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* [svn-r23211] Merge trunk CMake changes for minimum cmake version of 2.8.10. ↵Allen Byrne2013-01-311-2/+1
| | | | | | This was prompted by HDFFV-8227, OS X requires latest version of cmake for proper support. Tested: local linux
* [svn-r23187] HDFFV-8169: Binary output of String types are wrongAllen Byrne2013-01-221-0/+2
| | | | | | Merge from trunk Add testfiles. Tested: local linux
* [svn-r23182] I'm merging the changes for DECTRIS project from the trunk ↵Raymond Lu2013-01-211-0/+5
| | | | | | (r23162). Tested on koala, jam, ostrich.
* [svn-r23172] Updated with added cmakehdf5.Albert Cheng2013-01-161-0/+1
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* [svn-r23122] Brought revisions from the trunk into the branch:Scot Breitenfeld2012-12-311-7/+5
| | | | | | | r23116-23118 : HDFFV-2686: Remove the ptExampleVL.c example from the source code HDFFV-422: Change extention of the binary files from hdf5 to h5 Tested: jam (gnu)
* [svn-r22952] Purpose:Dana Robinson2012-10-231-430/+0
| | | | | Removed legacy Visual Studio solutions and projects, which will no longer be supported after HDF5 1.8.10.
* [svn-r22937] Purpose:Dana Robinson2012-10-221-2/+2
| | | | | | | Reorganize obsolete Windows docs. Tested: N/A (docs only), ran bin/chkmanifest
* [svn-r22796] HDFFV-8110: Removed mpi-perf.c which was given with permission ↵Albert Cheng2012-09-211-1/+0
| | | | | | | | | | | | | | | | | | | | | to freely distribute by the author. It was an example program showing how to measure parallel IO speed. Since then, we have created h5perf to do I/O performanace measurement. This example is not needed any more. mpi-perf.c: Removed. Makefile.am: Makefile.in: Removed the entry of mpi-perf.c so that "configure --enable-build-all ..." will not build it. MANIFEST: Updated. The change is trivial that I got permission to skip the code review step. Tested: h5committest plus "--enable-parallel --enable-build-all" in koala.
* [svn-r22776] HDFFV-8129: upgrade autotoolsAllen Byrne2012-09-171-7/+6
| | | | | Merge Trunk changes to 1.8 Tested: h5committest
* [svn-r22724] Convert tests to *.sh.in.Allen Byrne2012-08-281-7/+7
| | | | | | | | Convert configure.in to configure.ac. Align TESTS usage with autotools convention. Update all references from configure.in to configure.ac Tested: h5committest
* [svn-r22701] Purpose: Jonathan Kim2012-08-201-0/+1
| | | | | | | | | | | | | Address HDFFV-7942 - h5diff: incorrect result for comparing attribute data with different type size in same class Description: When comparing attribute data values with same type class but different size, the result was incorrect. It was due to the size difference and got truncated. Fixed to match up the smaller type size to big type size like what dataset does. Merged from HDF5 trunk r22684 and r22691. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE cmake), cmake (jam)
* [svn-r22632] Merge from trunk revision 22631Allen Byrne2012-08-061-1/+9
| | | | tested: local linux
* [svn-r22571] HDFFV-7784,-8095,7936 merge from trunkAllen Byrne2012-07-131-1/+42
| | | | Tested: local linux with cmake
* [svn-r22551] Merge changes from Trunk revision 22550 for:Allen Byrne2012-07-111-0/+6
| | | | | | HDFFV-4206, -7953, -5930, -2687, -5942 Tested: local linux with cmake
* [svn-r22517] HDFFV-7782: h5import testfiles duplicated to match testname. ↵Allen Byrne2012-07-051-33/+41
| | | | | | (Consistent naming) Tested: local linux using CMake
* [svn-r22451] Brought cmake configuration / configure changes from Trunk.Allen Byrne2012-06-111-3/+2
| | | | Tested jam, local linux
* [svn-r22442] Description:Quincey Koziol2012-06-061-0/+1
| | | | Add new file to MANIFEST
* [svn-r22397] Merge trunk changes for HDFFV-7999 and h5dump test script to branchAllen Byrne2012-05-231-0/+3
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* [svn-r22367] change file name caseAllen Byrne2012-05-141-1/+1
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* [svn-r22335] Fixed manifest from last docs check-in.Dana Robinson2012-05-021-5/+3
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* [svn-r22329] Add examples/README file to be installed with examples.Larry Knox2012-05-011-1/+1
| | | | | | It was in hdf5 v1.8.8, but not checked into the 1.8 branch. :Text file only, but tested with h5committest.
* [svn-r22320] Purpose:Jonathan Kim2012-04-271-0/+5
| | | | | | | | | | | | | | | Fix for HDFFV-7998-h5diff: incorrect behavior and output for comparing symbolic dangling links without following-symlinks option Description: Fix not to check and display dangling link status without --follow-symlinks option. Berfor the fix, when comparing symbolic link to symbolic link without follow-symlinks option, h5diff followed to check if those links are dangling or not. It caused to display output incorrectly (dangling link instead of symbolic link). The fix also improved performance when comparing lots of symbolic links without the --follow-symlinks option. Test cases were added and tagged with jira#. This merged from HDF5 trunk r22319. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22281] Purpose:Jonathan Kim2012-04-111-0/+1
| | | | | | | | | | | | | Fix for HDFFV-7993 - h5repack fails with error "chunk size must be <= maximum dimension size for fixed-sized dimensions" Description: Fixed a failure when change the chunk size of a specified chunked dataset with unlimited max dims. Also took care of converting to contiguous and compact from the dataset. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22277. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22232] Description:Quincey Koziol2012-04-011-1/+1
| | | | Fix another typo in MANIFEST
* [svn-r22230] Description:Quincey Koziol2012-04-011-0/+1
| | | | Correct typo in MANIFEST file
* [svn-r22228] Description:Quincey Koziol2012-04-011-20/+24
| | | | | | | | | Bring r22219 from trunk to 1.8 branch: (with release manager's blessing) Merge "file image" changes from feature branch back to trunk. Tested on: h5committested
* [svn-r22188] Purpose:Jonathan Kim2012-03-291-0/+2
| | | | | | | | | | | | | Fix for HDFFV-7644 GMQS: h5diff - incorrect behaviors when comparing HDF5 files with different type of objects (dataset, group, type) as common objects Description: Fixed failure for comparing same named object with different object types in comparing groups. (common object comparison) Prior to the fix, h5diff resulted in error. After the fix, h5diff detects such case as non-comparable and display messages accordingly. Test cases were added and tagged with jira#. Merged from HDF5 trunk 22176. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam)
* [svn-r22124] Purpose:Jonathan Kim2012-03-221-0/+5
| | | | | | | | | | | | | | | | Fix for HDFFV-7837 - h5diff: incorrect behavior with exclude-path option when unique object exist only in one file Description: If unique objects exists only in one file and try to exclude the unique objects with --exclude-path option, h5diff missed excluding some objects. Fixed to exclude objects correctly in such case. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22114. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22092] Reorder tools/h5jam/testfiles orderingAllen Byrne2012-03-191-1/+1
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* [svn-r22088] HDFFV-7957(7958): Correct use of ERROR_STACK for h5dump and tools.Allen Byrne2012-03-191-0/+4
| | | | Tested: local linux after week in trunk
* [svn-r22057] Purpose:Jonathan Kim2012-03-121-0/+4
| | | | | | | | | | | | | | Fix for HDFFV-7835 h5diff: incorrect result for comparing the two same type symlinks as dangling links. Description: When two symbolic dangling links are compared with --follow-symlinks option, the result should be same. It works for comparing two files, but didn't work for comparing two objects. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22038. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22043] HDFFV-7839: Dangling link should not display errorAllen Byrne2012-03-121-0/+1
| | | | | | | If a link is specified on the command with the -d option, call the handle_links function on error from the H5Dopen command. Updated test file results with error stack when link not found. Tested: trunk
* [svn-r22013] HDFFV-7560:Allen Byrne2012-03-021-3/+17
| | | | | | | | | | Merge 1.8 and h5dump/tools and tests based on tools library from trunk. Reduced warnings. HDFFV-7949: Remove duplicated functions in h5ls Tested: local linux,h5committest
* [svn-r21892] Purpose:Jonathan Kim2012-01-251-0/+1
| | | | | | | | | | | | | | | | Fix for HDFFV-7836 h5diff: displays error stack message for comparing the two dangling symlink with follow-symlinks option Description: While ago, to improve performance, skipping same object checking (h5tools_is_obj_same()) was added. However the checking function doesn't understand about the dangling link and caused the issue. Since handling dangling link code section already implemented, move the checking function after handling dangling-links to address the problem. Test was added and tagged with jira#. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r21866] Purpose:Jonathan Kim2012-01-061-0/+2
| | | | | | | | | | | | | | Fix for HDFFV-7838 h5ls: segfault for handling region reference in attribute with -v option Description: Segfault occurred when h5ls access region reference data in an attribute. This didn't occurred when -v option was used. The cause was "h5tool_format_t info;" struct variable members were accessed without proper values were assigned (was NULL), so printf failed later in the code. Merged from HDF5 trunk r21865. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), , cmake-Windows (32-LE)
* [svn-r21855] Remove cdash variables for use with CTestScript.cmake processing.Allen Byrne2011-12-301-1/+0
| | | | Tested: windows
* [svn-r21846] CTestScript generalized and not needed inside project.Allen Byrne2011-12-221-1/+0
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* [svn-r21839] Created CTestScript.cmake to better control the cmake ↵Allen Byrne2011-12-211-0/+1
| | | | | | processing of configuration, compile, test, and packing. Tested: local linux
* [svn-r21812] HDFFV-2567 - added test for be generated files with at least 9 ↵Allen Byrne2011-12-051-0/+2
| | | | | | attributes at root Tested: local linux
* [svn-r21788] Unify CMake config macros, split base macros from ext lib macrosAllen Byrne2011-12-011-0/+1
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* [svn-r21625] remove h5dump fileAllen Byrne2011-10-201-1/+0
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* [svn-r21568] Description:Scot Breitenfeld2011-10-141-83/+0
| | | | | | Merged robodoc headers from trunk in the 1.8 branch, remove functions that should have not been merged into the 1.8 branch, removed the robodoc docomentation. Tested: jam (gnu, intel, pgi)
* [svn-r21560] Description:Scot Breitenfeld2011-10-141-0/+1
| | | | Added ex_ds1.f90 example.
* [svn-r21479] Merge revision 21101 from trunk to 1.8 branch:Mike McGreevy2011-10-051-1/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | HDFFV-7639 Purpose: Remove H5_MPI_SPECIAL_COLLECTIVE_IO_WORKS and H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS #defines from source. Description: Two advanced parallel functionalities, special collective IO and complex derived datatypes, are not supported by older implementations of mpi, and thus our code limits the use of these features with #ifdefs and has checks in configure to set them (or not). Unfortunately, configure can't actually run a parallel check to see if these features are working (nor not) so it resorts to looking in the config files where they are explicity enabled or disabled based on versions of mpi, sytems being built on, or for no documented reason at all (i.e. just set to on or off as some 'default'). Overriding these settings is easy if need be, provided it is known that it needs to be done to get improved performance, and oftentimes it is not. Most new MPI implementations successfully handle the functionality requested when these #defines are set, and many of the "turn these features off" cases in the config files are for old (> 5 years) versions of MPI and retired systems (such as NCSA's tungsten). Therefore, the decision has been made to remove the support for these old versions of MPI and systems that cannot handle these behaviors. The #ifdefs and supporting setup in the config/ files and configure script has been removed, and the code executed when these options were not set removed from the source. In passing, this commit also cleans up some whitespace issues in both t_mpi.c and H5Dmpio.c. Furthermore, in t_mpi.c, the special collective IO test was not getting regularly run due to it being written to work only with four processes (we regularly test with six, previously with three), and thus it failed when actually run due to an out of bounds data buffer assignment. It has been modified to run at any number of processes greater than four, and the memory problem has been fixed so the test passes. Tested: Jam, h5committest, Ember
* [svn-r21421] Merged the Fortran 2003 changes from the trunk into the 1.8 ↵Scot Breitenfeld2011-09-271-0/+113
| | | | | | | | | | | branch, used: svn merge -r 20506:21414 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran Tested: jam (gnu, intel, pgi compilers) Also merged effected non-Fortran files: svn merge -r21247:r21248 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/src/libhdf5.settings.in
* [svn-r21404] Purpose:Jonathan Kim2011-09-211-0/+5
| | | | | | | | | | | | | | | | | | | | | | HDFFV-7693 - h5diff produces different behavior between versions: 1.8.3 and 1.8.6 Description: There were two issues on this. One was not displaying all the comparable objects if non-comparable object/attribute exist and compared before comparables ones. This issue occurred after 1.8.4 release. This is the issue from user. The other issue was not displaying all the comparable attributes, if non-comparable object/attribute exist and compared ahead. This issue were exist even before 1.8.4 release. So it's possible some attribute comparison may have not displayed correctly in the past, if non-comparable data were exist in common object. Fixed h5diff to display all the comparable object and attribute regardless of non-comparables. Merged from HDF5 trunk r21396 and r21397. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam, Windows)
* [svn-r21402] Update MANIFEST for a new file from previous checkin (HDFFV-5932)Jonathan Kim2011-09-201-0/+1
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* [svn-r21368] Purpose:Jonathan Kim2011-09-061-0/+3
| | | | | | | | | | | HDFFV-7712 - h5diff: segfault over combinations of complex container types (compound, array, vlen) Description: - Fixed segfault over dataset with container types (array,lven) with multiple nested compound types. (ex: compound->array->compound, compound->vlen->compound) - Merged from HDF5 trunk r21358. Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam)
* [svn-r21336] Synchronize cmake files with tested commits from trunkAllen Byrne2011-08-301-0/+2
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* [svn-r21264] Purpose:Jonathan Kim2011-08-191-0/+1
| | | | | | | | | | | | | | | | | | | | | Work for: HDFFV-7515 - GMQS: h5unjam - incorrect help page and should display when no file is given. and HDFFV-5941 - h5jam: specifying a user block file with a proper HDF5 magic number will result in a corrupted HDF5 file. Description: - Merged from HDF5 trunk r21236, - Revised command help pages of h5jam and h5unjam. The descriptions were not up to date and some were missing. (HDFFV-7515) - Fixed h5jam not to allow specifying an HDF5 formatted file as input file for -u (user block file) option, because the original HDF5 file will not be accessible if allows. (HDFFV-5941) Tested: jam (linux32-LE), koala (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), cmake (jam, win)
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