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* [svn-r17374] Description:Quincey Koziol2009-08-181-0/+1
| | | | | | | | | | | Bring r17365 from trunk to 1.8 branch: Final merge of changes from sblock_mdc branch back to trunk. The superblock is now managed by the metadata cache. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r17294] Updated for newly added files.Albert Cheng2009-08-011-0/+2
| | | | Tested by bin/chkmanifest.
* [svn-r17260] add test cases for h5diffPeter Cao2009-07-291-0/+2
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* [svn-r17244] Description:Quincey Koziol2009-07-271-0/+1
| | | | | | | | | | | Bring r17243 from trunk to 1.8 branch: Refactor how the layout message is created/written/read in the dataset's object header. Tested on: FreeBSD/32 6.3 (duty) in debug mode (change h5committested on trunk)
* [svn-r17113] Maintenance: Removed duplicated entry from the MANIFEST file.Elena Pourmal2009-06-251-1/+0
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* [svn-r17107] Added new windows build examples batch fileAllen Byrne2009-06-251-0/+1
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* [svn-r17055] Added missing windows vnet project files.Allen Byrne2009-06-161-0/+2
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* [svn-r17041] New perf_serial project filesAllen Byrne2009-06-121-0/+2
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* [svn-r16920] Description:Quincey Koziol2009-05-051-0/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Merge these trunk revisions which occurred during the 1.8.3 release code freeze back to the 1.8 branch: From Quincey: 16845 16847 16849 16851 16858 16869 16897 From Ray: 16859 16880 From Allen: 16863 Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16802] Purpose: Fix bug 1516Neil Fortner2009-04-201-0/+1
| | | | | | | | | | | Description: h5repack previously would not take named datatypes into consideration when copying datasets and attributes. This would cause extra anonymous datatypes in the target file at best, and cause errors halfway through the repacking at worst. h5repack should now always handle named datatypes correctly. Named datatypes are also now converted to the native type when -n is given. Tested: jam, linew, smirom (h5committest)
* [svn-r16712] Purpose: Fix bug 1423Neil Fortner2009-04-081-0/+1
| | | | | | | | | | | | | | Description: Versions of the library between 1.3.0 and 1.6.3 have a bug which prevents them from opening any file that does not have the root group's symbol table information cached in the root group's entry in the superblock. Prior to 1.8 this was not an issue as this information was always cached. However, 1.8.0 stopped writing this information (which is not required by the file format specification), and these older versions can therefore not read files created or last written by versions 1.8.0 to 1.8.2. This fix modifies the library to once again add this information to the superblock (when using the old file format). Tested: jam, linew, smirom (h5committest)
* [svn-r16595] Purpose: fix bug 1189Neil Fortner2009-03-231-0/+1
| | | | | | | | | | | Description: Some files apparently exist in the wild which have corrupt symbol table messages on the root group. These files can be opened by 1.6 (which uses the cached information in the superblock) but not by 1.8. This patch fixes 1.8 and 1.9 so they can now open these files, and will correct them if necessary. Also fix some potential (rare) problems with array datatype versions. Tested: jam (parallel; h5committest not working on linew or smirom)
* [svn-r16519] merge 16518 from trunkPedro Vicente Nunes2009-02-261-3/+5
| | | | | | have 2 expected outputs for 2 h5ls runs depending if run on a big or little endian machine. Configure.in was modified to export a variable carrying endianess information to testh5ls.sh. This script then compares the current run with 2 expected outputs, one for a big-endian machine (linew was used to generate the output), other for little endian (jam was used to generate the output) the way h5ls prints types, it starts searching for NATIVE types first. One solution would be h5ls not to detect these native types, using for example the same print datatype function that h5dump does, that would make the output look the same on all platforms ("32-bit little-endian integer" would be printed instead). Drawback, this "native" information would not be available. Other solution is to have not one but 2 expected outputs and make the shell script detect the endianess and compare with one output or other tested: jam, linew
* [svn-r16463] merge from trunkPedro Vicente Nunes2009-02-111-0/+2
| | | | | | | | | | | | | | | | | | | | Bug fix: for compound types, the not comparable test for members was not done Solution: for compound types, recursively apply that check Two new cases are added 1) the compound type has a different number of members. Message printed is <obj1> has X members <obj2> has Y members Where X and Y are the number of members of each compound type being compared 2) the compound type has not comparable types (for example a double and an int at the same index) In this case the message Comparison not possible: object1 is of class1 and object2 is of class2 Is replaced with Comparison not possible: object1 has a class1 and object2 has a class2 Modified the test generator program to have these 2 cases Added a shell run for these 2 cases Tested: h5committest
* [svn-r16402] Description:Quincey Koziol2009-02-031-0/+1
| | | | | | | | | | | Bring r16401 back from trunk: Correct error introduced in r16353 with layout version, and add test so it gets caught earlier. Tested on: FreeBSD/32 6.3 (duty) Too minor to require h5committest
* [svn-r16351] merge 16348Pedro Vicente Nunes2009-01-261-0/+8
| | | | | | | | #1368 (E1) h5diff: implement "not comparable" messages. Implemented RFC. The new option is <-c, --compare List objects that are not comparable> added some test cases tested: windows, linux
* [svn-r16310] merge 16299Pedro Vicente Nunes2009-01-141-0/+3
| | | | | | | | | | | Print a message of Storage: information not available When displaying storage information for VL and dataset region types Added 2 shell runs that display this information #818 Tested: windows, linux
* [svn-r16216] Updated for removed file.Albert Cheng2008-12-231-1/+0
| | | | Tested by bin/chkmanifest.
* [svn-r16205] Description:Quincey Koziol2008-12-181-0/+1
| | | | | | | | | | | Bring r16204 back from trunk: Moved v1 B-tree debugging routines into separate module and thinned out header files a bit. Tested on: FreeBSD/32 6.3 (duty) in debug mode Too minor to require h5committest
* [svn-r16203] Maintenance: Added new VMS command file to the MANIFEST file.Elena Pourmal2008-12-161-0/+1
| | | | Platforms tested: My MAC with the chkmanifest script.
* [svn-r16198] Description:Scot Breitenfeld2008-12-151-1/+0
| | | | | Removed the fortran file: ./fortran/src/H5fortran_flags.f90 which is no longer needed.
* [svn-r16181] Description:Quincey Koziol2008-12-111-1/+1
| | | | | | | | | | | | Bring r16180 back from trunk: Rename the current chunk indexing routines module for B-tree indices to better reflect their purpose, and to make the upcoming extensible array index module fit in better. Tested: FreeBSD/32 6.3 Too minor to require h5committest
* [svn-r16123] Add vms/tools/h5stat/make.comRaymond Lu2008-11-241-0/+1
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* [svn-r16087] Purpose: Port H5Pset_chunk_cache, H5Pget_chunk_cache, and ↵Neil Fortner2008-11-171-0/+1
| | | | | | | | H5Dget_access_plist functions to 1.8 branch Tested: kagiso, jam (trunk version tested with h5committest)
* [svn-r15912] Bug fix: #933Albert Cheng2008-10-211-1/+0
| | | | | | | The information of libhdf5_fortran.settings are all included in libhdf5.settings now. Remove it from the source. Tested: kagiso with fortran and C++.
* [svn-r15887] Purpose: Close bug 1332Neil Fortner2008-10-161-0/+3
| | | | | | | | | Description: Improved external link traversal of h5dump. h5dump will now properly avoid all cycles, even those spanning multiple files. Improvement to the output of committed datatypes. Committed datatypes are now checked for uniqueness (like other objects). Tests added for these cases. Tested: kagiso, linew, smirom (h5committest)
* [svn-r15871] Eliminate -c option and make that behavior the default and ↵Pedro Vicente Nunes2008-10-151-1/+0
| | | | | | return 2 instead of -1 on error status Tested: windows, linux
* [svn-r15817] move h5jam testfiles to its own testfiles folderPedro Vicente Nunes2008-10-081-8/+7
| | | | tested: linux
* [svn-r15813] Purpose: Add new source code and tests to WindowsScott Wegner2008-10-081-0/+8
| | | | | | | | | | Description: Many new source files were added from the freespace branch. This checkin adds the code to Windows as well. Note: Some tests are still failing on Windows, but this checkin brings us closer to fixing them. In particular, freespace test fails on compile (Quincey is working on it), and the DLL links test fails at runtime (I'll look into it) Tested: VS2005 on WinXP
* [svn-r15805] Purpose: Add option to h5ls to enable external link traversal.Neil Fortner2008-10-071-0/+4
| | | | | | | | Description: Added -E option to h5ls. When set, this alows h5ls to enter external files (currently only through an external link). The -r option by itself will no longer allow h5ls to traverse external links. Tested: kagiso, linew, smirom (h5committest)
* [svn-r15801] Description:Quincey Koziol2008-10-071-0/+16
| | | | | | | | | | | | | | | | | | | | | | | Bring r15800 back from trunk: - File free space branch changes through r15794 Tested on: Mac OS X/32 10.5.5 (amazon) in debug mode Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15759] move h5copy testfiles to /tools/h5copy/testfilesPedro Vicente Nunes2008-10-021-2/+4
| | | | tested: linux
* [svn-r15750] move h5repack test files to /tools/h5repack/testfilesPedro Vicente Nunes2008-10-011-17/+19
| | | | tested: linux
* [svn-r15745] Move h5diff testfiles to /tools/h5diff/testfiles Pedro Vicente Nunes2008-10-011-78/+73
| | | | Tested: linux
* [svn-r15726] Description:Scot Breitenfeld2008-09-301-4/+7
| | | | Made changes to reflect the changes made in the fortran directory which merged the fortran trunk into the 1.8 branch.
* [svn-r15720] Added a file with user block data to be used by the h5repack ↵Pedro Vicente Nunes2008-09-291-1/+1
| | | | windows shell script only Note: for the unix shell script this file is not used
* [svn-r15698] renamed input text files to have the extension .txtPedro Vicente Nunes2008-09-251-7/+8
| | | | tested: linux
* [svn-r15697] renamed configuration files to have the extension .confPedro Vicente Nunes2008-09-251-7/+7
| | | | tested: linux
* [svn-r15695] update manifestPedro Vicente Nunes2008-09-241-0/+1
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* [svn-r15694] 1)Pedro Vicente Nunes2008-09-241-8/+12
| | | | | | | | | | | | | | Bug fix #1281 The TEXTFPE was described in the usage (read floats in scientific notation) but was not implemeneted. Solution: remove TEXTFPE from the help system and have the TEXTFPE input type do the same thing as TEXTPF currently does to support backwards compatibility (the format read for both TEXTFPE and TEXTPF is %f) added a test 2) renamed configuration files to have the extension .conf tested: windows, linux
* [svn-r15672] Add missing test file, re-add it to the manifest (sorry).Neil Fortner2008-09-221-0/+1
| | | | Tested: kagiso
* [svn-r15671] Description:Quincey Koziol2008-09-221-1/+0
| | | | Update MANIFEST w/changes to files.
* [svn-r15669] Purpose: Add feature requested in bug #1282Neil Fortner2008-09-211-0/+5
| | | | | | | | | | Description: Adds capability to h5ls to traverse external links when the -r (recursive) option is given. Changes to the way absolute path names are patched in h5trav.c. Changes to the way recursive traversal starting from a non-root group is handled (which also fixes some preexisting issues). Tests added for these cases. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15583] Purpose: Add Windows Fortran DLL export code to separate DEF file.Scott Wegner2008-09-031-0/+1
| | | | | | | | | | Description: In in Fortran source code, there was a great deal of code that was necessary for Windows DLLs, and ignored for others systems. To remove some of the bloat in the source code, we moved these definitions into separate *.def file, which will be used on by the Windows DLL project. Tested: VS2005 on WinXP Note: The Windows project file will still need to be edited-- I will check that in soon.
* [svn-r15581] Added script to build h5perf_serial in standalone mode.Christian Chilan2008-09-021-0/+1
| | | | Tested on kagiso, smirom, and linew.
* [svn-r15508] Scott Wegner2008-08-211-0/+4
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* [svn-r15486] Purpose: Allow library to shut down properly when objects have ↵Neil Fortner2008-08-191-0/+1
| | | | | | | | | | | | | | | | reference count > 1. Description: Added a new field 'app_count' to H5I_id_info_t struct, to track the reference count on an id due to the application. the old 'count' field tracks the total. Generally any id visible to the application gets placed in app_count. Added app_ref boolean parameter to H5I_inc_ref, H5I_dec_ref, H5I_register, H5I_clear_type, and a few other functions, to specify whether the operation(s) being performed on the id(s) are due to the application (TRUE) or not (FALSE). Test added for this case. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15434] new file for h5diff testPedro Vicente Nunes2008-08-051-0/+1
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* [svn-r15160] Purpose: Separate Windows function macro definitions to win32defs.hScott Wegner2008-06-051-0/+1
| | | | | | | | | | | | | | Description: In library code, we try not to use system calls directly, but instead use the HD{function} macro instead. This way, we can map special versions of the call on particular systems. Previously, it was all done in H5private.h. However, in an effort to clean up platform-specific definitions, we move all of the Windows macros into a separate file, win32defs.h. This way, we can use the non-Posix versions that Visual Studio sends warnings about. Some macros are set specifically in the platform-specific header files. Then, any macros left unset will be set by the "default" implementation in H5private.h. This checkin also cleans up various source files to use the HD* macros when possible. Tested: VS2005 on WinXP VS.NET on WinXP h5committest (kagiso, linew, smirom)
* [svn-r15136] Purpose:Albert Cheng2008-06-041-0/+1
| | | | | | | | | | | | | | bug fixes. Description: Added code to create an empty hdf5 (named h5diff_empty.h5) in order to test if h5diff compares correctly an empty hdf5 vs. a non-empty one. Tested: Tested in kagiso of h5diffgentest itself. Verified by h5dump that h5diff_empty.h5 was indeed empty. Then "h5diff h5diff_empty.h5 h5diff_basic1.h5" returned 0 (should have returned non-zero).
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