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* [svn-r6517] Elena Pourmal2003-03-211-0/+1
| | | | | | | | | | | | | | | Purpose: Bug fix. Description: When I added support for filters, I forgot to add fortan man pages file to the MANIFEST file. When I run chkmanifest, I discovered that there was also a typo ( ./dac/Makefile.in instead of ./doc/Makefile.in ) Solution: added ./doc/html/fortran/h5z_FORTRAN.html and chnages "a" to "o" Platforms tested: arabica with bin/chkmanifest Misc. update:
* [svn-r6511] Purpose:Binh-Minh Ribler2003-03-201-0/+1
| | | | Added config file c++/config/hpux11.00
* [svn-r6489] Elena Pourmal2003-03-191-0/+5
| | | | | | | | | | | | | | | | | | Purpose: Catching up with C library Description: Added new files for PGI compilers support on Linux 2.4 config/linux-gnuaout fortran/config/linux-gnuaout Added new source and test files for filters fortran/src/H5Zf.c fortran/src/H5Zff.f90 fortran/test/tH5Z.f90 Solution: Platforms tested: arabica(C and F90), burrwhite (pgcc and pgf90), modi4 (F90 and parallel) Misc. update:
* [svn-r6486] Purpose:Quincey Koziol2003-03-181-0/+2
| | | | | | | | | | | | | | | | Bug fix Description: "make distclean" is failing currently in the doc/html/ed_libs and doc/html/ed_styles directories for lack of a 'Dependencies' file. Solution: Add it. Platforms tested: FreeBSD 4.7 (sleipnir) Misc. update:
* [svn-r6480] Purpose:Bill Wendling2003-03-141-0/+2
| | | | | | Update Description: Added Makefile.ins for the new doc directories
* [svn-r6479] Frank Baker2003-03-141-0/+27
| | | | | | Purpose: Add stylesheet (doc/html/ed_styles/*) and DW library (doc/html/ed_libs/*) files to MANIFEST for HDF5 doc set DreamWeaver adaptation.
* [svn-r6463] Elena Pourmal2003-03-051-0/+1
| | | | | | | | | | | | Purpose: Maintenance Description: Added support for variable length datatypes. Solution: I added support for Fortran VL types to 1.4 branch before the hdf5-1.4.5 release. Now I am bringing changes back to the 1.5 branch Platforms tested: arabica (fortran), eirene (fortran), modi4 (parallel, fortran)
* [svn-r6436] Purpose:Quincey Koziol2003-02-241-0/+3
| | | | | | | | | | | | | New internal feature Description: Add internal API for building and working with heaps (H5HP). This will be used for the LRU algorithm in the new metadata cache code. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir)
* [svn-r6411] Purpose:Quincey Koziol2003-02-171-2/+1
| | | | | | | | | | | | | | | | | | | | | | Code cleanup Description: Clean up miscellaneous warnings which have crept into the code. Fix "_POSIX_C_SOURCE not defined" warning on FreeBSD. Adjust gcc compiler flags to be more concise for production mode. Refactor the H5O code so that there is a stronger boundary between code in the H5O package and code in the library which just calls H5O routines. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) serial & parallel and gcc 2.95.4 & gcc 3.2.2 Misc. update: Update MANIFEST if you add or remove any file.
* [svn-r6400] Raymond Lu2003-02-121-1/+1
| | | | | | | | | | | Purpose: Change feature Description: Switch to Fletcher32 from Adler32 checksum Platforms tested: arabica, eirene, modi4 Misc. update: MANIFEST and RELEASE.txt updated.
* [svn-r6395] Purpose:Quincey Koziol2003-02-121-0/+15
| | | | | | | | | | | | | | | | | | | | | | | Code cleanup. Description: Break up the ~9350 line H5T.c module into smaller pieces, which contain code for a particular feature or support for a datatype class. This should make the "main" H5T code (still in H5T.c) easier to support, as well as removing some of the "minor" routines from the user applications which don't use them (my rough estimates show about 4% reduction (~30K on a FreeBSD machine) in optimized, staticly-linked binaries for very simple programs) Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) Misc. update: Update MANIFEST
* [svn-r6383] Purpose:Quincey Koziol2003-02-071-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | New feature for developers. Description: Added "function stack" tracing to library. This allows developers (there is no public API) to call H5FS_print within the library and get a listing of the functions traversed to reach that point in the library. Eventually, I may add support for reporting the parameters to each function also... Mainly for debugging parallel I/O programs, but I think it will come in handy in other cases also. The function stack tracking is controlled with a configure switch: --enable-funcstack, which defaults to enabled currently. When we branch for 1.6, we should change the default setting on the branch to be disabled. Also, added a destructor to the thread-specific keys when thread-safety is turned on in the library. Otherwise, they were leaking memory and causing difficult to debug errors in threaded programs (like the test/ttsafe test). Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir) w/thread-safety enabled. Misc. update: Updated MANIFEST with new files added (src/H5FS.c & src/H5FDprivate.h) Update release_docs/RELEASE with thread-safety bug fix.
* [svn-r6382] Purpose:Quincey Koziol2003-02-071-0/+2
| | | | Update with missing files.
* [svn-r6378] Purpose:Bill Wendling2003-02-061-2/+3
| | | | | | | | | | | | Update Description: MANIFEST: - Added .autom4te.cfg and H5FDfphdf5.[ch] files. .autom4te.cfg - When the new versions of libtool/autoconf come out, this file will help get rid of the annoying autom4te.cache directory. Platforms tested: Linux
* [svn-r6376] Raymond Lu2003-02-041-0/+1
| | | | | Misc. update: Update MANIFEST to add H5Zadler32.c.
* [svn-r6326] Purpose:Pedro Vicente Nunes2003-01-231-0/+2
| | | | | | | added h5diff to CVS current version, options only work for float dataset type Platforms tested: windows, linux
* [svn-r6307] Purpose:Quincey Koziol2003-01-211-0/+2
| | | | | | | | | | | | | | | | | Bug fix Description: Currently, when the library encounters an object header message that isn't know, it fails to open that object in the file. Solution: Allow the library to skip over the unknown object header message and continue to process the remaining messages, in the hope that the skipped message isn't important later. If it is important, it will be caught at a higher level of the library. Platforms tested: FreeBSD 4.7 (sleipnir)
* [svn-r6264] Purpose:Quincey Koziol2003-01-101-0/+2
| | | | Update manifest with missing test files...
* [svn-r6252] Purpose:Quincey Koziol2003-01-091-1/+11
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Lots of performance improvements & a couple new internal API interfaces. Description: Performance Improvements: - Cached file offset & length sizes in shared file struct, to avoid constantly looking them up in the FCPL. - Generic property improvements: - Added "revision" number to generic property classes to speed up comparisons. - Changed method of storing properties from using a hash-table to the TBBT routines in the library. - Share the propery names between classes and the lists derived from them. - Removed redundant 'def_value' buffer from each property. - Switching code to use a "copy on write" strategy for properties in each list, where the properties in each list are shared with the properties in the class, until a property's value is changed in a list. - Fixed error in layout code which was allocating too many buffers. - Redefined public macros of the form (H5open()/H5check, <variable>) internally to only be (<variable>), avoiding innumerable useless calls to H5open() and H5check_version(). - Reuse already zeroed buffers in H5F_contig_fill instead of constantly re-zeroing them. - Don't write fill values if writing entire dataset. - Use gettimeofday() system call instead of time() system when checking the modification time of a dataset. - Added reference counted string API and use it for tracking the names of objects opening in a file (for the ID->name code). - Removed redundant H5P_get() calls in B-tree routines. - Redefine H5T datatype macros internally to the library, to avoid calling H5check redundantly. - Keep dataspace information for dataset locally instead of reading from disk each time. Added new module to track open objects in a file, to allow this (which will be useful eventually for some FPH5 metadata caching issues). - Remove H5AC_find macro which was inlining metadata cache lookups, and call function instead. - Remove redundant memset() calls from H5G_namei() routine. - Remove redundant checking of object type when locating objects in metadata cache and rely on the address only. - Create default dataset object to use when default dataset creation property list is used to create datasets, bypassing querying for all the property list values. - Use default I/O vector size when performing raw data with the default dataset transfer property list, instead of querying for I/O vector size. - Remove H5P_DEFAULT internally to the library, replacing it with more specific default property list based on the type of property list needed. - Remove redundant memset() calls in object header message (H5O*) routines. - Remove redunant memset() calls in data I/O routines. - Split free-list allocation routines into malloc() and calloc()- like routines, instead of one combined routine. - Remove lots of indirection in H5O*() routines. - Simplify metadata cache entry comparison routine (used when flushing entire cache out). - Only enable metadata cache statistics when H5AC_DEBUG is turned on, instead of always tracking them. - Simplify address comparison macro (H5F_addr_eq). - Remove redundant metadata cache entry protections during dataset creation by protecting the object header once and making all the modifications necessary for the dataset creation before unprotecting it. - Reduce # of "number of element in extent" computations performed by computing and storing the value during dataspace creation. - Simplify checking for group location's file information, when file has not been involving in file-mounting operations. - Use binary encoding for modification time, instead of ASCII. - Hoist H5HL_peek calls (to get information in a local heap) out of loops in many group routine. - Use static variable for iterators of selections, instead of dynamically allocation them each time. - Lookup & insert new entries in one step, avoiding traversing group's B-tree twice. - Fixed memory leak in H5Gget_objname_idx() routine (tangential to performance improvements, but fixed along the way). - Use free-list for reference counted strings. - Don't bother copying object names into cached group entries, since they are re-created when an object is opened. The benchmark I used to measure these results created several thousand small (2K) datasets in a file and wrote out the data for them. This is Elena's "regular.c" benchmark. These changes resulted in approximately ~4.3x speedup of the development branch when compared to the previous code in the development branch and ~1.4x speedup compared to the release branch. Additionally, these changes reduce the total memory used (code and data) by the development branch by ~800KB, bringing the development branch back into the same ballpark as the release branch. I'll send out a more detailed description of the benchmark results as a followup note. New internal API routines: Added "reference counted strings" API for tracking strings that get used by multiple owners without duplicating the strings. Added "ternary search tree" API for text->object mappings. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} Other platforms/configurations tested? FreeBSD 4.7 (sleipnir) serial & parallel Solaris 2.6 (baldric) serial
* [svn-r6233] Purpose:Albert Cheng2003-01-031-0/+1
| | | | Updated with the newly added file, H5MPprivate.h.
* [svn-r6215] Added Files:Albert Cheng2002-12-181-2/+1
| | | | | | | | | | | | | | | fortran/config/powerpc-ibm-aix5.x To cover AIX 5.x. Removed Files: fortran/config/powerpc-ibm-aix4.2.1.0 fortran/config/powerpc-ibm-aix4.3.2.0 These files are outdated and have been replaced by powerpc-ibm-aix4.x. Modified Files: MANIFEST Update it. Platforms tested: Only on LLNL blue. LLNL SP are the only machines that use these files and that I have access.
* [svn-r6128] Purpose:Quincey Koziol2002-11-201-0/+1
| | | | Added entry for H5Tget_native_type test review document.
* [svn-r6119] Purpose:Quincey Koziol2002-11-201-0/+2
| | | | Add "test review" pages.
* [svn-r6110] Purpose:Quincey Koziol2002-11-201-0/+2
| | | | | | | | | | | | | | | Code cleanup/new feature Description: Removed poorly named H5_HAVE_COMPRESSION flag in favor of H5_HAVE_FILTER_DEFLATE. Added new test files for "missing filter" testing. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} FreeBSD 4.7 (sleipnir)
* [svn-r6099] Raymond Lu2002-11-181-0/+3
| | | | | | | | | | | Purpose: bug fix. Description: h5dump cannot dump data and datatype for VL string. Platforms tested: eirene, arabica Misc. update: MANIFEST, RELEASE.txt
* [svn-r6086] MuQun Yang2002-11-131-0/+2
| | | | | | | | | Purpose: updated file list including shuffling code and shuffling note Description: Solution: Platforms tested: Misc. update:
* [svn-r6060] Raymond Lu2002-11-061-0/+1
| | | | | | | | | | | Purpose: Add new functions Description: add H5Tget_native_type and H5Tis_variable_str. Platforms tested: arabica, eirene, modi4 Misc. update: MANIFEST and release_docs/RELEASE updated.
* [svn-r6053] Purpose:Quincey Koziol2002-11-051-0/+1
| | | | | | | Add file Description: Add parallel hyperslab benchmark.
* [svn-r6036] Description:Albert Cheng2002-10-281-0/+1
| | | | | | Updated with the new entry of Daily_tests_explained. Platforms tested: bin/chkmanifest
* [svn-r6027] Purpose:Bill Wendling2002-10-231-0/+7
| | | | | | | | | Update Description: Added new files to the MANIFEST and added a new configure switch for enabling building of the Flexible parallel HDF5 module. Platforms tested: Modi4 Eirene Arabica
* [svn-r6018] Description:Albert Cheng2002-10-201-1/+1
| | | | | | updated with the removal of h5dumptst.c and the addition of h5dumpgentest.c Platforms tested: Only tested in eirene via bin/chkmanifest
* [svn-r6011] Purpose:Albert Cheng2002-10-161-0/+1
| | | | Updated with added file.
* [svn-r5980] Purpose:Quincey Koziol2002-10-141-0/+1
| | | | Add the tools/h5diff/Dependencies file.
* [svn-r5977] Purpose:Pedro Vicente Nunes2002-10-111-1/+0
| | | | removed the Dependencies in h5diff from the MANIFEST file (the Dependencies file was not generated in the h5diff dir )
* [svn-r5974] Purpose:Pedro Vicente Nunes2002-10-101-1/+6
| | | | insert then h5diff files
* [svn-r5953] Raymond Lu2002-09-301-1/+2
| | | | | | | Purpose: Update for new test program. Description: Added file_handle.c in /test
* [svn-r5940] Elena Pourmal2002-09-231-3/+4
| | | | | | | | | | | | | | | | | | | | Purpose: Bug fix, code improvement Description: Fortran tests didn't cleanup created files. Also HDF5_PREFIX and HDF5_PARAPREFIX were not used to specify location of the files. There was a redundant file in the testpar directory that contained an error reporting function used by both serial and parallel tests. Solution: Created library h5test_fortran.a that contains functions used by the serial and parallel tests. It includes Fortran and C functions that may be called from Fortran programs to report errors, to modify file names and to cleanup files after run. Modified test code to use new functions. Platforms tested: Linux 2.2 (eirene) serial IRIX64 (modi4) parallel with HDF5_PREFIX and HDF5_PARAPREFIX set to $SCR Solris 2.7 with mpich 1.2.4 with HDF5_PARAPREFIX set to /tmp/epourmal
* [svn-r5879] Raymond Lu2002-08-201-0/+1
| | | | | | | | | Purpose: Design for compact dataset Description: Compact dataset is stored in the header message for dataset layout. Platforms tested: arabica, eirene.
* [svn-r5872] Purpose:Quincey Koziol2002-08-121-0/+4
| | | | | | | | | | | | Code cleanup Description: Move get/set routines for each type of property list (file creation, dataset creation, file access and dataset transfer) into their own source code module. Platforms tested: FreeBSD 4.6 (sleipnir)
* [svn-r5804] Purpose:Quincey Koziol2002-07-151-0/+3
| | | | Update with new MPI-posix driver files and testpar testing script.
* [svn-r5728] Updated with added file.Albert Cheng2002-06-291-0/+1
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* [svn-r5633] Updated.Albert Cheng2002-06-141-1/+1
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* [svn-r5625] Updated.Albert Cheng2002-06-131-2/+1
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* [svn-r5610] Updated with the added h5redeploy tool.Albert Cheng2002-06-121-0/+1
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* [svn-r5554] Purpose:Bill Wendling2002-06-071-0/+1
| | | | | | | | | | | | Compress I/O Test Add Description: This is the initial check-in of the compress I/O test. It will write out compressed buffers to a file. I need to implement a write of uncompressed data first for comparison... Platforms tested: Linux
* [svn-r5512] Purpose:Bill Wendling2002-06-031-0/+1
| | | | | | Update Description: Added the "perform/gen_report.pl" file.
* [svn-r5301] MuQun Yang2002-05-011-1/+0
| | | | | | | | Purpose: remove all_withhdf4.zip from the file list Description: Solution: Platforms tested:
* [svn-r5235] Purpose:Bill Wendling2002-04-231-0/+1
| | | | | | | | | | | | | | | | Update Description: Updated the way we used the AC_INIT macros so that it's current to the new standard way and not deprecated anymore. Also, added a test for some functions during parallel Fortran configure. This required the creation of an H5config_fortran.h file so that we can test for these... Platforms tested: Elena is going to test the changes to the fortran after she checks in her other code. I will test on SDSC machines after getting her code. The other changes were tested on Linux.
* [svn-r5189] Pedro Vicente Nunes2002-04-171-0/+1
| | | | | Purpose: added new file ./test/getname.c
* [svn-r5174] Purpose:Quincey Koziol2002-04-121-0/+2
| | | | Update manifest with new files.
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