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* [svn-r19782] Fix CMake testing for links_env test which requires an ↵Allen Byrne2010-11-151-0/+1
| | | | | | | | environment variable at test run-time. Modified runTest.cmake file to allow optional ENV_VAR and ENV_VALUE to be passed. runTest.cmake requires a reference file, added links_env.out to testfiles folder. Also updated root CMakeLists.txt to output a message when unsopported options are configured with the PARALLEL option. CMake will still generate files. Tested: windows and local linux
* [svn-r19781] Fix for bug #1930:Vailin Choi2010-11-151-0/+2
| | | | | | 1) Move the test for H5D_EXT_PREFIX in links.c to a separate file: links_env.c 2) links_env.c will be used by testlinks_env.sh to test for the environmental variable H5D_EXT_PREFIX in searching for the external linked file.
* [svn-r19751] Purpose:Jonathan Kim2010-11-091-0/+3
| | | | | | | | | | | | | | Fixed Bug# 1979 Output from h5ls -rdlS on nested compound datatypes is difficult to parse. Description: Update to add curly brackets for the nested compound members, when S (--simple) option is used with -l (--label), so user can tell which members blong to which compound type. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32)
* [svn-r19726] [BZ2072]Add compare output to expected test for help and ↵Allen Byrne2010-11-041-0/+2
| | | | | | version options of mkgrp. Tested: local linux
* [svn-r19712] Purpose:Jonathan Kim2010-11-021-0/+2
| | | | | | | | | | | | | | | Fixed h5diff to handle variable-length strings in a compound dataset correctly. Also variable-length string array in a compound dataset. Bug #1989. Description: Garbage values were displayed when h5diff compared variable-length strings (or string array) in a compound type dataset. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (Mac32)
* [svn-r19633] Purpose:Jonathan Kim2010-10-181-0/+1
| | | | | | | | | | Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option. Description: Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. This is expected to be failed. Tested: jam, amani, heiwa
* [svn-r19617] Purpose:Mike McGreevy2010-10-151-0/+1
| | | | | | | | | | Merge accum_tests branch back to the trunk. Description: Changes consist of addition of tests for H5Faccum.c source code, as well as some fixes that address some discovered bugs in the metadata accumulator on several corner cases. Tested: h5committested
* [svn-r19605] Purpose:Jonathan Kim2010-10-151-1/+0
| | | | | | | | | | | Backout the previous changes (r19598): (Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option.) Description: Some failure occurred on talwit, so backout the changes and will put it back after the fix. (Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. This is expected to be failed. Merged from hdf5 trunk r19598.)
* [svn-r19598] Purpose:Jonathan Kim2010-10-141-0/+1
| | | | | | | | | | Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option. Description: Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. Expected to be failed. Tested: jam, amani, heiwa
* [svn-r19596] Added new file ./config/ibm-aix6.x.Albert Cheng2010-10-141-0/+1
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* [svn-r19527] Add clear generated objects commands to test blocks.Allen Byrne2010-10-061-1/+1
| | | | | | Add configurefile command to copy CTestCustom to build folder. Tested: local linux
* [svn-r19458] Add CMake tests for check-vfd; includes new vfdTest.cmake ↵Allen Byrne2010-09-211-0/+1
| | | | | | script and OPTION HDF5_TEST_VFD Tested: local linux
* [svn-r19445] Update for previous checkin r19443Jonathan Kim2010-09-201-0/+1
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* [svn-r19409] Purpose: Jonathan Kim2010-09-161-0/+8
| | | | | | | | | | | Add extra test cases for bug1975 h5diff - support recursive comparison on group when specified as an object. Description: Additional tests for combination of group recursive and --follow-symlinks with multi-linked external links with several files (same name/strucure). Tested: jam, amani, heiwa
* [svn-r19406] Purpose:Jonathan Kim2010-09-161-1/+8
| | | | | | | | | | | Add --exclude-path option Description: Specified path to an object will be excluded from comparing the two files or two groups. If group is specified all the member objects will be excluded. Related to "1890: h5diff excluding object for file comparison via command line" Tested: jam, amani and heiwa
* [svn-r19403] Update to H5REPACK tests for layout info required a grep script ↵Allen Byrne2010-09-161-0/+1
| | | | | | | | like runTest.cmake. Update CMakeLists.txt for new h5repack layout tests. Tested: local linux
* [svn-r19400] Purpose:Jonathan Kim2010-09-161-1/+18
| | | | | | | | | | Fix for Bug1975 h5diff - support recursive comparison on group when specified as an object Description: Compare member objects and groups recursively when two files or groups are specified to be compared. Support parallel diff and handling symbolic links accordingly. Tested: jam, amani, heiwa
* [svn-r19389] Purpose:Jonathan Kim2010-09-151-0/+1
| | | | | | | | | | Fix for Bug1896 h5repack - changing layout to COMPACT does not work Description: Make h5repack be able to convert a layout to COMPACT for small size dataset as default. Also add verifying layout changes in our test script. Tested: jam, amani, heiwa
* [svn-r19370] Removed entry for m4 directory.Larry Knox2010-09-101-1/+0
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* [svn-r19369] Update MANIFEST for new m4 directory and macros. Directory and ↵Larry Knox2010-09-101-0/+6
| | | | | | files are for reconfigure and therefore marked _DO_NOT_DISTRIBUTE_. Tested on jam.
* [svn-r19363] When mandatory filter failed to write data chunks, the datasetRaymond Lu2010-09-091-0/+1
| | | | | | | couldn't close (bug 1260). The fix releases all resources and closes the dataset but returns a failure. Tested with h5committest - jam, heiwa, amani.
* [svn-r19325] Added parallel build commands.Allen Byrne2010-08-311-0/+2
| | | | | | | Corrected use/name of source folder aliases. Duplicated FindMPI.cmake so that non-c++ compiler is found first (recommemded commands did not work). Tested: local linux with mpich
* [svn-r19282] Fix test scripts (Cmake needs to capture output yet)Allen Byrne2010-08-231-1/+1
| | | | | | linux script needed -R and double compare: Tested: local linux
* [svn-r19260] Change Cmake to allow a local zlib header to be used in ↵Allen Byrne2010-08-201-5/+1
| | | | | | | | | | | H5Zdelate module. Corrected use of "SKIP" message in cmake. Corrections to cmake configuration files (for cmake external projects). Community suggested changes. Tested: local linux
* [svn-r19253] Description:Quincey Koziol2010-08-191-0/+5
| | | | Add missing files from r19252 checkin.
* [svn-r19211] Updated cmake file with community suggested changes for cmake ↵Allen Byrne2010-08-101-2/+2
| | | | | | | | install files. Removed configure check for fseek Tested: local linux
* [svn-r19203] new expected output file for BZ1953 fixAllen Byrne2010-08-091-0/+1
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* [svn-r19179] Description:Quincey Koziol2010-08-051-0/+3
| | | | | | | | | | | | | | | | | | | | | | Bring changes from Coverity branch back to trunk: r19079 & 19080: [BZ1942] h5dump -u to generate XML, it does not respect the -m option xml version of dump_data function didn't check for use of fp_format variable. Added new test expected file for committed bug 1942 r19103, 19104 & 19105: [BZ1821] h5repack -v did not display correct output for a selected compression. Needed new test for comparing output of -v option. Added new test file for solution to BZ1821 BZ1821 - Bring test changes from the shell script actually used. Tested on: Mac OS X/32 10.6.4 (amazon) debug & production (h5committested on branch)
* [svn-r19133] Description:Quincey Koziol2010-07-281-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Correct traversal of user-defined links (including external links) to retain path information of object, allowing H5Iget_name() queries to work quickly (without searching entire destination file). This required some refactoring and addition of a mechanism to detect if a "fast" query was performed (for the tests). Minor code cleanups, etc. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r19108] Corrected cmake location of ConfigureChecks.cmakeAllen Byrne2010-07-201-1/+1
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* [svn-r19107] Move Resources folder to config/cmakeAllen Byrne2010-07-201-17/+17
| | | | Tested: Local Linux
* [svn-r19092] Description:Quincey Koziol2010-07-191-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring "shape same" changes from LBL branch to trunk. These changes allow shapes that are the same, but projected into dataspaces with different ranks to be detected correctly, and also contains code to project a dataspace into greater/lesser number of dimensions, so the I/O can proceed in a faster way. These changes also contain several bug fixes and _lots_ of code cleanups to the MPI datatype creation code. Many other misc. code cleanup are included as well... Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r19076] Purpose: Fix bug 1951Neil Fortner2010-07-161-0/+2
| | | | | | | | | | | | Description: A bug introduced in 1.8.5 causes local heap data blocks to be mis-aligned when sizeof_offsets + 2*sizeof_lengths is not a multiple of 8. In this case, the address of the data block as stored in the heap prefix is aligned but the actual data block is not. This causes files created with these sizes to be corrupted, and prevents uncorrupted files with these sizes to be unreadable. Modified local heap code to account for alignment. Tested: jam, amani, linew (h5committest)
* [svn-r19059] Brought changes from hdf5_1_8 to add version information for ↵Larry Knox2010-07-091-0/+8
| | | | | | fortran and c++ compilers in libhdf5.settings file and configure output (r18836), to install examples as part of make install (r18680), and to provide scripts to compile and run the examples after they are installed (r18817). Tested with new/h5committest on amani, heiwa, and jam.
* [svn-r19052] Add thlink-1.ls entry back which was mistakenly removed from ↵Jonathan Kim2010-07-071-0/+1
| | | | previous checkin.
* [svn-r19051] Purpose:Jonathan Kim2010-07-071-25/+29
| | | | | | | | | | | Add --no-dangling-links option to h5ls. Description: Related to "Bug 1830 - Following an dangling external link in h5ls should set non-zero return code." If --no-dangling-links option is specified and any dangling link is found, return exit code 1 (error). Tested: jam, amani and heiwa
* [svn-r19028] added new cmake files for testingAllen Byrne2010-06-221-0/+2
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* [svn-r19005] Purpose:Mike McGreevy2010-06-151-0/+1
| | | | | | | | | | | | | | | | | | | | | | | Commit metadata tagging framework. Description: This check-in contains a new framework whose goal is to apply a tag value to each new entry in the metadata cache as it is created. This tag value is such that it relates each piece of metadata to the HDF5 object that it belongs to (dataset, group, et cetera). This changeset includes the framework that applies the tags as well as a suite of tests to verify correct tag application, though does not yet make use of the tag values to flush/evict individual objects. Please refer to the "flush/evict individual objects" RFC for further discussion of these changes. Tested: jam, amani, linew (h5committest) liberty, abe, blue print
* [svn-r18999] Removed and added files in CMake Resources folderAllen Byrne2010-06-141-1/+3
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* [svn-r18963] Purpose:Mike McGreevy2010-06-031-0/+1
| | | | Add acknowledgments file to top level of hdf5 trunk distribution.
* [svn-r18943] Purpose:Jonathan Kim2010-06-021-0/+11
| | | | | | | | | | | | Support follow symbolic links. Description: Add '--follow-symlinks' option to follow symbolic links (soft and external). Update help page according to RM. Remove some warning messages from compiler. Tested: jam, amani and linew
* [svn-r18942] Allen Byrne2010-06-011-1/+0
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* [svn-r18929] New feature:Albert Cheng2010-06-011-0/+1
| | | | | | | | | | Added ibm-flags to display the IBM XL compilers version information so that configure can report them in the configure summary and the libhdf5.settings file. For now, only the C compiler (xlc) versions are displayed. Also moved the C compiler options setting from ibm-aix to ibm-flags. Tested: NCSA Blue-print, both 32 and 64 bit modes.
* [svn-r18906] Updated with new name of CMake.txtAllen Byrne2010-05-261-1/+1
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* [svn-r18793] Add files to support building library with CMakeAllen Byrne2010-05-131-0/+60
| | | | Tested: Local linux
* [svn-r18571] Description:Quincey Koziol2010-04-151-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r18542 from metadata journaling "merging" branch to trunk: Bring new object header pin/unpin & protect/unprotect routines and split-out object header chunk proxy changes from metadata_journaling branch to "merging" branch, along with some other minor tweaks to clean up compiler warnings, etc. Also: clean up chunk protect/unprotect calls when allocating or freeing space in a chunk, optimize metadata accumulator code to avoid some re-reading of information from the file, refactor H5O_pin/H5O_unpin from way they are done on the merging branch back to way they were previously done on trunk, other minor code cleanups, etc. Tested on FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18457] Purpose:Jonathan Kim2010-03-251-0/+1
| | | | | | | | | | | | | | | | | | | | Add test cases for bug1797 - h5repack doesn't handle references in compound and vlen datatypes for attributes Description: Add test cases ahead as waiting for H5Acopy to complete the fix. 1. obj references in attr of compound type 2. region references in attr of compound type 3. obj references in attr of vlen type 4. region references in attr of vlen type NOTE: This test is skipped now and will be included when code part is completed. ( H5Acopy() replaces copy_attr() ) The file&code can be used for lib portion test. Tested: jam, amani, linew
* [svn-r18431] Added libsettings project to solution files.Allen Byrne2010-03-191-0/+1
| | | | Updated Manifest
* [svn-r18425] Purpose:Jonathan Kim2010-03-181-1/+1
| | | | | | | | | | | | Fix for bug1814 - NPOESS: h5repack doesn't handle references to the groups as an element of a dataset Description: handles object reference to named-datatype as well. Add test cases. Tested: jam, amani, linew
* [svn-r18420] Description:Quincey Koziol2010-03-181-3/+0
| | | | | | | | | Re-run bin/reconfigure to catch up with recent rearrangements, remove some unused srcdir headers and duplicated code in main test header. Tested on: Mac OS X/32 10.6.2 (amazon) w/debug & prod Linux/32 2.6 (jam)
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