: Add cmake code to package examples Tested: local linux
* [svn-r23771] HDFFV-8434,-8437,-8445,-8447,-8461: Merge changes from Trunk.Allen Byrne2013-06-141-0/+6
| | | | Tested: local linux
* [svn-r23702] Issue 8380 - H5Zunregister caused seg fault. This is a porting ↵Raymond Lu2013-05-141-0/+1
| | | | | | | | | of code from the trunk. It fixes the problem by first iterating through all opened datasets and groups to see if any of them uses the filter. If it finds one, the function fails with a message. Then the function flushes all opened files. Tested with h5committest.
* [svn-r23663] Bug fix: HDFFV-8236Albert Cheng2013-05-021-22/+26
| | | | | | | | | | | | | Some files are not distributed when release tarball is created by bin/release according to MANIFEST. But --enable-build-all compiles them in test/. Solution: Distributed those missing files for now. Need to resolve if these files should be distributed or not. And if not, fix --enable-build-all NOT to compile them. Tested: use bin/release to generate the tarball and run --enable-build-all with it. Error is gone and all passed.
* [svn-r23639] Removed INSTALL_MinGW because, Albert Cheng2013-04-261-1/+0
| | | | | | | | | 1. The file states that: NOTE: We are no longer actively supporting MinGW as of 1.8.5. 2. It is not tested for v1.8.11. 3. If we ever supports it again, it can be "restored" from previous release (e.g. v1.8.10).)
* [svn-r23625] Updated and renamed documentsAllen Byrne2013-04-251-3/+3
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* [svn-r23550] Description:Quincey Koziol2013-04-041-1/+1
| | | | | | | | | | Bring r23549 from trunk to desy_1_8 branch: More misc. cleanups, but main change is to make an "extern" header file for the plugin interface. Tested on: Mac OSX/64 10.8.3 (amazon)
* [svn-r23521] I merged the changes for testing groups with filter into this ↵Raymond Lu2013-04-021-0/+1
| | | | | | branch. Tested on jam and koala.
* [svn-r23510] I merged the changes for DESY project from the trunk (r23496) ↵Raymond Lu2013-04-011-0/+7
| | | | | | into this 1.8 DESY branch. Tested with h5committest (duck failed with CMake because I don't know how to change test/CMakeLists.txt. I'll wait for Allen to do it).
* [svn-r23362] -r23091 and 23093 from trunk.Scot Breitenfeld2013-03-171-0/+9
| | | | Tested: jam (intel)
* [svn-r23352] merged -r22826:23050 and -r23060:23351 from trunk into branch.Scot Breitenfeld2013-03-151-8/+13
| | | | Tested: jam (gnu, intel)
* [svn-r23301] Allen Byrne2013-02-181-22/+42
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* [svn-r23211] Merge trunk CMake changes for minimum cmake version of 2.8.10. ↵Allen Byrne2013-01-311-2/+1
| | | | | | This was prompted by HDFFV-8227, OS X requires latest version of cmake for proper support. Tested: local linux
* [svn-r23187] HDFFV-8169: Binary output of String types are wrongAllen Byrne2013-01-221-0/+2
| | | | | | Merge from trunk Add testfiles. Tested: local linux
* [svn-r23182] I'm merging the changes for DECTRIS project from the trunk ↵Raymond Lu2013-01-211-0/+5
| | | | | | (r23162). Tested on koala, jam, ostrich.
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