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* [svn-r19897] Extend packed bits and testing to 64 bit integers.Allen Byrne2010-12-301-0/+41
| | | | Tested: local Linux
* [svn-r19881] Add new file.Allen Byrne2010-12-081-0/+1
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* [svn-r19824] 1. Made fixes as in rev #19813 in trunk:Vailin Choi2010-11-181-0/+3
| | | | | | | a) Add comments to test_4() in test/external.c about the name "/ link". b) Fix one memory leak in src/H5Lexternal.c: free memory pointed to by tmp_env_prefix for HDF5_EXT_PREFIX case. 3. Made changes for bug #1930 as in rev #19783, #19781 in trunk. 4. Made corresponding CMake changes as in rev #19782 in trunk.
* [svn-r19752] Purpose:Jonathan Kim2010-11-091-0/+3
| | | | | | | | | | | | | | | Fixed Bug# 1979 Output from h5ls -rdlS on nested compound datatypes is difficult to parse. Description: Update to add curly brackets for the nested compound members, when S (--simple) option is used with -l (--label), so user can tell which members blong to which compound type. Merged from hdf5 trunk r19751. Tested: jam (linux32-LE), amani (linux64-LE)
* [svn-r19727] [BZ2072]Add compare output to expected test for help and ↵Allen Byrne2010-11-041-0/+2
| | | | | | | | version options of mkgrp. bring r19726 back from trunk Tested: local linux
* [svn-r19713] Purpose:Jonathan Kim2010-11-021-0/+2
| | | | | | | | | | | | | | | | Fixed h5diff to handle variable-length strings in a compound dataset correctly. Also variable-length string array in a compound dataset. Bug #1989. Description: Garbage values were displayed when h5diff compared variable-length strings (or string array) in a compound type dataset. Merged from hdf5 trunk r19712. Tested: jam (linux32-LE), heiwa (linuxppc64-BE)
* [svn-r19634] Purpose:Jonathan Kim2010-10-181-0/+1
| | | | | | | | | | | | Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option. Description: Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. This is expected to be failed. Merged from hdf5 trunk r19633. Tested: jam, amani
* [svn-r19618] Purpose:Mike McGreevy2010-10-151-0/+1
| | | | | | | | | | Bring metadata accumulator fixes and tests into 1.8 Description: Changes consist of addition of tests for H5Faccum.c source code, as well as some fixes that address some discovered bugs in the metadata accumulator on several corner cases. Tested: h5committested
* [svn-r19603] Purpose:Jonathan Kim2010-10-141-1/+0
| | | | | | | | | | | Backout the previous change: (Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option.) Description: Some failure occurred on talwit, so backout the changes and will put it back after the fix. (Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. This is expected to be failed. Merged from hdf5 trunk r19598.)
* [svn-r19599] Purpose:Jonathan Kim2010-10-141-0/+1
| | | | | | | | | | | Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option. Description: Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. This is expected to be failed. Merged from hdf5 trunk r19598. Tested: jam, amani
* [svn-r19528] Add clear generated objects commands to test blocks.Allen Byrne2010-10-061-1/+1
| | | | | | | | Add configurefile command to copy CTestCustom to build folder. Bring r19527 back from trunk Tested: local linux
* [svn-r19459] Add CMake tests for check-vfd; includes new vfdTest.cmake ↵Allen Byrne2010-09-211-0/+1
| | | | | | script and OPTION HDF5_TEST_VFD Tested: local linux
* [svn-r19446] Update for previous checkin r19444Jonathan Kim2010-09-201-0/+1
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* [svn-r19433] Description:Binh-Minh Ribler2010-09-201-0/+1
| | | | Added ./config/ibm-aix6.x
* [svn-r19411] Purpose: Jonathan Kim2010-09-171-0/+8
| | | | | | | | | | | | Add extra test cases for Bug1975 h5diff - support recursive comparison on group when specified as an object Description: Merged from hdf5 trunk (r19409) Additional tests for combination of group recursive and --follow-symlinks with multi-linked external links with several files (same name/strucure). Tested: jam, amani, heiwa
* [svn-r19407] Purpose:Jonathan Kim2010-09-161-1/+8
| | | | | | | | | | | | Add --exclude-path option Description: Merged from hdf5 trunk (r19406). Specified path to an object will be excluded from comparing the two files or two groups. If group is specified all the member objects will be excluded. Related to "1890: h5diff excluding object for file comparison via command line" Tested: jam, amani
* [svn-r19404] Update to H5REPACK tests for layout info required a grep script ↵Allen Byrne2010-09-161-0/+1
| | | | | | | | like runTest.cmake. Update CMakeLists.txt for new h5repack layout tests. Tested: local linux
* [svn-r19401] Purpose:Jonathan Kim2010-09-161-1/+18
| | | | | | | | | | | Fix for Bug1975 h5diff - support recursive comparison on group when specified as an object Description: Merged from hdf5 trunk (r19400). Compare member objects and groups recursively when two files or groups are specified to be compared. Support parallel diff and handling symbolic links accordingly. Tested: jam, amani
* [svn-r19391] Purpose:Jonathan Kim2010-09-151-0/+1
| | | | | | | | | | | Fix for Bug1896 h5repack - changing layout to COMPACT does not work Description: Merged from hdf5 trunk (r19389) Make h5repack be able to convert a layout to COMPACT for small size dataset as default. Also add verifying layout changes in our test script. Tested: jam, amani
* [svn-r19371] Updated autoconf to version 2.6.7, libtool to version 2.2.10, ↵Larry Knox2010-09-101-0/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | and m4 to version 1.4.14. Also added m4 directory for m4 macros according to autoconf suggestion. Tested with h5committest on amani, jam, and heiwa, and on linew. -This line, and those below, will be ignored-- M hdf5_1_8/test/Makefile.in A hdf5_1_8/m4 AM hdf5_1_8/m4/ltsugar.m4 AM hdf5_1_8/m4/libtool.m4 AM hdf5_1_8/m4/ltversion.m4 AM hdf5_1_8/m4/lt~obsolete.m4 AM hdf5_1_8/m4/ltoptions.m4 M hdf5_1_8/configure M hdf5_1_8/Makefile.in M hdf5_1_8/testpar/Makefile.in M hdf5_1_8/configure.in M hdf5_1_8/src/Makefile.in M hdf5_1_8/tools/Makefile.in M hdf5_1_8/tools/misc/Makefile.in M hdf5_1_8/tools/h5dump/Makefile.in M hdf5_1_8/tools/h5repack/Makefile.in M hdf5_1_8/tools/h5jam/Makefile.in M hdf5_1_8/tools/h5diff/Makefile.in M hdf5_1_8/tools/lib/Makefile.in M hdf5_1_8/tools/h5copy/Makefile.in M hdf5_1_8/tools/h5import/Makefile.in M hdf5_1_8/tools/h5stat/Makefile.in M hdf5_1_8/tools/h5ls/Makefile.in M hdf5_1_8/hl/test/Makefile.in M hdf5_1_8/hl/tools/Makefile.in M hdf5_1_8/hl/tools/gif2h5/Makefile.in M hdf5_1_8/hl/Makefile.in M hdf5_1_8/hl/src/Makefile.in M hdf5_1_8/hl/c++/test/Makefile.in M hdf5_1_8/hl/c++/Makefile.in M hdf5_1_8/hl/c++/src/Makefile.in M hdf5_1_8/hl/c++/examples/Makefile.in M hdf5_1_8/hl/fortran/test/Makefile.in M hdf5_1_8/hl/fortran/Makefile.in M hdf5_1_8/hl/fortran/src/Makefile.in M hdf5_1_8/hl/fortran/examples/Makefile.in M hdf5_1_8/hl/examples/Makefile.in M hdf5_1_8/config/commence.am M hdf5_1_8/MANIFEST M hdf5_1_8/c++/test/Makefile.in M hdf5_1_8/c++/Makefile.in M hdf5_1_8/c++/src/Makefile.in M hdf5_1_8/c++/examples/Makefile.in M hdf5_1_8/bin/ltmain.sh M hdf5_1_8/bin/reconfigure M hdf5_1_8/perform/Makefile.in M hdf5_1_8/fortran/test/Makefile.in M hdf5_1_8/fortran/testpar/Makefile.in M hdf5_1_8/fortran/Makefile.in M hdf5_1_8/fortran/src/Makefile.in M hdf5_1_8/fortran/examples/Makefile.in M hdf5_1_8/aclocal.m4 M hdf5_1_8/examples/Makefile.in
* [svn-r19359] When mandatory filter failed to write data chunks, the datasetRaymond Lu2010-09-081-0/+1
| | | | | | | couldn't close (bug 1260). The fix releases all resources and closes the dataset but returns a failure. Tested with h5committest - jam, heiwa, amani.
* [svn-r19326] Added parallel build commands.Allen Byrne2010-08-311-0/+2
| | | | | | | | Corrected use/name of source folder aliases. Duplicated FindMPI.cmake so that non-c++ compiler is found first (recommemded commands did not work). Bring r19325 from trunk Tested: local linux with mpich
* [svn-r19281] Fix test scripts changed extension of fileAllen Byrne2010-08-231-1/+1
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* [svn-r19257] Change Cmake to allow a local zlib header to be used in ↵Allen Byrne2010-08-201-1/+1
| | | | | | | | | | | H5Zdelate module. Corrected use of "SKIP" message in cmake. Corrections to cmake configuration files (for cmake external projects). Community suggested changes. Tested: local linux
* [svn-r19254] Description:Quincey Koziol2010-08-191-0/+5
| | | | | | | | | | | | | | | | | | | | | | | | | | Bring r19252 & 19253 from trunk to 1.8 branch: Bring Coverity changes from branch to trunk: r19161: Fixed the part for matching the subset info with dataset r19189: BZ1646: h5dump does not check number of dimensions for subsetting parameters against the dataset Changed subset_t structure from holding hsize_t pointers to holding new subset_d pointers, which hold the original hsize_t pointer + len. this len is then checked against dataset ndims in the handle_dataset function of h5dump. Changed all references to use new data structure. Added tests for each subset parameter. r19190: Added new h5dump ddl files Tested on: Mac OS X/32 10.6.4 (amazon) w/debug & production (h5committested on Coverity branch)
* [svn-r19212] Updated cmake file with community suggested changes for cmake ↵Allen Byrne2010-08-101-2/+2
| | | | | | | | install files. Removed configure check for fseek Tested: local linux
* [svn-r19199] new expected output file for BZ1953 fixAllen Byrne2010-08-091-0/+1
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* [svn-r19182] Description:Quincey Koziol2010-08-061-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | Bring r19179 from trunk to 1.8 branch: Bring changes from Coverity branch back to trunk: r19079 & 19080: [BZ1942] h5dump -u to generate XML, it does not respect the -m option xml version of dump_data function didn't check for use of fp_format variable. Added new test expected file for committed bug 1942 r19103, 19104 & 19105: [BZ1821] h5repack -v did not display correct output for a selected compression. Needed new test for comparing output of -v option. Added new test file for solution to BZ1821 BZ1821 - Bring test changes from the shell script actually used. Tested on: Mac OS X/32 10.6.4 (amazon) debug & production (h5committested on branch)
* [svn-r19134] Description:Quincey Koziol2010-07-281-0/+1
| | | | | | | | | | | | | | | | | Bring r19133 from trunk to 1.8 branch: Correct traversal of user-defined links (including external links) to retain path information of object, allowing H5Iget_name() queries to work quickly (without searching entire destination file). This required some refactoring and addition of a mechanism to detect if a "fast" query was performed (for the tests). Minor code cleanups, etc. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode (h5committest performed on trunk)
* [svn-r19109] Corrected cmake location of ConfigureChecks.cmakeAllen Byrne2010-07-201-1/+1
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* [svn-r19106] Move Resources folder to config/cmakeAllen Byrne2010-07-201-17/+17
| | | | Tested: Local Linux
* [svn-r19093] Description:Quincey Koziol2010-07-191-0/+1
| | | | | | | | | | | | | | | | | | | | Bring r19092 from trunk to 1.8 branch: Bring "shape same" changes from LBL branch to trunk. These changes allow shapes that are the same, but projected into dataspaces with different ranks to be detected correctly, and also contains code to project a dataspace into greater/lesser number of dimensions, so the I/O can proceed in a faster way. These changes also contain several bug fixes and _lots_ of code cleanups to the MPI datatype creation code. Many other misc. code cleanup are included as well... Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode (h5committested on trunk)
* [svn-r19077] Purpose: Fix bug 1951Neil Fortner2010-07-161-0/+2
| | | | | | | | | | | | Description: A bug introduced in 1.8.5 causes local heap data blocks to be mis-aligned when sizeof_offsets + 2*sizeof_lengths is not a multiple of 8. In this case, the address of the data block as stored in the heap prefix is aligned but the actual data block is not. This causes files created with these sizes to be corrupted, and prevents uncorrupted files with these sizes to be unreadable. Modified local heap code to account for alignment. Tested: jam, amani, linew (h5committest)
* [svn-r19053] Purpose:Jonathan Kim2010-07-071-25/+30
| | | | | | | | | | | | Add --no-dangling-links option to h5ls. Description: Related to "Bug 1830 - Following an dangling external link in h5ls should set non-zero return code." If --no-dangling-links option is specified and any dangling link is found, return exit code 1 (error). Merged from hdf5 trunk r19051 Tested: jam, amani, heiwa
* [svn-r19029] added new cmake files for testingAllen Byrne2010-06-221-0/+2
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* [svn-r19000] Removed and added files in CMake Resources folderAllen Byrne2010-06-141-1/+3
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* [svn-r18962] Purpose:Mike McGreevy2010-06-031-0/+1
| | | | Add Acknowledgments file to 1.8 branch
* [svn-r18946] Purpose:Jonathan Kim2010-06-021-0/+11
| | | | | | | | | | | | | Support follow symbolic links. Description: Merged from hdf5 trunk r18943. Add '--follow-symlinks' option to follow symbolic links (soft and external). Update help page according to RM. Remove some warning messages from compiler. Tested: jam
* [svn-r18928] New feature:Albert Cheng2010-06-011-0/+1
| | | | | | | | | | Added ibm-flags to display the IBM XL compilers version information so that configure can report them in the configure summary and the libhdf5.settings file. For now, only the C compiler (xlc) versions are displayed. Also moved the C compiler options setting from ibm-aix to ibm-flags. Tested: NCSA Blue-print, both 32 and 64 bit modes.
* [svn-r18905] Updated with new name of CMake.txtAllen Byrne2010-05-261-1/+1
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* [svn-r18829] Updated with the newly added packed bit test files.Albert Cheng2010-05-171-1/+3
| | | | Tested: bin/chkmanifest'ed in Jam.
* [svn-r18817] Added scripts to compile and run installed examples. The ↵Larry Knox2010-05-141-0/+8
| | | | | | scripts are installed with the examples, and there is one script to run the scripts for all hl examples and another to run the scripts for all the examples. Tested: amani, jam, linew (h5committest).
* [svn-r18797] updated with added and deleted files for the h5dump packed-bits ↵Albert Cheng2010-05-131-2/+11
| | | | feature tests.
* [svn-r18773] Add files to support building library with CMakeAllen Byrne2010-05-121-0/+60
| | | | Tested: Local linux
* [svn-r18744] Updated with the three new expected output files forAlbert Cheng2010-05-071-0/+3
| | | | the packed-bits tests.
* [svn-r18574] Description:Quincey Koziol2010-04-151-0/+1
| | | | | | | | | | | | | | | | | | | | | | | Bring r18571 from trunk to 1.8 branch: Bring r18542 from metadata journaling "merging" branch to trunk: Bring new object header pin/unpin & protect/unprotect routines and split-out object header chunk proxy changes from metadata_journaling branch to "merging" branch, along with some other minor tweaks to clean up compiler warnings, etc. Also: clean up chunk protect/unprotect calls when allocating or freeing space in a chunk, optimize metadata accumulator code to avoid some re-reading of information from the file, refactor H5O_pin/H5O_unpin from way they are done on the merging branch back to way they were previously done on trunk, other minor code cleanups, etc. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode (h5committested on trunk)
* [svn-r18554] Update. I added vms/test/H5srcdir_str.h and ↵Raymond Lu2010-04-141-0/+2
| | | | vms/c++/test/H5srcdir_str.h. No test is needed.
* [svn-r18427] Purpose:Jonathan Kim2010-03-181-1/+1
| | | | | | | | | | | | | Fix for bug1814 - NPOESS: h5repack doesn't handle references to the groups as an element of a dataset Description: Merged from hdf5 trunk r18425 handles object reference to named-datatype as well. Add test cases. Tested: jam
* [svn-r18424] Upgraded all project files to VS2008. Allen Byrne2010-03-181-2/+1
| | | | | | Changed batch files by removing VS2005 and IVF91 options. Added libsettings project to behave like h5tinit.vcproj. Updated Manifest
* [svn-r18422] Description:Quincey Koziol2010-03-181-0/+8
| | | | | | | | | | | | | | | | | | | | | | | Bring r18413:18420 from trunk to 1.8 branch: - unify srcdir query, etc. - Move libhdf5.settings string out of H5Tinit.c Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.2 (amazon) in debug mode Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
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