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* [svn-r24024] JAVA-1714: CMake packaging for macs improvedAllen Byrne2013-08-191-0/+5
| | | | | | | HDFFV-7989: h5dump any_path and help text grouping Added cygwin-64 support Merged from trunk, tested local linux
* [svn-r24014] This checkin is a merge of the checkin for h5stat to the trunk ↵Vailin Choi2013-08-161-0/+17
| | | | | | | | | | | | (rev #23975-23977) + an additional bug fix-- A) Fix for HDFFV-1238: --Add 3 new options to allow users in setting threshold for small groups/datasets/attributes (tools/h5stat/h5stat.c) --Generate new test file for testing the new options (tools/h5stat/h5stat_gentest.c) --Add tests for the new options (tools/h5stat/testh5stat.sh.in) --Update expected output files (tools/h5stat/testfiles/*.ddl) B) Fix a bug in determining maximum dimension size for 1-D dataset in dataset_stats() (tools/h5stat/h5stat.c) C) Fix a bug when using opt_arg that is NULL for the new options.
* [svn-r23898] HDFFV-8476: Add optional arg to -A for excluding attributes.Allen Byrne2013-07-151-0/+2
| | | | | | Merged from trunk. Tested: local linux
* [svn-r23869] HDFFV-8302: replace (v)snprintf with _(v)snprintf for windows. ↵Allen Byrne2013-07-081-0/+4
| | | | | | | | Merge from trunk along with other windows functions and HD prefix corrections. HDFFV-8394: Add cmake code to package examples Tested: local linux
* [svn-r23771] HDFFV-8434,-8437,-8445,-8447,-8461: Merge changes from Trunk.Allen Byrne2013-06-141-0/+6
| | | | Tested: local linux
* [svn-r23702] Issue 8380 - H5Zunregister caused seg fault. This is a porting ↵Raymond Lu2013-05-141-0/+1
| | | | | | | | | of code from the trunk. It fixes the problem by first iterating through all opened datasets and groups to see if any of them uses the filter. If it finds one, the function fails with a message. Then the function flushes all opened files. Tested with h5committest.
* [svn-r23663] Bug fix: HDFFV-8236Albert Cheng2013-05-021-22/+26
| | | | | | | | | | | | | Some files are not distributed when release tarball is created by bin/release according to MANIFEST. But --enable-build-all compiles them in test/. Solution: Distributed those missing files for now. Need to resolve if these files should be distributed or not. And if not, fix --enable-build-all NOT to compile them. Tested: use bin/release to generate the tarball and run --enable-build-all with it. Error is gone and all passed.
* [svn-r23639] Removed INSTALL_MinGW because, Albert Cheng2013-04-261-1/+0
| | | | | | | | | 1. The file states that: NOTE: We are no longer actively supporting MinGW as of 1.8.5. 2. It is not tested for v1.8.11. 3. If we ever supports it again, it can be "restored" from previous release (e.g. v1.8.10).)
* [svn-r23625] Updated and renamed documentsAllen Byrne2013-04-251-3/+3
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* [svn-r23550] Description:Quincey Koziol2013-04-041-1/+1
| | | | | | | | | | Bring r23549 from trunk to desy_1_8 branch: More misc. cleanups, but main change is to make an "extern" header file for the plugin interface. Tested on: Mac OSX/64 10.8.3 (amazon)
* [svn-r23521] I merged the changes for testing groups with filter into this ↵Raymond Lu2013-04-021-0/+1
| | | | | | branch. Tested on jam and koala.
* [svn-r23510] I merged the changes for DESY project from the trunk (r23496) ↵Raymond Lu2013-04-011-0/+7
| | | | | | into this 1.8 DESY branch. Tested with h5committest (duck failed with CMake because I don't know how to change test/CMakeLists.txt. I'll wait for Allen to do it).
* [svn-r23362] -r23091 and 23093 from trunk.Scot Breitenfeld2013-03-171-0/+9
| | | | Tested: jam (intel)
* [svn-r23352] merged -r22826:23050 and -r23060:23351 from trunk into branch.Scot Breitenfeld2013-03-151-8/+13
| | | | Tested: jam (gnu, intel)
* [svn-r23301] Allen Byrne2013-02-181-22/+42
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* [svn-r23211] Merge trunk CMake changes for minimum cmake version of 2.8.10. ↵Allen Byrne2013-01-311-2/+1
| | | | | | This was prompted by HDFFV-8227, OS X requires latest version of cmake for proper support. Tested: local linux
* [svn-r23187] HDFFV-8169: Binary output of String types are wrongAllen Byrne2013-01-221-0/+2
| | | | | | Merge from trunk Add testfiles. Tested: local linux
* [svn-r23182] I'm merging the changes for DECTRIS project from the trunk ↵Raymond Lu2013-01-211-0/+5
| | | | | | (r23162). Tested on koala, jam, ostrich.
* [svn-r23172] Updated with added cmakehdf5.Albert Cheng2013-01-161-0/+1
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* [svn-r23122] Brought revisions from the trunk into the branch:Scot Breitenfeld2012-12-311-7/+5
| | | | | | | r23116-23118 : HDFFV-2686: Remove the ptExampleVL.c example from the source code HDFFV-422: Change extention of the binary files from hdf5 to h5 Tested: jam (gnu)
* [svn-r22952] Purpose:Dana Robinson2012-10-231-430/+0
| | | | | Removed legacy Visual Studio solutions and projects, which will no longer be supported after HDF5 1.8.10.
* [svn-r22937] Purpose:Dana Robinson2012-10-221-2/+2
| | | | | | | Reorganize obsolete Windows docs. Tested: N/A (docs only), ran bin/chkmanifest
* [svn-r22796] HDFFV-8110: Removed mpi-perf.c which was given with permission ↵Albert Cheng2012-09-211-1/+0
| | | | | | | | | | | | | | | | | | | | | to freely distribute by the author. It was an example program showing how to measure parallel IO speed. Since then, we have created h5perf to do I/O performanace measurement. This example is not needed any more. mpi-perf.c: Removed. Makefile.am: Makefile.in: Removed the entry of mpi-perf.c so that "configure --enable-build-all ..." will not build it. MANIFEST: Updated. The change is trivial that I got permission to skip the code review step. Tested: h5committest plus "--enable-parallel --enable-build-all" in koala.
* [svn-r22776] HDFFV-8129: upgrade autotoolsAllen Byrne2012-09-171-7/+6
| | | | | Merge Trunk changes to 1.8 Tested: h5committest
* [svn-r22724] Convert tests to *.sh.in.Allen Byrne2012-08-281-7/+7
| | | | | | | | Convert configure.in to configure.ac. Align TESTS usage with autotools convention. Update all references from configure.in to configure.ac Tested: h5committest
* [svn-r22701] Purpose: Jonathan Kim2012-08-201-0/+1
| | | | | | | | | | | | | Address HDFFV-7942 - h5diff: incorrect result for comparing attribute data with different type size in same class Description: When comparing attribute data values with same type class but different size, the result was incorrect. It was due to the size difference and got truncated. Fixed to match up the smaller type size to big type size like what dataset does. Merged from HDF5 trunk r22684 and r22691. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE cmake), cmake (jam)
* [svn-r22632] Merge from trunk revision 22631Allen Byrne2012-08-061-1/+9
| | | | tested: local linux
* [svn-r22571] HDFFV-7784,-8095,7936 merge from trunkAllen Byrne2012-07-131-1/+42
| | | | Tested: local linux with cmake
* [svn-r22551] Merge changes from Trunk revision 22550 for:Allen Byrne2012-07-111-0/+6
| | | | | | HDFFV-4206, -7953, -5930, -2687, -5942 Tested: local linux with cmake
* [svn-r22517] HDFFV-7782: h5import testfiles duplicated to match testname. ↵Allen Byrne2012-07-051-33/+41
| | | | | | (Consistent naming) Tested: local linux using CMake
* [svn-r22451] Brought cmake configuration / configure changes from Trunk.Allen Byrne2012-06-111-3/+2
| | | | Tested jam, local linux
* [svn-r22442] Description:Quincey Koziol2012-06-061-0/+1
| | | | Add new file to MANIFEST
* [svn-r22397] Merge trunk changes for HDFFV-7999 and h5dump test script to branchAllen Byrne2012-05-231-0/+3
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* [svn-r22367] change file name caseAllen Byrne2012-05-141-1/+1
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* [svn-r22335] Fixed manifest from last docs check-in.Dana Robinson2012-05-021-5/+3
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* [svn-r22329] Add examples/README file to be installed with examples.Larry Knox2012-05-011-1/+1
| | | | | | It was in hdf5 v1.8.8, but not checked into the 1.8 branch. :Text file only, but tested with h5committest.
* [svn-r22320] Purpose:Jonathan Kim2012-04-271-0/+5
| | | | | | | | | | | | | | | Fix for HDFFV-7998-h5diff: incorrect behavior and output for comparing symbolic dangling links without following-symlinks option Description: Fix not to check and display dangling link status without --follow-symlinks option. Berfor the fix, when comparing symbolic link to symbolic link without follow-symlinks option, h5diff followed to check if those links are dangling or not. It caused to display output incorrectly (dangling link instead of symbolic link). The fix also improved performance when comparing lots of symbolic links without the --follow-symlinks option. Test cases were added and tagged with jira#. This merged from HDF5 trunk r22319. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22281] Purpose:Jonathan Kim2012-04-111-0/+1
| | | | | | | | | | | | | Fix for HDFFV-7993 - h5repack fails with error "chunk size must be <= maximum dimension size for fixed-sized dimensions" Description: Fixed a failure when change the chunk size of a specified chunked dataset with unlimited max dims. Also took care of converting to contiguous and compact from the dataset. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22277. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22232] Description:Quincey Koziol2012-04-011-1/+1
| | | | Fix another typo in MANIFEST
* [svn-r22230] Description:Quincey Koziol2012-04-011-0/+1
| | | | Correct typo in MANIFEST file
* [svn-r22228] Description:Quincey Koziol2012-04-011-20/+24
| | | | | | | | | Bring r22219 from trunk to 1.8 branch: (with release manager's blessing) Merge "file image" changes from feature branch back to trunk. Tested on: h5committested
* [svn-r22188] Purpose:Jonathan Kim2012-03-291-0/+2
| | | | | | | | | | | | | Fix for HDFFV-7644 GMQS: h5diff - incorrect behaviors when comparing HDF5 files with different type of objects (dataset, group, type) as common objects Description: Fixed failure for comparing same named object with different object types in comparing groups. (common object comparison) Prior to the fix, h5diff resulted in error. After the fix, h5diff detects such case as non-comparable and display messages accordingly. Test cases were added and tagged with jira#. Merged from HDF5 trunk 22176. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam)
* [svn-r22124] Purpose:Jonathan Kim2012-03-221-0/+5
| | | | | | | | | | | | | | | | Fix for HDFFV-7837 - h5diff: incorrect behavior with exclude-path option when unique object exist only in one file Description: If unique objects exists only in one file and try to exclude the unique objects with --exclude-path option, h5diff missed excluding some objects. Fixed to exclude objects correctly in such case. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22114. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22092] Reorder tools/h5jam/testfiles orderingAllen Byrne2012-03-191-1/+1
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* [svn-r22088] HDFFV-7957(7958): Correct use of ERROR_STACK for h5dump and tools.Allen Byrne2012-03-191-0/+4
| | | | Tested: local linux after week in trunk
* [svn-r22057] Purpose:Jonathan Kim2012-03-121-0/+4
| | | | | | | | | | | | | | Fix for HDFFV-7835 h5diff: incorrect result for comparing the two same type symlinks as dangling links. Description: When two symbolic dangling links are compared with --follow-symlinks option, the result should be same. It works for comparing two files, but didn't work for comparing two objects. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22038. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22043] HDFFV-7839: Dangling link should not display errorAllen Byrne2012-03-121-0/+1
| | | | | | | If a link is specified on the command with the -d option, call the handle_links function on error from the H5Dopen command. Updated test file results with error stack when link not found. Tested: trunk
* [svn-r22013] HDFFV-7560:Allen Byrne2012-03-021-3/+17
| | | | | | | | | | Merge 1.8 and h5dump/tools and tests based on tools library from trunk. Reduced warnings. HDFFV-7949: Remove duplicated functions in h5ls Tested: local linux,h5committest
* [svn-r21892] Purpose:Jonathan Kim2012-01-251-0/+1
| | | | | | | | | | | | | | | | Fix for HDFFV-7836 h5diff: displays error stack message for comparing the two dangling symlink with follow-symlinks option Description: While ago, to improve performance, skipping same object checking (h5tools_is_obj_same()) was added. However the checking function doesn't understand about the dangling link and caused the issue. Since handling dangling link code section already implemented, move the checking function after handling dangling-links to address the problem. Test was added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r21866] Purpose:Jonathan Kim2012-01-061-0/+2
| | | | | | | | | | | | | | Fix for HDFFV-7838 h5ls: segfault for handling region reference in attribute with -v option Description: Segfault occurred when h5ls access region reference data in an attribute. This didn't occurred when -v option was used. The cause was "h5tool_format_t info;" struct variable members were accessed without proper values were assigned (was NULL), so printf failed later in the code. Merged from HDF5 trunk r21865. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), , cmake-Windows (32-LE)
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