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* Update top-level COPYING file and remove COPYING files from subdirectories ↵Dana Robinson2021-05-031-20/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | (#561) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING (license) file. * Add release_docs/code-conventions.md file. * Add script to test h5py. * Fix script error. * Add file h5pytest.yml. * Test declaration of counter variables in for loops. * Committing clang-format changes * Committing clang-format changes * Added [] to line 126 of H5LTanalyze.l. Ran bin/genparser with flex v2.6.4 and Bison v3.0.4 on jelly. * Revert "Added [] to line 126 of H5LTanalyze.l." This reverts commit e4a9cee441efa75b16a8ee030c86189e186dd266. * Revert extra commits to match canonical develop. * Update top-level COPYING file and remove COPYING files from subdirectories. * Remove subdirectory COPYING files from MANIFEST. Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Brings many CMake changes from developDana Robinson2021-04-081-0/+7
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* Brings H5module.h from develop and fixes Autotools badnessDana Robinson2021-04-071-2/+3
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* Fixes MANIFEST and missing H5TSpublic.h fileDana Robinson2021-04-071-27/+28
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* Brings H5RS changes from developDana Robinson2021-04-061-0/+1
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* Adds missing utils Makefile.in entries to MANIFESTDana Robinson2021-03-271-0/+2
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* Brings the 'warnings-as-errors' changes from developDana Robinson2021-03-251-0/+9
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* Updates license url and history docsDana Robinson2021-03-251-2/+4
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* Brings the clang-format files from developDana Robinson2021-03-241-0/+3
| | | | NOTE: Not wired into github actions at this time.
* Protects timespeccmpDana Robinson2021-03-231-1/+0
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* Fixed MANIFESTDana Robinson2021-03-231-0/+4
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* Removed the rest of the hlog codeDana Robinson2021-03-021-3/+0
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* Fixes the MANIFESTDana Robinson2021-03-011-1/+28
| | | | | Also renames "SWMR Example.png" to SWMR_Example.png since the MANIFEST doesn't deal with spaces very well.
* Merge branch 'aug-develop' into aug-merge-attempt/feature/vfd_swmrDavid Young2020-08-041-21/+11
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| * Correct h5diff filenamesAllen Byrne2020-07-291-4/+4
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| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-171-0/+1
| |\ | | | | | | | | | | | | | | | * commit '9d3ea366d4bf3278e8260f4d5cdcc88cb4b61c56': Update MANIFEST. Add new test to Cmake. Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
| | * Update MANIFEST.vchoi2020-07-161-0/+1
| | | | | | | | | | | | Add new test to Cmake.
| * | Tools refactorAllen Byrne2020-07-151-0/+3
| |/ | | | | | | | | | | Move error_stack setup to tools library Add structure for h5dump properties Eliminate duplicated h5diff functions Use properties structure in place of argument lists.
| * Clean up warningsQuincey Koziol2020-06-281-0/+2
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| * Fix MANIFESTDana Robinson2020-06-101-0/+2
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| * Update MANIFEST for removal of older warnings files.Larry Knox2020-05-201-19/+1
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| * Correct pathAllen Byrne2020-05-071-1/+1
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| * Add github actionsAllen Byrne2020-05-061-0/+2
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| * TRILAB-244 separate CXX warnings and errors from CAllen Byrne2020-04-231-0/+3
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| * TRILAB-192 - cleanup edits and match CMake CXX to autotoolsAllen Byrne2020-04-131-0/+1
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| * Merge branch 'develop' of ↵Jacob Smith2020-04-071-4/+51
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into feature/vfd_splitter_mirror_a
| | * Move intel warnings to subfolder, update autotools filesAllen Byrne2020-04-061-2/+2
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| | * Flag construction must be after compiler detectionAllen Byrne2020-04-051-0/+1
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| | * TRILAB-192 add c++ and fortran warnings build systems one fileAllen Byrne2020-04-051-0/+11
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| | * TRILAB-192 add comparable clang flagsAllen Byrne2020-03-271-0/+4
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| | * Update the MANIFEST for the autoconf/cmake shared warnings files.David Young2020-03-241-3/+34
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| * | Tidying of Mirror VFD.Jacob Smith2020-04-071-1/+1
| | | | | | | | | | | | | | | | | | | | | * Rename server-stop utility to mirror_server_stop. * Remove external dependency on bzero(). * Modify test/use_common to use only the public API. * Rename internal bitswap macro to follow convention.
| * | Add Splitter VFD to library.Jacob Smith2020-03-131-0/+21
| |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * "Simultaneous and equivalent" Read-Write and Write-Only channels for file I/O. * Only supports drivers with the H5FD_FEAT_DEFAULT_VFD_COMPATIBLE flag for now, preventing issues with multi-file drivers. Add Mirror VFD to library. * Write-only operations over a network. * Uses TCP/IP sockets. * Server and auxiliary server-shutdown programs provided in a new directory, `utils/mirror_vfd`. * Automated testing via loopback ("remote" of localhost).
| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-02-241-0/+2
| |\ | | | | | | | | | | | | * commit 'd24afb233383aa6c945fad430eb1b66edc4d6c63': Add missing MANIFEST entry, ./doc/code-conventions.md .
| | * Add missing MANIFEST entry, ./doc/code-conventions.md .David Young2020-02-201-0/+2
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| * | HDFFV-11036 add file compare test processAllen Byrne2020-02-241-0/+1
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| * Merge pull request #2341 in HDFFV/hdf5 from ~DYOUNG/werror:thread_id to developDavid Young2020-02-051-0/+1
| |\ | | | | | | | | | | | | | | | | | | | | | * commit 'cefacee21b5ad569e2394b32793648e1b80f3d6b': src/H5Eint.c: #include H5TSprivate.h for H5TS_thread_id() definitions. Change thread IDs to uint64_t from unsigned long, per Quincey's suggestion. Add thread_id.c to the MANIFEST and the CMakeLists.txt per Allen's request. Replace pthread_self_ulong() with H5TS_thread_id(). The POSIX Threads implementation ought to be portable to any system that has POSIX Threads. On Windows, I use the same API call as before.
| | * Add thread_id.c to the MANIFEST and the CMakeLists.txt per Allen'sDavid Young2020-02-031-0/+1
| | | | | | | | | | | | request.
| * | HDFFV-10996 - add java vol testsAllen Byrne2020-02-031-0/+1
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| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-01-191-0/+1
| |\ | | | | | | | | | | | | | | | | | | | | | | | | * commit '66a94df13b3801547523f1ea90bc84fe2ee6824b': Removed UIUC from copyright, added helpful comment. Updated MANIFEST Added a config file for ARM (Tested on a Raspberry Pi 3B+ w/ gcc 6). Tidying from code review. Fixed stack and frame size warnings. Not complete, but fixes most of the easier cases.
| | * Updated MANIFESTDana Robinson2020-01-171-0/+1
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| * | Create common build system files for warningsAllen Byrne2020-01-171-0/+6
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| * Squashed commit of the token_refactoring branch:Dana Robinson2020-01-161-2/+6
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| * Add test for reference shutdown issueJerome Soumagne2020-01-151-0/+1
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| * Merge pull request #2173 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-12-211-0/+25
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '576e713924b1802a64ae2f6655d2389d70fadfd1': Add new h5diff files Fix compile statement order HDFFV-10976,-10980 Init obj_type before calling H5Rget_obj_type3 Add unknown define for h5dump ref objects Standalone doesn't use h5test implementation. HDFFV-10980 - h5diff uses new ref APIs
| | * Add new h5diff filesAllen Byrne2019-12-211-0/+3
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| | * HDFFV-10980 - h5diff uses new ref APIsAllen Byrne2019-12-191-0/+22
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| * | Refactor all the 'H5VL_*_optional' callbacks to move the type of operation outQuincey Koziol2019-12-201-0/+1
| |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | of the va_list, so it's at least possible for another connector to know what the operation is and decide whether to implement it or not. Added a new VOL sub-class called "introspect" where callbacks that report information about the connector or container can be placed. Added an 'opt_query' callback to this sub-class, for a connector to report back to the library whether a particular optional callback operation is supported. Also added a 'get_conn_cls' introspection callback, to retrieve the H5VL_class_t of a connector (either the "current" connector, H5VL_GET_CONN_LVL_CURR, or the terminal connector, H5VL_GET_CONN_LVL_TERM). Moved the "post open" operation from a file 'specific' operation to a file 'optional' operation, now that it's possible to detect (with the 'opt_query' introspection callback) whether a VOL connector implements an optional operation, without just returning an error. Added new internal VOL helper routines: H5VL_object_is_native, to determine if an object is in (or is a) native file, and H5VL_file_is_same, to determine if two objects are in (or are) the same terminal VOL connector's container. (And moved the special handling for FILE_IS_EQUAL operation out of internal VOL callback routine into H5VL_file_is_same) Made new dataset 'get' operation for H5Dvlen_get_buf_size, aligning it better with other 'get' operations in API. Fixed several issues with pass-through connectors, which are now passing the 'make check-passthrough-vol' tests again. A bunch of warning and style cleanups as well.
| * TRILABS-135 Add clang analyzersAllen Byrne2019-12-111-0/+7
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| * Add missing filenamesAllen Byrne2019-12-091-2/+3
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