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* [svn-r20207] removed duplicate line.Peter Cao2011-03-091-1/+0
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* [svn-r20206] Updated manifest and source code for fixing h5dump -y -o problemPeter Cao2011-03-091-0/+1
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* [svn-r20205] Add tall-6.ddl from previous commit r20204.Jonathan Kim2011-03-081-0/+1
| | | | Test file for Bug 2183 - h5dump -y -o prints out attribute values
* [svn-r20168] BZ2048: Add -E --enable-error-stack option to h5dump.Allen Byrne2011-02-281-0/+2
| | | | Tested: local linux, heiwa, windows
* [svn-r20153] Move ext lib handling for ext project building to a common ↵Allen Byrne2011-02-241-0/+1
| | | | | | macro. Update HDF5 project to use HDFMacros.cmake file. Add test properties for test ordering. Tested: local linux, windows
* [svn-r20141] Bring 1.8 r20139 cmake and windows changes to trunkAllen Byrne2011-02-221-2/+5
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* [svn-r20124] Bug fix (ID: 519)Albert Cheng2011-02-181-1/+0
| | | | | | | | The content of bin/config_para_ibm_sp.sh has been added to release_docs/INSTALL_parallel long ago. Just got around to remove it. Tested: no need since nothing refer to config_para_ibm_sp.sh except MANIFEST. Ran bin/chkmanifest.
* [svn-r20112] Merge open_file_pool branch into trunk.Neil Fortner2011-02-171-0/+2
|\ | | | | | | Tested: jam (branch tested with h5committest)
| * [svn-r20064] Purpose: Implement external file cacheNeil Fortner2011-02-081-0/+2
| | | | | | | | | | | | | | | | | | Description: Implements a cache of files opened through external links. Adds the public functions H5Pset_elink_file_cache_size(), H5Pget_elink_file_cache_size(), and H5Frelease_file_cache(). Tested: jam, amani, heiwa (h5committest), fedora 64.
* | [svn-r20108] Purpose:Jonathan Kim2011-02-151-0/+2
|/ | | | | | | | | | | | | | Fixing Bug 2092 - h5dump does not display index for a dataset Description: h5dump skip displaying array indices every certain number when the array type dataset is relatively big. The certain number varies according to the size of each array. This checkin fix the skipping array indices problem. This fix also correct indentation of the dataset data output. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r20054] Created valgrind cacheinit fileAllen Byrne2011-02-071-0/+1
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* [svn-r20044] Fix bz2127 by dynamically allocating storgae for comments.Allen Byrne2011-02-041-0/+1
| | | | Tested: local linux
* [svn-r20013] Change use of variable to allow a SITE name to be defined, to ↵Allen Byrne2011-01-271-0/+1
| | | | using it to extend the build name used in reporting to CDash
* [svn-r19971] Purpose:Jonathan Kim2011-01-211-0/+1
| | | | | | | h5dump: add dangling external link test case as part of Chicago project. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r19956] Removed since its code has been copied to t_shapesame.c.Albert Cheng2011-01-141-1/+0
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* [svn-r19941] Purpose:Albert Cheng2011-01-121-1/+2
| | | | | | | | | | | | | | | | | | | | | | | Moved the two shape same tests from testphdf5 to a separated executables, named t_shapesame. The shape same tests runs too long for testphdf5. In a separated executalbe, it will be easier to separate any errors in testphdf5 sub-tests from the shape same tests. t_shapesame.c: Contains the shape same tests (cloned from t_rank_projection.c) plus a duplicate of "testphdf5.c" for now. After verifying it is correct, more cleanup is needed. testphdf5.c: Removed the two shape same tests (chsssdrpio & cbhsssdrpio). Makefile.am: Makefile.in: Added t_shapesame as a new test executable. Removed t_rank_projections.c from part of testphdf5. testph5.sh.in: Temporary added the "t_shapesame -p" test for testing shape same tests with MPIO-Posix VFD. Tested: h5committested, plus serial jam.
* [svn-r19918] Add hh modifier to signed char printf format string. Added ↵Allen Byrne2011-01-051-0/+2
| | | | | | | h5dump test to verify that signed/unsigned datasets print correctly. Bring solution from 1.8 packed bits fix which solved problem on heiwa with Signed char of 8 bits Tested: local linux
* [svn-r19880] Add new file.Allen Byrne2010-12-081-0/+1
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* [svn-r19782] Fix CMake testing for links_env test which requires an ↵Allen Byrne2010-11-151-0/+1
| | | | | | | | environment variable at test run-time. Modified runTest.cmake file to allow optional ENV_VAR and ENV_VALUE to be passed. runTest.cmake requires a reference file, added links_env.out to testfiles folder. Also updated root CMakeLists.txt to output a message when unsopported options are configured with the PARALLEL option. CMake will still generate files. Tested: windows and local linux
* [svn-r19781] Fix for bug #1930:Vailin Choi2010-11-151-0/+2
| | | | | | 1) Move the test for H5D_EXT_PREFIX in links.c to a separate file: links_env.c 2) links_env.c will be used by testlinks_env.sh to test for the environmental variable H5D_EXT_PREFIX in searching for the external linked file.
* [svn-r19751] Purpose:Jonathan Kim2010-11-091-0/+3
| | | | | | | | | | | | | | Fixed Bug# 1979 Output from h5ls -rdlS on nested compound datatypes is difficult to parse. Description: Update to add curly brackets for the nested compound members, when S (--simple) option is used with -l (--label), so user can tell which members blong to which compound type. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32)
* [svn-r19726] [BZ2072]Add compare output to expected test for help and ↵Allen Byrne2010-11-041-0/+2
| | | | | | version options of mkgrp. Tested: local linux
* [svn-r19712] Purpose:Jonathan Kim2010-11-021-0/+2
| | | | | | | | | | | | | | | Fixed h5diff to handle variable-length strings in a compound dataset correctly. Also variable-length string array in a compound dataset. Bug #1989. Description: Garbage values were displayed when h5diff compared variable-length strings (or string array) in a compound type dataset. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (Mac32)
* [svn-r19633] Purpose:Jonathan Kim2010-10-181-0/+1
| | | | | | | | | | Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option. Description: Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. This is expected to be failed. Tested: jam, amani, heiwa
* [svn-r19617] Purpose:Mike McGreevy2010-10-151-0/+1
| | | | | | | | | | Merge accum_tests branch back to the trunk. Description: Changes consist of addition of tests for H5Faccum.c source code, as well as some fixes that address some discovered bugs in the metadata accumulator on several corner cases. Tested: h5committested
* [svn-r19605] Purpose:Jonathan Kim2010-10-151-1/+0
| | | | | | | | | | | Backout the previous changes (r19598): (Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option.) Description: Some failure occurred on talwit, so backout the changes and will put it back after the fix. (Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. This is expected to be failed. Merged from hdf5 trunk r19598.)
* [svn-r19598] Purpose:Jonathan Kim2010-10-141-0/+1
| | | | | | | | | | Fix for bug# 2040 - h5copy should fail gracefully for expected failure copying to non-exist nested group without -p option. Description: Fixed h5copy to fail gracefully when copying object to non-exist group without -p option. Expected to be failed. Tested: jam, amani, heiwa
* [svn-r19596] Added new file ./config/ibm-aix6.x.Albert Cheng2010-10-141-0/+1
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* [svn-r19527] Add clear generated objects commands to test blocks.Allen Byrne2010-10-061-1/+1
| | | | | | Add configurefile command to copy CTestCustom to build folder. Tested: local linux
* [svn-r19458] Add CMake tests for check-vfd; includes new vfdTest.cmake ↵Allen Byrne2010-09-211-0/+1
| | | | | | script and OPTION HDF5_TEST_VFD Tested: local linux
* [svn-r19445] Update for previous checkin r19443Jonathan Kim2010-09-201-0/+1
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* [svn-r19409] Purpose: Jonathan Kim2010-09-161-0/+8
| | | | | | | | | | | Add extra test cases for bug1975 h5diff - support recursive comparison on group when specified as an object. Description: Additional tests for combination of group recursive and --follow-symlinks with multi-linked external links with several files (same name/strucure). Tested: jam, amani, heiwa
* [svn-r19406] Purpose:Jonathan Kim2010-09-161-1/+8
| | | | | | | | | | | Add --exclude-path option Description: Specified path to an object will be excluded from comparing the two files or two groups. If group is specified all the member objects will be excluded. Related to "1890: h5diff excluding object for file comparison via command line" Tested: jam, amani and heiwa
* [svn-r19403] Update to H5REPACK tests for layout info required a grep script ↵Allen Byrne2010-09-161-0/+1
| | | | | | | | like runTest.cmake. Update CMakeLists.txt for new h5repack layout tests. Tested: local linux
* [svn-r19400] Purpose:Jonathan Kim2010-09-161-1/+18
| | | | | | | | | | Fix for Bug1975 h5diff - support recursive comparison on group when specified as an object Description: Compare member objects and groups recursively when two files or groups are specified to be compared. Support parallel diff and handling symbolic links accordingly. Tested: jam, amani, heiwa
* [svn-r19389] Purpose:Jonathan Kim2010-09-151-0/+1
| | | | | | | | | | Fix for Bug1896 h5repack - changing layout to COMPACT does not work Description: Make h5repack be able to convert a layout to COMPACT for small size dataset as default. Also add verifying layout changes in our test script. Tested: jam, amani, heiwa
* [svn-r19370] Removed entry for m4 directory.Larry Knox2010-09-101-1/+0
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* [svn-r19369] Update MANIFEST for new m4 directory and macros. Directory and ↵Larry Knox2010-09-101-0/+6
| | | | | | files are for reconfigure and therefore marked _DO_NOT_DISTRIBUTE_. Tested on jam.
* [svn-r19363] When mandatory filter failed to write data chunks, the datasetRaymond Lu2010-09-091-0/+1
| | | | | | | couldn't close (bug 1260). The fix releases all resources and closes the dataset but returns a failure. Tested with h5committest - jam, heiwa, amani.
* [svn-r19325] Added parallel build commands.Allen Byrne2010-08-311-0/+2
| | | | | | | Corrected use/name of source folder aliases. Duplicated FindMPI.cmake so that non-c++ compiler is found first (recommemded commands did not work). Tested: local linux with mpich
* [svn-r19282] Fix test scripts (Cmake needs to capture output yet)Allen Byrne2010-08-231-1/+1
| | | | | | linux script needed -R and double compare: Tested: local linux
* [svn-r19260] Change Cmake to allow a local zlib header to be used in ↵Allen Byrne2010-08-201-5/+1
| | | | | | | | | | | H5Zdelate module. Corrected use of "SKIP" message in cmake. Corrections to cmake configuration files (for cmake external projects). Community suggested changes. Tested: local linux
* [svn-r19253] Description:Quincey Koziol2010-08-191-0/+5
| | | | Add missing files from r19252 checkin.
* [svn-r19211] Updated cmake file with community suggested changes for cmake ↵Allen Byrne2010-08-101-2/+2
| | | | | | | | install files. Removed configure check for fseek Tested: local linux
* [svn-r19203] new expected output file for BZ1953 fixAllen Byrne2010-08-091-0/+1
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* [svn-r19179] Description:Quincey Koziol2010-08-051-0/+3
| | | | | | | | | | | | | | | | | | | | | | Bring changes from Coverity branch back to trunk: r19079 & 19080: [BZ1942] h5dump -u to generate XML, it does not respect the -m option xml version of dump_data function didn't check for use of fp_format variable. Added new test expected file for committed bug 1942 r19103, 19104 & 19105: [BZ1821] h5repack -v did not display correct output for a selected compression. Needed new test for comparing output of -v option. Added new test file for solution to BZ1821 BZ1821 - Bring test changes from the shell script actually used. Tested on: Mac OS X/32 10.6.4 (amazon) debug & production (h5committested on branch)
* [svn-r19133] Description:Quincey Koziol2010-07-281-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Correct traversal of user-defined links (including external links) to retain path information of object, allowing H5Iget_name() queries to work quickly (without searching entire destination file). This required some refactoring and addition of a mechanism to detect if a "fast" query was performed (for the tests). Minor code cleanups, etc. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.4 (amazon) in debug mode Mac OS X/32 10.6.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.6.4 (amazon) w/parallel, in debug mode
* [svn-r19108] Corrected cmake location of ConfigureChecks.cmakeAllen Byrne2010-07-201-1/+1
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* [svn-r19107] Move Resources folder to config/cmakeAllen Byrne2010-07-201-17/+17
| | | | Tested: Local Linux
* [svn-r19092] Description:Quincey Koziol2010-07-191-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring "shape same" changes from LBL branch to trunk. These changes allow shapes that are the same, but projected into dataspaces with different ranks to be detected correctly, and also contains code to project a dataspace into greater/lesser number of dimensions, so the I/O can proceed in a faster way. These changes also contain several bug fixes and _lots_ of code cleanups to the MPI datatype creation code. Many other misc. code cleanup are included as well... Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
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