| Commit message (Collapse) | Author | Age | Files | Lines |
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Tested: local linux (CMake branch has been tested on Windows)
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Accidentally duplicated the line in the previous commit.
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Added ./c++/src/footer.html
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possibly all) daily testing. When the behavior is acceptable, the changes should be merged into the regular release script as a --revision option.
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Merge from trunk
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fix for HDFFV-9412:
- Check for mpi is_initialized and is_finalized before making MPI calls in init/terminate of HDF5.
- Add a test to make sure we can make serial HDF5 calls from rank 0 after MPI_Finalize is called.
tested with h5committest
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HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in compound type.
Added the testing to h5repack where it belongs.
Undo the tests added to h5dump.
Tested: h5committested plus tested in jam by hand.
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Tested local linux cmake
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compound type
Fixed and added user provided test file to verify the fix. (Test added to h5dump/testh5dump.sh.in).
Tested: h5committest
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HDFFV-8957: h52gif crashes when run against one of our own examples
The tool claimed it could handle 24bit images but there was no code to handle it.
(or might be there were but was removed by previous revisions.)
Also discovered that it does not accept multiple images nor -p for palette
as its user document and online help message indicated.
Solution:
Added code to verify dimension sizes are within 8 bit raster images limit and
added tests to verify the tools correctness.
Need to update user document tool.
Tested: h5committested.
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tested: h5committest
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Remove DEFAULT_LIBS from configure.ac and irix6.x config file which
was using it.
Remove references to IRIX/irix* platform.
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Tested: windows
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h5committest
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Update windows wix cpack process.
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r26188 r26280
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HDFFV-883: attach callback to terminate HDF5 library when MPI_COMM_SELF is destroyed on MPI_Finalize.
tested h5committest.
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Tested on: bin/chkmanifest
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HDFFV-9046: reorganize hdf5/perform, step 2
Move timing measurement routines used by h5perf and h5perf_serial to tools/lib
so that they can be used by other tools too.
tools/lib/io_timer.c
tools/lib/io_timer.h
tools/perform/io_timer.c
tools/perform/io_timer.h
renamed perform/io_timer.[ch] to lib/io_timer.[ch]
tools/lib/Makefile.am
tools/lib/Makefile.in
tools/lib/CMakeLists.txt
tools/perform/Makefile.in
tools/perform/Makefile.am
tools/perform/CMakeLists.txt
MANIFEST
updated due to the move.
Tested; h5committest and jam (serial)
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HDFFV-8902: merge the source code of h5perf and h5perf_serial, stage 1.
tools/perform/sio_timer.h:
tools/perform/pio_timer.c:
tools/perform/io_timer.h:
tools/perform/io_timer.c:
Renamed pio_timer.[ch] as io_timer.[ch];
merged content of sio_timer.[ch] into io_timer.[ch] so that both h5perf and h5perf_serial
call the combined io_timer.[ch].
Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs.
Screened out set_timer_type() and get_timer_type() which were not used by any code.
tools/perform/Makefile.am:
tools/perform/Makefile.in:
tools/perform/CMakeLists.txt
Adjusted to use io_timer.c for both h5perf and h5perf_serial.
tools/perform/pio_perf.c:
tools/perform/sio_perf.c:
tools/perform/pio_perf.h:
tools/perform/sio_perf.h:
Renamed [sp]io_time_destory() to same io_time_destroy();
Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs.
tools/perform/pio_engine.c:
tools/perform/sio_engine.c:
Removed #include io_timer.h since it was already #include by [sp]io_perf.h.
MANIFEST:
Updated the merge of [sp]io_timer.[ch] into io_timer.[ch].
Tested: h5committest and jam in extra.
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Moved perform/ to tools/perform. Updated all the configure related files for the new location.
Tested: h5committested plus tested in jam and kite.
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files previously committed.
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Aligning code with changes made in VOL branch. This will make porting
non VOL related changes from trunkto the 1.8 branch much easier.
tested h5commitest.
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For the top level, brings in changes for configure.ac, configure and the MANIFEST:
svn merge -c25286 https://svn.hdfgroup.uiuc.edu/hdf5/trunk .
svn merge -c25287 https://svn.hdfgroup.uiuc.edu/hdf5/trunk .
svn merge -c25290 https://svn.hdfgroup.uiuc.edu/hdf5/trunk .
For the fortran level:
384 17:00 svn merge -r25235:25272 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
389 17:01 svn merge -r25284:25432 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
For the fortran merges, I skipped changes relating to hyperslab selection since the C source has not been merged from the trunk yet. These changes should be in place in the fortran source when the C source is merged to the 1.8 branch.
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h5diff issues "unable to read attribute" error message when comparing
two files
Description:
h5diff did not handle attributes of variable length strings
correctly. It created the wrong memory type if one but not both
compared attributes are of the variable strings type. It ended in
H5Aread() failure.
Solution:
We decided to treat the case when one type is variable length string
and the other is not as incomparable. That bypassed the above error.
We still need to figure out the proper way, if possible, to compare
variable string with non-variable string types.
Tested: h5committested plus tested in Swallow (OS X 10.8).
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Description:
- Fixed a few comments that Doxygen gave warnings on.
- Updated configuration file for Doxygen.
- Removed stylesheet from configuration so Doxygen will use the default
stylesheet and removed the CLANG-related lines to eliminate another
error since we're not using that feature, so the lines should not
present. (from cpp_doc_config)
- Added missing images
(merged from trunk-r24996 and r25019)
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
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svn merge -r24929:25009 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran
tested: jam (gnu)
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Added c++/test/tobject.cpp
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Tested: h5committest
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Description:
Added transform property list functions
// Constructor creates a dataset transform property list.
DSetMemXferPropList(const char* expression);
// Sets data transform expression.
void setDataTransform(const char* expression) const;
void setDataTransform(const H5std_string& expression) const;
// Gets data transform expression.
ssize_t getDataTransform(char* exp, size_t buf_size=0) const;
H5std_string getDataTransform() const;
Added test file tdspl.cpp.
Platforms tested:
Linux/ppc64 (ostrich)
Linux/32 2.6 (jam)
SunOS 5.11 (emu)
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Tested: local linux
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Missed a file in the last checkin.
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Bring r24864 from trunk to 1.8 branch:
Remove all traces of MPI-POSIX VFD and GPFS detection/code.
Remove remaining traces of stream VFD.
Remove testpar/t_posix_compliant test (it's not actually verifying anything).
Clean up H5D__mpio_opt_possible() further.
Moved environment variable that disables MPI collective operations into
MPI-IO VFD (instead of it being in src/H5S.c).
A few other small code cleanups.
Tested on:
Mac OSX/64 10.9.2 (amazon) w/parallel & serial
(daily tested on trunk)
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Bring r24769 & r24772 from trunk to 1.8 branch:
Check in Mohamad's changes to support collective I/O on point selections,
along with some other minor cleanups.
Correct some dynamically sized arrays that fail on Windows.
Tested on:
Mac OSX/64 10.9.2 (amazon) w/parallel
(And has been through the daily test regime on the trunk)
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HDFFV-8505: UD filter changes to remove filters in h5repack.
Tested: local linux
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rename H5V to H5VM since H5V is needed in the fastforward project for
view objects. The addition of view objects in the fastforward project
is expected to be brough into the trunk sometimes in the future, which
is why we need to make this change.
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Remove obsolete CPack.cmake file.
Merge h5repack and h5mkgrp test folder changes from trunk.
Tested: local linux
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Update tools testfiles
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Added
./c++/src/H5Location.cpp
./c++/src/H5Location.h
Verified with bin/chkmanifest.
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Added
./c++/examples/h5tutr_cmprss.cpp
./c++/examples/h5tutr_crtatt.cpp
./c++/examples/h5tutr_crtdat.cpp
./c++/examples/h5tutr_crtgrpar.cpp
./c++/examples/h5tutr_crtgrp.cpp
./c++/examples/h5tutr_crtgrpd.cpp
./c++/examples/h5tutr_extend.cpp
./c++/examples/h5tutr_rdwt.cpp
./c++/examples/h5tutr_subset.cpp
Verified with bin/chkmanifest
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UD plugins.
Also warning session fixes.
Tested: CMake local linux
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scripts. HDFFV-8498 merge from trunk.
Tested: local linux - cmake and autotools
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forgot to update MANIFEST.
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Also add default switch blocks to h5import.
Merge h5dump any_path option from trunk.
Tested: local linux
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