| Commit message (Collapse) | Author | Age | Files | Lines |
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Update manifest with reconfigure.sh -> reconfigure change
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Description:
Removed:
c++/src/H5Idtemplates.h
c++/src/H5RefCounter.cpp
c++/src/H5RefCounter.h
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Forgot to update Manifest
Solution:
Added bin/reconfigure.sh to Manifest.
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Description: Removed PABLO instrumentation from HDF5 source
Solution:
Platforms tested: arabica, copper (parallel), mir
Misc. update:
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A new configuration file hdf5/config/i686-pc-cygwin is add for HDF5 on Cygwin. So MANIFEST should be updated to include this file.
Description:
Solution:
Platforms tested:
Misc. update:
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Remove feature
Description:
Retire threaded, balanced binary tree code from HDF5 use. Requiescat in
pace...
Also, regenerate dependencies files.
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel
Too minor to require full h5committesting (the code is already
disconnected from everything except its tests)
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Removing documents that were superseded by the C++ RM (at Release 11.6.3).
Removing duplicate entry for a C++ RM file:
./doc/html/cpplus_RM/header_files/filelist.xml
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Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-)
Description:
Generally speaking, this is the "signed->unsigned" change to selections.
However, in the process of merging code back, things got stickier and stickier
until I ended up doing a big "sync the two branches up" operation. So... I
brought back all the "infrastructure" fixes from the development branch to the
release branch (which I think were actually making some improvement in
performance) as well as fixed several bugs which had been fixed in one branch,
but not the other.
I've also tagged the repository before making this checkin with the label
"before_signed_unsigned_changes".
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel & fphdf5
FreeBSD 4.10 (sleipnir) w/threadsafe
FreeBSD 4.10 (sleipnir) w/backward compatibility
Solaris 2.7 (arabica) w/"purify options"
Solaris 2.8 (sol) w/FORTRAN & C++
AIX 5.x (copper) w/parallel & FORTRAN
IRIX64 6.5 (modi4) w/FORTRAN
Linux 2.4 (heping) w/FORTRAN & C++
Misc. update:
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Updated with added bin/deploy entry
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added hl to the 1.6 branch, as was done for the 1.7
Description:
Solution:
Platforms tested:
linux (using a build directory outside the source)
Misc. update:
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Add new internal data structure
Description:
Add an implementation of skip lists to the library (see comment in
src/H5SL.c for references to the papers describing them) as a potential
replacement for our current threaded, balanced binary tree container.
Skip lists are much simpler to implement and should be faster to use.
Also, added new error codes to release branch, so bump the minor version
number to indicate that the library is no longer perfectly compatible with
the 1.6.3 release.
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel
Solaris 2.7 (arabica)
Too minor to require further testing (the skip lists aren't actually
used by any library code yet)
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Update manifest with missing file
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Update manifest with new files.
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bug fix
Description:
one case was not handled in the combination of input options (layout and filters)
Solution:
redo the algorythm that handles all cases
Platforms tested:
linux
Misc. update:
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Port development branch changes to release branch.
Description:
Initial step in bringing changes to support new metadata cache from the
development branch to the release branch.
Solution:
This checkin just aligns the H5AC* API changes, as well as bringing back
various minor code cleanups, etc.
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel
Solaris 2.7 (arabica)
Linux 2.4 (verbena) w/FORTRAN
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Refactor and update fortran configuration
Description:
Changed configure.in to include the production, debugging and profiling
flags for FORTRAN in the command line.
Added '-flags' files for PGI and Intel C compilers
Added '-fflags' files for PGI and Intel FORTRAN compilers
Updated 'gnu-flags' file for GNU C compiler to not modify compiler flags
when gcc is not being used.
Make detection of the correct FORTRAN compiler a bit smarter for Linux
platforms. (And carried over some of the minor changes to other affected
machines)
Platforms tested:
Linux 2.4 (tungsten) w/PGI and Intel C & FORTRAN compilers.
Changes not tested by h5committest
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Putting 'h5jam' in the 1.6 branch
Description:
Solution:
Platforms tested:
verbena, arabica, cobalt
Misc. update:
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Update manifest with new file.
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Bug fix & code cleanup
Description:
More dataset cleanups to get to a point where we can fix the chunked I/O
bug.
Also fix a couple of errors in the recent file object resurrection changes
which should hopefully address the recent daily test failres (H5T.c)
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel
Solaris 2.7 (arabica)
h5committest
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Update manifest list.
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Description: Removed entries for
INSTALL_Windows_withF90.txt INSTALL_Windows_withcpp.txt
since files were deleted from CVS.
Solution:
Platforms tested: arabica with bin/chkmanifest
Misc. update:
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Update manifest with new files for C++ reference manual directory.
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Add Dependencies and Makefile.in in hdf5/doc/html/cpplus_RM/.`
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Re-order the addition of two windows install docs to MANIFEST.
Description:
MANIFEST has been updated when two new windows installed files are checked in.
However, daily tests show check of MANIFEST failed. It seems that the order of the file makes difference.
Change the order of the two install files in the MANIFEST. See whether it will fail again.
Solution:
Platforms tested:
Misc. update:
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Add two new document files for windows support.
Description:
Solution:
Platforms tested:
Misc. update:
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new test for h5repack
Description:
added a test that generates and copies a file with a dataset with fill value
(this is to test the property list function H5Pequal)
Solution:
Platforms tested:
linux
solaris
aix
Misc. update:
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Description
Removed these lines because the files were there by mistake:
./doc/html/cpplus_RM/page1.html
./doc/html/cpplus_RM/pages.html
Misc. update:
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Description:
Added these lines
./c++/src/config_cpp_doc
./c++/src/h5c++.in
./c++/src/header.html
./c++/src/header_files/filelist.xml
./c++/src/header_files/image001.jpg
./c++/src/header_files/image002.jpg
Misc. update:
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remove the line with all_withf90.zip.
Description:
all_withf90.zip is no longer needed due to merging of fortran projects to all.zip
Solution:
Platforms tested:
Misc. update:
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Purpose:
Removing 2 extraneous lines from the "C++ Ref Manual" section.
(Corrects an error introduced yesteday.)
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Purpose:
Adding the files for the C++ Reference Manual.
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Backport feature
Description:
Backport Kent's collective chunk I/O work to date into the release branch.
Also, minor code cleanups, etc.
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel
IRIX64 6.5 (modi4)
h5committested
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Update manifest
Description:
Add a couple of missing files.
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Bug fixes & code cleanups
Description:
Backport MPI-I/O changes from the development branch to the release
branch in preparation for bringing Kent's collective chunk I/O changes back.
Removed last vestiges of FPHDF5 from this branch, as it was never working
here.
Various code cleanups & syncrontizations to better align with development
branch code and reduce diffs.
Regenerate dependencies.
Platforms tested:
FreeBSD 4.10 (sleipnir) w/parallel
IRIX64 6.5 (modi4)
h5committested
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Description:
Added these lines
./c++/src/H5ArrayType.cpp
./c++/src/H5ArrayType.h
./c++/src/H5VarLenType.cpp
./c++/src/H5VarLenType.h
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Description
Added file c++/src/H5CppDoc.h.
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h5diff and h5repack changes
Description:
h5diff
introduced the following four modes of output:
Normal mode: print the number of differences found and where they occured
Report mode: print the above plus the differences
Verbose mode: print the above plus a list of objects and warnings
Quiet mode: do not print output (h5diff always returns an exit code of 1 when differences are found)
h5repack
added an extra parameter for SZIP filter (coding method)
the new syntax is
-f SZIP=<pixels per block,coding>
(pixels per block is a even number in 2-32 and coding method is 'EC' or 'NN')
Example of use:
./h5repack -i file1 -o file2 -f SZIP=8,NN -v
updated usage messages, test scripts and files accordingly
Solution:
Platforms tested:
linux
solaris
AIX
Misc. update:
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Purpose:
Bug Fix
Description:
If an HDF5 file grows larger than its address space, it dies and is unable to
write any data. This is more likely to happen since users are able to change
the number of bytes used to store addresses in the file.
Solution:
HDF5 now throws an error instead of dying. In addition, it "reserves" address
space for the local heap and for object headers (which do not allocate space
immediately). This ensures that after the error occurs, there is enough address
space left to flush the entire file to disk, so no data is lost.
A more complete explanation is at /doc/html/TechNotes/ReservedFileSpace.html
Platforms tested:
sleipnir, copper (parallel), verbena, arabica, Windows (Visual Studio 7)
Misc. update:
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new file for the h5repack tests
Description:
Solution:
Platforms tested:
Misc. update:
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h5repack changes
Description:
there were some requests to change some minor h5repack features
h5repack only made a warning about a non available filter in verbose mode ( -v )
without -v it kept silent, and users sometimes missed this warning
the request was that it should print this warning always. so, the new format, is e.g
./h5repack -i test_szip.h5 -o out.h5
Warning: dataset </dset_szip> cannot be read, SZIP filter is not available
due to this, and to avoid a lot of these messages in the shell test script, I modified
the script h5repack.sh so that it detects the presence of all filters in the environment
(previously it only detected SZIP)
the test files were also divided in more files , to make the script code easier to
follow
Solution:
Platforms tested:
linux
AIX (without SZIP)
solaris (without gzip and SZIP)
Misc. update:
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h5dump new tests
Description:
added new tests for the print of array indices (nested objects, several ranks)
Solution:
Platforms tested:
Misc. update:
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Bug fix
Description:
The "shared" raw B-tree node can get freed before all the B-tree nodes
had been flushed out to disk and released by the cache.
Solution:
Implement a simple reference counting wrapper for objects in the library
and use it to hold the shared raw B-tree nodes so they aren't freed before all
references to them in memory are released.
Platforms tested:
Solaris 2.7 (arabica)
FreeBSD 4.10 (sleipnir)
IRIX64 6.5 (modei4)
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Description:
Removed c++/examples/*.h5
Platforms tested:
Not necessary
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h5dump new tests
Description:
added more tests for the escape/not escape feature for string data (with vlen, with
compound, with char data)
Solution:
Platforms tested:
Misc. update:
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h5dump new tests
Description:
added new tests for the -p option, superblock, file contents, fill values, array indices.
Solution:
Platforms tested:
linux
AIX
solaris
Misc. update:
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Purpose: New feature and its test
Description: Added API H5Fget_name. It returns the name of file by object ID(file, group, dataset, named datatype, attribute) which belongs to the file. filename.c tests this function.
Platforms tested: h5committest
Misc. update: MANIFEST, RELEASE.txt
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Purpose:
Added an HDF5 file for testing purposes.
Description:
Solution:
Platforms tested:
Misc. update:
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