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* [svn-r12917] Pedro Vicente Nunes2006-11-151-20/+16
| | | | | | | | h5repack revision: 1. added a new test due to the introduction of H5Ocopy in the copy of objects (compressed dataset with references, that still must go a second sweep of the file to be regenerated). 2. Moved all the source files from the h5repack test program to a new file h5repacktst.c and removed the old ones (testh5repack*.c). 3. Renamed the binary files from test*.h5 to h5repack*.h5 for easy reference. 4. Modified the shell script to use variables for file names instead of hard coded names
* [svn-r12909] Updated MANIFEST, no other changes.James Laird2006-11-141-0/+7
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* [svn-r12899] Description:Elena Pourmal2006-11-131-0/+1
| | | | Added new file h5_ref2reg.c to MANIFEST
* [svn-r12896] Description:Quincey Koziol2006-11-131-0/+1
| | | | | | | | Move compact storage routines into separate file, to make room for internal routines that operate on links within group operations. Tested on: Linux/32 2.6 (chicago)
* [svn-r12888] Pedro Vicente Nunes2006-11-101-1/+0
| | | | | Introduced the second sweep of the file for a case a reference is present and H5Ocopy was not used. Moved the code from file h5repack_refs.c to h5repack_copy.c and removed the first file
* [svn-r12869] Description:Quincey Koziol2006-11-061-0/+1
| | | | | | | | Rename new H5Gcopy() routine to H5Ocopy() as discussed in last Friday's design discussion. Tested on: Linux/32 2.6 (chicago)
* [svn-r12862] Description:Elena Pourmal2006-11-041-2/+4
| | | | | | | Daily tests reported broken MANIFEST file; fixed. Platfroms tested: heping with bin/chkmanifest
* [svn-r12851] Purpose: Update MANIFEST with new reference test.Leon Arber2006-11-021-0/+1
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* [svn-r12842] Description:Quincey Koziol2006-11-021-0/+1
| | | | | | | | | | | | | | | | Refactor generic property list initialization code to put property list specific routines in property list modules, instead of scattered to the four winds. Also, introduce property list class initialization objects, to make adding new property list classes in the library easier. Fix daily test failure by using H5Pget_elink_prefix() API routine instead of looking at the "raw" generic property list information. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/C++ & FORTRAN Linux/64 2.4 (mir) w/build-all & 1.6 compat
* [svn-r12815] Pedro Vicente Nunes2006-10-251-9/+13
| | | | | | | | | | | | | | 1) added a new parameter to the h5diff function diff_array that contains the beginning position of the hyperslab, so that the total position in the array is printed correctly when reading by hyperslabs. 2) added a new test to h5diff that reads and diffs by hyperslabs. The test reads a 1GB dataset, from which a 1KB hyperslab was written with differences . 3) added the generation of 2 files to the generator program to test the h5diff hyperslab read. 4) changed the h5diff binary pre-generated file names to be more descriptive (e.g, instead of file1.h5, made it h5diff_basic1.h5) 5) changed the name of the h5repack options text file to info.h5repack
* [svn-r12814] MuQun Yang2006-10-251-0/+1
| | | | Add a new batch file copytest.BAT to test h5copy on windows.
* [svn-r12797] Purpose: Adding testBinh-Minh Ribler2006-10-221-0/+1
| | | | | | | | Description: Added trefer.cpp to c++/test. Platform tested: ran bin/chkmanifest
* [svn-r12791] Change stattest.bat to stattest.BAT. MuQun Yang2006-10-201-1/+1
| | | | Windows is not case sensitive but Unix is.
* [svn-r12789] Add a new windows test batch file(stattest.bat) to test h5stat ↵MuQun Yang2006-10-201-0/+1
| | | | on windows.
* [svn-r12784] Pedro Vicente Nunes2006-10-191-0/+1
| | | | | | | | | | | | | | | | | Fixes for bugs 676, 228 676: both h5repack and h5diff use H5Dread. In the case of a "big" dataset, use read/write by hyperslabs the same way h5dump uses. An arbitrary value of 1GB was defined for "big", i.e, if the dataset is greater than 1GB, then read/write by hyperslabs 228: use the file type in read/write by default. A new switch -n was introduced if the user wants to use a native type, which was the previous use by default. Added a new test for h5repack that repacks a 1GB dataset Tested: heping (serial, parallel), sol, copper
* [svn-r12739] Added Direct I/O driver to VFD. It's only supported by SGI ↵Raymond Lu2006-10-101-0/+2
| | | | | | | | | | Altix (cobalt). There's a configure option --enable-direct-vfd/--disable-direct-vfd to enable/disable Direct I/O support. The default is enabled. There's a small test in test/vfd.c. Another way to test it is to set environment variable HDF5_DRIVER to "direct" and run "make check" in the test/ directory. There'll be some further improvement in the following checkin including allowing user to provide memory boundary value, file block size, and copying buffer size.
* [svn-r12708] Description:Quincey Koziol2006-10-031-0/+1
| | | | | | | | | | | | | | | | | | | Add the "use the latest version of the format" support to datatype messages. And a regression test to check that it's working. Also, found that we have been over-allocating space for compound datatype messages (when they have array datatypes or can use the latest version of the format) and trimmed the size back. Clean up datatype & dataspace encode/decode routines by having them allocate & release "fake" file structures, which gets them out of needing to "know" about the internals of file structures. Other minor whitespace/formatting cleanups, etc. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12700] Alert:Quincey Koziol2006-10-021-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | File format is not stable, don't keep files produced! Description: First stage of checkins modifying the format of groups to support creation order. Implement "dense" storage for links in groups. Try to clarify some of the symbols for the H5L API. Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest file format options (including "dense" link storage in groups) Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation order tracking in groups (although no index on creation order yet). Remove --enable-group-revision configure flag, as file format issues are now handled in a backwardly/forwardly compatible way. Clean up lots of compiler warnings and other minor formatting issues. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 compa Mac OSX/32 10.4.8 (amazon) AIX 5.3 (copper) w/parallel & FORTRAN
* [svn-r12698] Updated to include t_pflush tests.Leon Arber2006-10-011-0/+2
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* [svn-r12689] Added bin/gcov_script to the MANIFESTJames Laird2006-09-271-0/+1
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* [svn-r12685] added a new binary file for h5dump testfilesPedro Vicente Nunes2006-09-261-0/+1
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* [svn-r12676] Adding jamtest.bat line for windows.MuQun Yang2006-09-201-0/+1
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* [svn-r12671] Pedro Vicente Nunes2006-09-181-0/+4
| | | | | | | added a test file generator program for h5copy, modified test script to use that file, added binary file to repo tested on heping, shanti
* [svn-r12640] Frank Baker2006-09-041-0/+19
| | | | | | | | Description: Add per-directory abbreviated copyright notices (abbreviated COPYING files pointing to full notices). Tested: MANIFEST verified; not otherwise tested.
* [svn-r12624] Added external link files to MANIFEST (oops!).James Laird2006-08-241-0/+2
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* [svn-r12605] Description:Quincey Koziol2006-08-211-0/+5
| | | | | | | | | | | | | Break out a bunch of the misc. routines that were in src/H5.c into more specific modules. Add optimized fletcher32 checksum routine, for checksumming metadata as well as raw data. Tested On: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2) Will test further after checkin...
* [svn-r12592] Description:Quincey Koziol2006-08-171-0/+1
| | | | | | | | | | | | | | | | | | | | | Several changes, all mooshed together: - Add support for "tiny" objects - which can be stored in the heap ID itself, instead of in the heap data blocks. - Flesh out support for compressed direct blocks, but comment it out until John's got some metadata cache changes in place to support it. - Add support for applying I/O pipeline filters to 'huge' objects - Refactor 'huge' object code to store information for 'huge' objects directly in the heap ID, when there are I/O pipeline filters applied to the heap (and the heap ID is large enough to hold the information) - Update h5debug tool to correctly handle 'huge' & 'tiny' objects. - Misc. other code cleanups, etc. Tested on: FreeBSD/32 4.11 (sleipnir) Linux/64 2.4 (mir) Solaris/64 2.9 (shanti)
* [svn-r12568] Description:Quincey Koziol2006-08-121-1/+1
| | | | | | | | | Rename some files, to better align with the names of the functions within them. Tested on: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r12562] Description:Quincey Koziol2006-08-101-0/+2
| | | | | | | | | | | | Initial revision to add support for "huge" objects in the heap (which are actually stored directly in the file, but are tracked with v2 B-tree that is accessed through heap header). Testing: FreeBSD 4.11 (sleipnir) Linux/64 2.4 (mir) Linux/32 2.4 (heping) Mac OS X.4 (amazon)
* [svn-r12559] Maintenance for VMSElena Pourmal2006-08-091-0/+1
| | | | | | | | | Added files created by James for user-define links to the command files Added new script check_h5jam.com to test h5jam/h5unjam; test script needs more work. Platforms tested: VMS server and test script only.
* [svn-r12545] Description:Quincey Koziol2006-08-041-0/+1
| | | | Add external link test file
* [svn-r12536] updated for the newly added file, ./tools/testfiles/nosuchfile.ls.Albert Cheng2006-08-041-0/+1
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* [svn-r12528] Added User-Defined links to the library.James Laird2006-08-021-0/+15
| | | | | | | | | | | | | | Users can create external links using H5L_create_external(). These links point to an object in another HDF5 file. Users can alter the behavior of external links or create new kinds of links by registering callbacks using the H5L interface. Added tests, tools support, etc. Also a number of other, minor changes have been made (some restructuring of the H5L interface, for instance). Additional documentation and examples are forthcoming.
* [svn-r12526] Description:Elena Pourmal2006-08-021-0/+1
| | | | | | | | Added test script to test h5import tool; added new source file to the make.com file in the src directory. Platforms tested: Only h5import was tested on the VMS server
* [svn-r12525] Description:Quincey Koziol2006-08-021-0/+1
| | | | | | | | | | | Refactored free space manager to use metadata cache for serialized free space sections. This speeds up the fractal heap test considerably... Tested: FreeBSD 4.11 (sleipnir) Linux 2.4/32 (chicago) Linux 2.4/64 (mir) Mac OS X (amazon)
* [svn-r12523] Description:Elena Pourmal2006-08-011-0/+2
| | | | | | | Added command files to compile and test h5copy tool. Platfroms tested: VMS server
* [svn-r12518] h5dump binary output:Pedro Vicente Nunes2006-07-311-1/+2
| | | | | | | 1. changed the -F flag option names to "BE and "LE" for big and little endian 2. added a more verbose usage message for these options 3. add a new test 4. add a make clean instruction to *.bin
* [svn-r12513] Pedro Vicente Nunes2006-07-281-0/+1
| | | | | new feature h5dump binary output. use little and big endian type conversions
* [svn-r12512] Added check_h5repack.com file to MANIFESTElena Pourmal2006-07-271-0/+1
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* [svn-r12509] Added command file to test h5diff utility.Elena Pourmal2006-07-271-0/+1
| | | | All tests passed on the VMS server.
* [svn-r12508] MuQun Yang2006-07-271-0/+1
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* [svn-r12498] Added script to test h5ls tool on VMS system. All tests passed ↵Elena Pourmal2006-07-261-0/+1
| | | | | | | | | | except for the last one h5ls -w80 -v -S tattr2.h5 h5ls prints "native" for all types instead of the complete datatype definition. I will look into the problem next.
* [svn-r12497] Update MANIFEST so that new windows dsp file binread.dsp is ↵MuQun Yang2006-07-261-0/+1
| | | | | | included. Forgetting updating MANIFEST may be the reason why alpha release doesn't include binread.dsp and causes the problem on windows.
* [svn-r12488] added a missing file to manifestPedro Vicente Nunes2006-07-211-0/+1
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* [svn-r12482] new tool h5copyPedro Vicente Nunes2006-07-191-0/+6
| | | | | | | | it uses the API function H5Gcopy to copy groups and datasets from file to file, read from a command line note: the test script is not finished yet tested on heping, copper, shanti
* [svn-r12467] Rename h5stat output file to avoid lower/upper-case filename ↵MuQun Yang2006-07-141-1/+1
| | | | clash on Windows
* [svn-r12465] Add regression test to check that the library handles files ↵Quincey Koziol2006-07-141-0/+2
| | | | | | | | with merged object header messages properly. Too minor to require h5committest
* [svn-r12453] Purpose:James Laird2006-07-051-0/+7
| | | | | | | Documentation update Description: Updated MANIFEST and RELEASE.txt for H5L change
* [svn-r12444] Purpose:Pedro Vicente Nunes2006-06-281-0/+1
| | | | | | | | | | | | | | | | | | | | new feature Description: added support for h5dump to dump binary data using the file type format added one test to the test script that tests this Solution: Platforms tested: mir shanti copper Misc. update:
* [svn-r12437] Purpose:Pedro Vicente Nunes2006-06-261-0/+3
| | | | | | | | | | | | | | | | | | | | | | new feature. h5dump output of binary data Description: a new switch -b FILE_NAME that dumps the contents of memory data to file FILE_NAME in binary form new program binread.c that reads the contents of this file and outputs it to stdout added a test for the h5dump shell script that does a run of -b the binread.c program reads the data used in this run, usage is ./binread FILE_NAME Solution: Platforms tested: linux solaris AIX Misc. update:
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