| Commit message (Collapse) | Author | Age | Files | Lines |
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r26188 r26280
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HDFFV-883: attach callback to terminate HDF5 library when MPI_COMM_SELF is destroyed on MPI_Finalize.
tested h5committest.
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Tested on: bin/chkmanifest
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HDFFV-9046: reorganize hdf5/perform, step 2
Move timing measurement routines used by h5perf and h5perf_serial to tools/lib
so that they can be used by other tools too.
tools/lib/io_timer.c
tools/lib/io_timer.h
tools/perform/io_timer.c
tools/perform/io_timer.h
renamed perform/io_timer.[ch] to lib/io_timer.[ch]
tools/lib/Makefile.am
tools/lib/Makefile.in
tools/lib/CMakeLists.txt
tools/perform/Makefile.in
tools/perform/Makefile.am
tools/perform/CMakeLists.txt
MANIFEST
updated due to the move.
Tested; h5committest and jam (serial)
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HDFFV-8902: merge the source code of h5perf and h5perf_serial, stage 1.
tools/perform/sio_timer.h:
tools/perform/pio_timer.c:
tools/perform/io_timer.h:
tools/perform/io_timer.c:
Renamed pio_timer.[ch] as io_timer.[ch];
merged content of sio_timer.[ch] into io_timer.[ch] so that both h5perf and h5perf_serial
call the combined io_timer.[ch].
Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs.
Screened out set_timer_type() and get_timer_type() which were not used by any code.
tools/perform/Makefile.am:
tools/perform/Makefile.in:
tools/perform/CMakeLists.txt
Adjusted to use io_timer.c for both h5perf and h5perf_serial.
tools/perform/pio_perf.c:
tools/perform/sio_perf.c:
tools/perform/pio_perf.h:
tools/perform/sio_perf.h:
Renamed [sp]io_time_destory() to same io_time_destroy();
Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs.
tools/perform/pio_engine.c:
tools/perform/sio_engine.c:
Removed #include io_timer.h since it was already #include by [sp]io_perf.h.
MANIFEST:
Updated the merge of [sp]io_timer.[ch] into io_timer.[ch].
Tested: h5committest and jam in extra.
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Moved perform/ to tools/perform. Updated all the configure related files for the new location.
Tested: h5committested plus tested in jam and kite.
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files previously committed.
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Aligning code with changes made in VOL branch. This will make porting
non VOL related changes from trunkto the 1.8 branch much easier.
tested h5commitest.
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For the top level, brings in changes for configure.ac, configure and the MANIFEST:
svn merge -c25286 https://svn.hdfgroup.uiuc.edu/hdf5/trunk .
svn merge -c25287 https://svn.hdfgroup.uiuc.edu/hdf5/trunk .
svn merge -c25290 https://svn.hdfgroup.uiuc.edu/hdf5/trunk .
For the fortran level:
384 17:00 svn merge -r25235:25272 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
389 17:01 svn merge -r25284:25432 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
For the fortran merges, I skipped changes relating to hyperslab selection since the C source has not been merged from the trunk yet. These changes should be in place in the fortran source when the C source is merged to the 1.8 branch.
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h5diff issues "unable to read attribute" error message when comparing
two files
Description:
h5diff did not handle attributes of variable length strings
correctly. It created the wrong memory type if one but not both
compared attributes are of the variable strings type. It ended in
H5Aread() failure.
Solution:
We decided to treat the case when one type is variable length string
and the other is not as incomparable. That bypassed the above error.
We still need to figure out the proper way, if possible, to compare
variable string with non-variable string types.
Tested: h5committested plus tested in Swallow (OS X 10.8).
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Description:
- Fixed a few comments that Doxygen gave warnings on.
- Updated configuration file for Doxygen.
- Removed stylesheet from configuration so Doxygen will use the default
stylesheet and removed the CLANG-related lines to eliminate another
error since we're not using that feature, so the lines should not
present. (from cpp_doc_config)
- Added missing images
(merged from trunk-r24996 and r25019)
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
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svn merge -r24929:25009 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
tested: jam (gnu)
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Added c++/test/tobject.cpp
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Tested: h5committest
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Description:
Added transform property list functions
// Constructor creates a dataset transform property list.
DSetMemXferPropList(const char* expression);
// Sets data transform expression.
void setDataTransform(const char* expression) const;
void setDataTransform(const H5std_string& expression) const;
// Gets data transform expression.
ssize_t getDataTransform(char* exp, size_t buf_size=0) const;
H5std_string getDataTransform() const;
Added test file tdspl.cpp.
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
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Tested: local linux
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Missed a file in the last checkin.
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Bring r24864 from trunk to 1.8 branch:
Remove all traces of MPI-POSIX VFD and GPFS detection/code.
Remove remaining traces of stream VFD.
Remove testpar/t_posix_compliant test (it's not actually verifying anything).
Clean up H5D__mpio_opt_possible() further.
Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).
A few other small code cleanups.
Tested on:
Mac OSX/64 10.9.2 (amazon) w/parallel & serial
(daily tested on trunk)
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Bring r24769 & r24772 from trunk to 1.8 branch:
Check in Mohamad's changes to support collective I/O on point selections,
along with some other minor cleanups.
Correct some dynamically sized arrays that fail on Windows.
Tested on:
Mac OSX/64 10.9.2 (amazon) w/parallel
(And has been through the daily test regime on the trunk)
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HDFFV-8505: UD filter changes to remove filters in h5repack.
Tested: local linux
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rename H5V to H5VM since H5V is needed in the fastforward project for
view objects. The addition of view objects in the fastforward project
is expected to be brough into the trunk sometimes in the future, which
is why we need to make this change.
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Remove obsolete CPack.cmake file.
Merge h5repack and h5mkgrp test folder changes from trunk.
Tested: local linux
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Update tools testfiles
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Added
./c++/src/H5Location.cpp
./c++/src/H5Location.h
Verified with bin/chkmanifest.
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Added
./c++/examples/h5tutr_cmprss.cpp
./c++/examples/h5tutr_crtatt.cpp
./c++/examples/h5tutr_crtdat.cpp
./c++/examples/h5tutr_crtgrpar.cpp
./c++/examples/h5tutr_crtgrp.cpp
./c++/examples/h5tutr_crtgrpd.cpp
./c++/examples/h5tutr_extend.cpp
./c++/examples/h5tutr_rdwt.cpp
./c++/examples/h5tutr_subset.cpp
Verified with bin/chkmanifest
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UD plugins.
Also warning session fixes.
Tested: CMake local linux
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scripts. HDFFV-8498 merge from trunk.
Tested: local linux - cmake and autotools
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forgot to update MANIFEST.
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Also add default switch blocks to h5import.
Merge h5dump any_path option from trunk.
Tested: local linux
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HDFFV-7989: h5dump any_path and help text grouping
Added cygwin-64 support
Merged from trunk, tested local linux
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(rev #23975-23977) + an additional bug fix--
A) Fix for HDFFV-1238:
--Add 3 new options to allow users in setting threshold for small groups/datasets/attributes (tools/h5stat/h5stat.c)
--Generate new test file for testing the new options (tools/h5stat/h5stat_gentest.c)
--Add tests for the new options (tools/h5stat/testh5stat.sh.in)
--Update expected output files (tools/h5stat/testfiles/*.ddl)
B) Fix a bug in determining maximum dimension size for 1-D dataset in dataset_stats() (tools/h5stat/h5stat.c)
C) Fix a bug when using opt_arg that is NULL for the new options.
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Merged from trunk.
Tested: local linux
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Merge from trunk along with other windows functions and HD prefix corrections.
HDFFV-8394: Add cmake code to package examples
Tested: local linux
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Tested: local linux
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of code from the trunk. It fixes the problem by first iterating
through all opened datasets and groups to see if any of them uses the filter. If it finds one, the function fails with a message.
Then the function flushes all opened files.
Tested with h5committest.
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Some files are not distributed when release tarball is created by bin/release
according to MANIFEST. But --enable-build-all compiles them in test/.
Solution:
Distributed those missing files for now. Need to resolve if these files
should be distributed or not. And if not, fix --enable-build-all NOT to
compile them.
Tested: use bin/release to generate the tarball and run --enable-build-all with
it. Error is gone and all passed.
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1. The file states that:
NOTE:
We are no longer actively supporting MinGW as of 1.8.5.
2. It is not tested for v1.8.11.
3. If we ever supports it again, it can be "restored" from previous
release (e.g. v1.8.10).)
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Bring r23549 from trunk to desy_1_8 branch:
More misc. cleanups, but main change is to make an "extern" header file
for the plugin interface.
Tested on:
Mac OSX/64 10.8.3 (amazon)
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branch.
Tested on jam and koala.
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into this 1.8 DESY branch.
Tested with h5committest (duck failed with CMake because I don't know how to change test/CMakeLists.txt. I'll wait for Allen to do it).
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Tested: jam (intel)
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Tested: jam (gnu, intel)
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This was prompted by HDFFV-8227, OS X requires latest version of cmake for proper support.
Tested: local linux
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Merge from trunk
Add testfiles.
Tested: local linux
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(r23162).
Tested on koala, jam, ostrich.
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