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* Remove duplicate file namesAllen Byrne2019-10-031-2/+0
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* HDFFV-10918 External Storage test files addedAllen Byrne2019-10-021-0/+22
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* Add new toolchain fileAllen Byrne2019-10-011-0/+1
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* fix for statement declare variableAllen Byrne2019-09-301-0/+1
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* Merge S3 code from develop to 1.10Allen Byrne2019-09-131-0/+22
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* Fix EXISTS test syntax and add toolchainAllen Byrne2019-08-291-0/+1
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* Merge fixes and code reconciliation wit developAllen Byrne2019-08-051-0/+1
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2019-07-291-0/+6
|\ | | | | | | | | | | | | * commit 'b20ffd84e3572cd506bf1f696431892258e9ab3b': Updated the command for external_env and vds_env to the most recent changes. 1. Updated the commands for compiling two new tests (external_env.c and vds_env.c). 2. Changed the data file names for external.c and external_env.c to avoid potential name conflict. HDFFV-10658: setting and getting properties in API context. Porting the changes to the develop branch into the 1.10 branch: mainly the external file prefix and VDS prefix.
| * HDFFV-10658: setting and getting properties in API context. Porting the ↵Songyu Lu2019-07-261-0/+6
| | | | | | | | changes to the develop branch into the 1.10 branch: mainly the external file prefix and VDS prefix.
* | HDFFV-10845, 10529 and CMake changes from developAllen Byrne2019-07-241-4/+0
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* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2019-07-231-0/+1
|\ \ | |/ | | | | | | | | * commit '308393a020bd7a812c231eee8130c9365d192e18': Change "bad" hid_t_value to H5I_INVALID_HID in test_libver_bounds_copy() test. Bring pull request #1729 from develop to 1.10: Fix for HDFFV-10800 H5Ocopy failure: The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format version bounds array for fill value message, should be version 3 not 2.
| * Bring pull request #1729 from develop to 1.10:Vailin Choi2019-07-171-0/+1
| | | | | | | | | | | | Fix for HDFFV-10800 H5Ocopy failure: The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format version bounds array for fill value message, should be version 3 not 2.
* | Merge from develop, mostly HDFFV-10845Allen Byrne2019-07-121-3/+3
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* Squash commit of options to build tools and testsDhvanil Popat2019-06-251-2/+4
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* HDFFV-9407 Merge test addition from developAllen Byrne2019-06-251-0/+1
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* HDFFV-10805 Merge SHARED ONLY option from developAllen Byrne2019-06-201-2/+0
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* Update cmake macros and java arg formatAllen Byrne2019-05-311-0/+2
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* HDFFV-10552 Revert H5O_*1 functions for compatibilityAllen Byrne2019-02-221-0/+1
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* Add new files to MANIFEST.Larry Knox2019-02-201-0/+2
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* Updated MANIFESTDana Robinson2019-02-151-1/+0
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* Merge pull request #1543 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-02-141-6/+19
|\ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'f4f8be19125002764715f6cd25372477c729f809': Script changes from develop Added TRILABS-111 note Add HDFFV-10628 known problem TRILAB-111 Update MPI CMake
| * TRILAB-111 Update MPI CMakeAllen Byrne2019-02-131-6/+19
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* | Re-write of Java JNI error handlingJordan Henderson2019-02-141-0/+26
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* Remove obsolete fileAllen Byrne2019-02-061-1/+0
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* Renamed data fileBinh-Minh Ribler2019-02-011-1/+1
| | | | | | | | | Description: Renamed data file with long name to a shorter name. Revised an entry in RELEASE.txt Platforms tested: Linux/64 (jelly) Darwin (osx1010test)
* Merge branch 'hdf5_1_10' of ↵Binh-Minh Ribler2019-01-311-1/+0
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_1_10_bmr into hdf5_1_10
| * HDFFV-10686 revert H5Oget_info1 to H5Oget_info(H5Ovisit)Allen Byrne2019-01-241-1/+0
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* | Fixed HDFFV-10586, HDFFV-10588, and HDFFV-10684Binh-Minh Ribler2019-01-311-0/+1
|/ | | | | | | | | | | | | | | | | | | | | | | | | | Description: HDFFV-10586 CVE-2018-17434 Divide by zero in h5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix does not cover all cases, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. HDFFV-10684 H5Ewalk does not stop until all errors in the stack are visited The test for HDFFV-10588 has revealed a bug in H5Ewalk. H5Ewalk did not stop midway even when the call back function returns H5_ITER_STOP. This is because a condition is missing from the for loops in H5E__walk causing the callback functions unable to stop until all the errors in the stack are iterated. Quincey advised on the final fix. In this fix, "status" is switched to "ret_value" and HGOTO_ERROR to HERROR, and the for loops won't continue when "ret_value" is not 0. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
* Merge pull request #1442 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to ↵Vailin Choi2019-01-071-1/+2
|\ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '1a50622733c14d89b3fd8c6bab684af9205a3b96': Fix for daily test failure: too many arguments to function 'H5Gopen1'. Fix the git merge leftover in RELEASE.txt. Fix the git merge leftovers in RELEASE.txt. Fix for HDFFV-10659: The library aborts with "infinite loop closing library" after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
| * Fix for HDFFV-10659: The library aborts with "infinite loop closing library"Vailin Choi2019-01-061-1/+2
| | | | | | | | | | | | | | | | after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
* | Merge pull request #1447 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-01-071-0/+1
|\ \ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'f7d530dd275e176e59b26c1b7363ba16b3ab6c9c': HDFFV-10674, 10664, 10674
| * | HDFFV-10674, 10664, 10674Allen Byrne2019-01-071-0/+1
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* | Merged the rest of the parallel flush test code.Dana Robinson2019-01-071-0/+1
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* Remove files that do not exist in branchAllen Byrne2019-01-021-2/+0
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* Merge of logging framework updates.Dana Robinson2018-12-311-1/+3
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* Merge CMake changes from developAllen Byrne2018-12-201-0/+3
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* Manifest fixAllen Byrne2018-12-141-0/+2
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* HDFFV-10660,-10594 merge from developAllen Byrne2018-12-131-0/+9
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* HDFFV-10632 separate stderr and stdout in testsAllen Byrne2018-12-131-29/+36
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* Moved fixes for incorrectly installed header files to 1.10.Dana Robinson2018-12-061-6/+0
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* Merge CMake changes from developAllen Byrne2018-10-231-1/+2
| | | Improved cross-compiling and toolchains
* HDFFV-10575, 10332, 10531, 10594 and TRILAB-21Allen Byrne2018-10-041-0/+2
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* Merge pull request #1224 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developLarry Knox2018-08-281-0/+1
| | | | | | | | * commit '763b95c6b0f027025a5a5bfb203b77317ffa2368': Update RELEASE.txt with suggested changes Update MANIFEST file for new t_coll_md_read.c file Remove now-unused local variable Add fix for HDFFV-10501
* Adjust warning flags to match autotools, add configure statusAllen Byrne2018-08-211-0/+1
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* Add missing file and remove deletedAllen Byrne2018-07-271-2/+0
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* Add swmr tests, fix java scriptAllen Byrne2018-07-271-0/+5
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* Updated for C2Cppfunction_map.htmBinh-Minh Ribler2018-07-261-1/+1
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* Added class DSetAccPropListBinh-Minh Ribler2018-07-261-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Added class DSetAccPropList for the dataset access property list. - Added wrapper for H5Dget_access_plist to class DataSet // Gets the access property list of this dataset. DSetAccPropList getAccessPlist() const; - Added wrappers for H5Pset_chunk_cache and H5Pget_chunk_cache to class DSetAccPropList // Sets the raw data chunk cache parameters. void setChunkCache(size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0) // Retrieves the raw data chunk cache parameters. void getChunkCache(size_t &rdcc_nslots, size_t &rdcc_nbytes, double &rdcc_w0) - Added two more arguments to H5Location::createDataSet: const DSetAccPropList& dapl = DSetAccPropList::DEFAULT const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT - Added one more argument to H5Location::openDataSet: const DSetAccPropList& dapl = DSetAccPropList::DEFAULT Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
* Modifications made based on feedback from pull request.Vailin Choi2018-07-261-0/+8
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* HDFFV-10519 Disable WriteVL JNI function, updgrade JNIAllen Byrne2018-06-291-3/+3
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