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* Merge pull request #1543 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-02-141-6/+19
|\ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'f4f8be19125002764715f6cd25372477c729f809': Script changes from develop Added TRILABS-111 note Add HDFFV-10628 known problem TRILAB-111 Update MPI CMake
| * TRILAB-111 Update MPI CMakeAllen Byrne2019-02-131-6/+19
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* | Re-write of Java JNI error handlingJordan Henderson2019-02-141-0/+26
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* Remove obsolete fileAllen Byrne2019-02-061-1/+0
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* Renamed data fileBinh-Minh Ribler2019-02-011-1/+1
| | | | | | | | | Description: Renamed data file with long name to a shorter name. Revised an entry in RELEASE.txt Platforms tested: Linux/64 (jelly) Darwin (osx1010test)
* Merge branch 'hdf5_1_10' of ↵Binh-Minh Ribler2019-01-311-1/+0
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_1_10_bmr into hdf5_1_10
| * HDFFV-10686 revert H5Oget_info1 to H5Oget_info(H5Ovisit)Allen Byrne2019-01-241-1/+0
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* | Fixed HDFFV-10586, HDFFV-10588, and HDFFV-10684Binh-Minh Ribler2019-01-311-0/+1
|/ | | | | | | | | | | | | | | | | | | | | | | | | | Description: HDFFV-10586 CVE-2018-17434 Divide by zero in h5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix does not cover all cases, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. HDFFV-10684 H5Ewalk does not stop until all errors in the stack are visited The test for HDFFV-10588 has revealed a bug in H5Ewalk. H5Ewalk did not stop midway even when the call back function returns H5_ITER_STOP. This is because a condition is missing from the for loops in H5E__walk causing the callback functions unable to stop until all the errors in the stack are iterated. Quincey advised on the final fix. In this fix, "status" is switched to "ret_value" and HGOTO_ERROR to HERROR, and the for loops won't continue when "ret_value" is not 0. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
* Merge pull request #1442 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to ↵Vailin Choi2019-01-071-1/+2
|\ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '1a50622733c14d89b3fd8c6bab684af9205a3b96': Fix for daily test failure: too many arguments to function 'H5Gopen1'. Fix the git merge leftover in RELEASE.txt. Fix the git merge leftovers in RELEASE.txt. Fix for HDFFV-10659: The library aborts with "infinite loop closing library" after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
| * Fix for HDFFV-10659: The library aborts with "infinite loop closing library"Vailin Choi2019-01-061-1/+2
| | | | | | | | | | | | | | | | after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
* | Merge pull request #1447 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-01-071-0/+1
|\ \ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'f7d530dd275e176e59b26c1b7363ba16b3ab6c9c': HDFFV-10674, 10664, 10674
| * | HDFFV-10674, 10664, 10674Allen Byrne2019-01-071-0/+1
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* | Merged the rest of the parallel flush test code.Dana Robinson2019-01-071-0/+1
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* Remove files that do not exist in branchAllen Byrne2019-01-021-2/+0
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* Merge of logging framework updates.Dana Robinson2018-12-311-1/+3
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* Merge CMake changes from developAllen Byrne2018-12-201-0/+3
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* Manifest fixAllen Byrne2018-12-141-0/+2
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* HDFFV-10660,-10594 merge from developAllen Byrne2018-12-131-0/+9
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* HDFFV-10632 separate stderr and stdout in testsAllen Byrne2018-12-131-29/+36
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* Moved fixes for incorrectly installed header files to 1.10.Dana Robinson2018-12-061-6/+0
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* Merge CMake changes from developAllen Byrne2018-10-231-1/+2
| | | Improved cross-compiling and toolchains
* HDFFV-10575, 10332, 10531, 10594 and TRILAB-21Allen Byrne2018-10-041-0/+2
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* Merge pull request #1224 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developLarry Knox2018-08-281-0/+1
| | | | | | | | * commit '763b95c6b0f027025a5a5bfb203b77317ffa2368': Update RELEASE.txt with suggested changes Update MANIFEST file for new t_coll_md_read.c file Remove now-unused local variable Add fix for HDFFV-10501
* Adjust warning flags to match autotools, add configure statusAllen Byrne2018-08-211-0/+1
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* Add missing file and remove deletedAllen Byrne2018-07-271-2/+0
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* Add swmr tests, fix java scriptAllen Byrne2018-07-271-0/+5
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* Updated for C2Cppfunction_map.htmBinh-Minh Ribler2018-07-261-1/+1
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* Added class DSetAccPropListBinh-Minh Ribler2018-07-261-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Added class DSetAccPropList for the dataset access property list. - Added wrapper for H5Dget_access_plist to class DataSet // Gets the access property list of this dataset. DSetAccPropList getAccessPlist() const; - Added wrappers for H5Pset_chunk_cache and H5Pget_chunk_cache to class DSetAccPropList // Sets the raw data chunk cache parameters. void setChunkCache(size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0) // Retrieves the raw data chunk cache parameters. void getChunkCache(size_t &rdcc_nslots, size_t &rdcc_nbytes, double &rdcc_w0) - Added two more arguments to H5Location::createDataSet: const DSetAccPropList& dapl = DSetAccPropList::DEFAULT const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT - Added one more argument to H5Location::openDataSet: const DSetAccPropList& dapl = DSetAccPropList::DEFAULT Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* Modifications made based on feedback from pull request.Vailin Choi2018-07-261-0/+8
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* HDFFV-10519 Disable WriteVL JNI function, updgrade JNIAllen Byrne2018-06-291-3/+3
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* Fixed MANIFESTDana Robinson2018-06-011-2/+3
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-231-4/+36
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits) HDFFV-9739 only executes H5E tests in production Remove link flag from compile command fix typo Add release note Correct attribute location HDFFV-9739 fix copy testfiles command HDFFV-9739 remove obsolete test files HDFFV-9739 dup test file for concurrent tests HDFFV-9739 Fix autotools script HDFFV-9739 Change autotools test scripts Fix typo HDFFV-9739 Update test reference Update current windows test machines HDFFV-9739 Grab err number before API call HDFFV-9739 Add release note Adjust test names for concurrent tests Fix soversion HDFFV-9739 Fix copy name HDFFV-9739 factor out tests into separate JUnit Updated the threadsafety test to use error macros instead of asserts. ...
| * HDFFV-9739 remove obsolete test filesAllen Byrne2018-05-211-4/+0
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| * HDFFV-9739 factor out tests into separate JUnitAllen Byrne2018-05-151-0/+36
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* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Vailin Choi2018-05-141-0/+2
|\ \ | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits) GGC requires attribute before function Correct COMPILE defs usage Add missing module_dir property Text cleanup Correct sentence punctuation. Add release note. Use set_property for MT flag Correct command usage Remove APPEND Fix typo Add missing test lib add missing folder to path Fix another command revert Missed a command revert Revert to old style for LINK_FLAGS gen expr not working LINK_FLAGS must be separate property sets Fix link flags syntax Revert refactor link flags refactor link flags to interface Refactor link flags ...
| * TRILABS-20 Fix fortran configure during fix of CXX configureAllen Byrne2018-04-241-0/+2
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* | Fix for HDFFV-10180 Performance issues with H5Oget_info.Vailin Choi2018-04-241-0/+1
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* Add missing fileAllen Byrne2018-04-121-0/+1
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* Fix Java test for DEBUG_APISAllen Byrne2018-04-091-0/+2
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-03-181-14/+39
|\ | | | | | | | | | | merge_func_enter_vol Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
| * Merge pull request #931 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to ↵Vailin Choi2018-03-121-0/+23
| |\ | | | | | | | | | | | | | | | | | | | | | develop * commit 'f08b8fa10e7bac5ae26e3b06f938d38ebb3f28e1': Enhancement to the tool h5clear (HDFFV-10360) Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
| | * Enhancement to the tool h5clear (HDFFV-10360)Vailin Choi2018-03-121-0/+23
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| * | Remove obsolete filesAllen Byrne2018-03-121-7/+0
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| * | Updated MANIFEST for H5LcreatProp.[h,cpp]Binh-Minh Ribler2018-03-121-0/+2
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| * | HDFFV-4359 Add C,HL,CXX filesAllen Byrne2018-03-081-0/+2
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| * Merge pull request #901 in HDFFV/hdf5 from ↵Binh-Minh Ribler2018-03-071-0/+1
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/version_bounds_bmr:develop to develop tests for version bounds. * commit 'f05f9d4cffab5e008c67e19034c1b248e1b01b3c': Miscellaneous test fixes Description: - dtypes.c: added the use of highest version of nested datatypes to verify the datatype's version. - miscellaneous typos Platforms tested: Linux/64 (jelly) Darwin (osx1010test) Added h5repack tests Description: Added tests SUPERBLOCK and INVALIDBOUNDS, composed by ADB. Platforms tested: Linux/64 (jelly) - cmake Added bounds_latest_latest.h5 Misc improvement Description: - Added test file for h5repack test VERIFY_INVALIDBOUNDS - Updated MANIFEST - Removed unnecessary header file in test - Update h5repack script to copy the new file to the test location Platforms tested: Linux/64 (jelly) Darwin (osx1010test) Improving tests Description: - Added test for version bounds with nested datatypes - Added script for additional version bound test in h5repack - Cleaned up tests for consistency - Removed extra included header files Platforms tested: Linux/64 (jelly) Linux/64 (moohan) Darwin (osx1010test)
| | * Misc improvementBinh-Minh Ribler2018-02-281-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Added test file for h5repack test VERIFY_INVALIDBOUNDS - Updated MANIFEST - Removed unnecessary header file in test - Update h5repack script to copy the new file to the test location Platforms tested: Linux/64 (jelly) Darwin (osx1010test)
| * | Inc CMake min, Add new tests, rework test CMake filesAllen Byrne2018-02-271-0/+1
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| * Merge pull request #876 in HDFFV/hdf5 from ↵Vailin Choi2018-02-141-0/+1
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_hdf5_fork:bugfix/version_bounds to develop * commit 'b4294d8d3e5937527e9814f23d04df412ebbe770': Added comment for clarification about latest as 1.10. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Fixed typos Platforms tested: Linux/32 (jam) Additional tests Description: - Revised and add more variety to version bound tests per review - Revised gen_bounds.c per review Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test) Added gen_bounds Cleaned up per comments in PR# 876 Modifications made based on comments from pull request. Added gen_bounds.c Added gen_bounds.c Fix bounds check for the generation of cache image. Modify usage description for -j and -k options so that it is more informative. Modify h5repack usage so that it is more descriptive. Changes made based on code reviews. Further improvement Fixed comment. Adding data file generator Description: Added gen_bounds.c to generate the following files: - bounds_earliest_latest.h5 - bounds_earliest_v18.h5 - bounds_latest_latest.h5 - bounds_v18_latest.h5 - bounds_v18_v18.h5 for testing the version bounds fix in 1.8 and 1.6. Initial checkin for library version bounds Code changes to provide versioning support when adding to the enumerated defines for H5F_libver_t.
| | * Added gen_bounds.cBinh-Minh Ribler2018-02-011-0/+1
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