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* Merge pull request #1600 in HDFFV/hdf5 from ↵Ray Lu2019-04-181-0/+6
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:HDFFV-10658-performance-drop-from-1-8 to develop * commit 'b5ef82a1786605ae86502bc82086047720b7d4ca': (21 commits) Moving the handling of null prefix into H5_combine_path. Changing the prefix of external file and VDS from empty string to null for performance improvement. Improving the condition checking of empty string. Replacing string operation strdup with assignment for empty string. Adding back links_env.out which I accidentally removed in my previous commit. Taking out two unnecessary diff output files. Taking out unnecessary diff files for output. Adding some comments. Some coding style changes. Adding the standard output files for the external_env.c and vds_env.c tests. Small correction for my previous commit. Forgot to add external_common.c and external_common.h. Updated CMake for the splitting of external.c and vds.c. Minor fix: removal of unnecessary enum values. Minor fixes: updating the test vds_env.c according to the set up of vds.c. Left out this file in previous commit. HDFFV-10658 - setting and getting properties in API context: 1. switched to use the existing H5F_prefix_open_t for enum type; 2. put the common private function used by external.c and external_env.c into external_common.c This commit basically has the following changes: 1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties. 2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables. 3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get. HDFFV-10658: I left out this file in my previous commit. HDFFV-10658: 1. moving HDgetenv to dataset initialization stage to reduce the overhead; 2. restoring the retrieval of three vol properties to H5P_get instead of using API context to prepare for Quincey's upcoming refactoring work. ...
| * Some coding style changes.Songyu Lu2019-04-111-0/+2
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| * Merge branch 'develop' of ↵Songyu Lu2019-04-091-0/+1
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8
| * | HDFFV-10658 - setting and getting properties in API context:Songyu Lu2019-04-091-0/+4
| | | | | | | | | | | | | | | 1. switched to use the existing H5F_prefix_open_t for enum type; 2. put the common private function used by external.c and external_env.c into external_common.c
* | | Renamed the HDF5_TEST_VOL option to HDF5_TEST_PASSTHROUGH_VOL.Dana Robinson2019-04-111-1/+1
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* | HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change.Vailin Choi2019-04-061-0/+1
|/ | | | This also addresses HDFFV-10255: H5Sencode/decode performance issue.
* Fixed the MANIFESTDana Robinson2019-03-071-1/+2
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* Fixes for JNI updatesJordan Henderson2019-02-121-0/+26
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* CMake script changes to simplify executionAllen Byrne2019-02-081-2/+5
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* Remove obsolete fileAllen Byrne2019-02-061-1/+0
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* Add new files to MANIFEST.Larry Knox2019-02-011-0/+10
| | | | Update permissions for raybsub to 755.
* Added data file for test and updated MANIFESTBinh-Minh Ribler2019-01-251-0/+1
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* Fixed the MANIFESTDana Robinson2019-01-091-6/+6
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* Add PGI toolchainAllen Byrne2019-01-021-0/+1
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* Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Vailin Choi2019-01-021-6/+10
|\ | | | | | | | | | | | | | | develop Resolve conflicts: Conflicts: test/Makefile.am
| * Merge pull request #1400 in HDFFV/hdf5 from ↵Dana Robinson2018-12-311-0/+1
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:openmpi_tweaks to develop * commit 'd6c2a96ac2f103d90b96d5b39814810e6a31ef99': Updated the parallel install docs. Eliminated the need for a separate script variable. Added a helpful message to the flush script. Added a shell script so we can run the parallel flush test on OpenMPI.
| | * Merge branch 'develop' into openmpi_tweaksDana Robinson2018-12-311-1/+20
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| | * | Added a shell script so we can run the parallel flush testDana Robinson2018-12-201-0/+1
| | | | | | | | | | | | | | | | on OpenMPI.
| * | | Merge branch 'develop' into yay_pluginsDana Robinson2018-12-281-1/+3
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| * | | Added a simple test for registration of VOL connector plugins.Dana Robinson2018-12-271-6/+9
| | | | | | | | | | | | | | | | | | | | Autotools only for right now, but this will be fleshed out in future work.
* | | | Changes based on feedback from pull request.Vailin Choi2018-12-311-2/+2
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* | | | Fix for HDFFV-10659: The library abort with "infinite loop closing library"Vailin Choi2018-12-281-1/+2
| |/ / |/| | | | | | | | | | | | | | | | | | | | after deleting attributes in densed storage. The fix: When deleting attribute nodes from the name index v2 B-tree, if an attribute is found in the intermediate B-tree nodes, which may be merged/redistributed in the process, we need to free the dynamically allocated spaces for the intermediate decoded attribute.
* | | Merge branch 'develop' into md_cache_logging_squashDana Robinson2018-12-281-0/+5
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| * | Merge pull request #1407 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2018-12-211-0/+5
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '991996b25122ff010b9af1bbb6cc05be491ce038': Remove unused CMake files Update option text Add reference file to list HDFFV-10656 remove moved source HDFFV-10656 Add CHECK_VOL support to CMake
| | * | Remove unused CMake filesAllen Byrne2018-12-211-3/+0
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| | * | HDFFV-10656 Add CHECK_VOL support to CMakeAllen Byrne2018-12-201-0/+8
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* | | | Squash merge of MDC logging changes.Dana Robinson2018-12-211-1/+3
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* | | Merge branch 'develop' into vol_tweaksDana Robinson2018-12-201-0/+4
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| * | HDFFV-10664 Add new functions and constants to java interfaceAllen Byrne2018-12-191-0/+4
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* | Moved private native VOL connector functions to H5VLnative_private.h.Dana Robinson2018-12-201-0/+1
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* | Split the native VOL connector code into multiple files andDana Robinson2018-12-201-0/+7
|/ | | | moved the attribute code over.
* HDFFV-10632 update new filesAllen Byrne2018-12-141-0/+2
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* HDFFV=10632 test cleanupAllen Byrne2018-12-061-12/+3
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2018-12-051-3/+3
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '55e87e5b86aacbb37c57614cd2e869541291caad': (51 commits) Correct Windows build. Refactor allocating & releasing pass through wrapper objects. Fix typo Remove duplicated comment. Add a couple of missing prototypes for static routines, along with updating a comment from VOL plugin -> connector. Switch H5VL_class_value_t from unsigned to int, and add "invalid" ID value. Correct "make check-vol" regression test target. Switch H5VL_class_value_t from enum to unsigned integer Add support for "make check-vol", along with a few minor cleanups, etc. Refactor infrastructure for setting FAPL information from environment variables during testing, including connecting native, pass-through, and dynamically loaded VOL connectors. Also bring native and pass-through VOL connectors into alignment, removing the "H5VLnative_private.h" header. Remove example VOL connector, since it's been superceded by the pass-through VOL connector in the src subdirectory. Add pass-through VOL connector Update API tracing info for VOL functions and regenerate trace macros for VOL API calls. Added 'notify' callback for async requests; switched VOL class and info comparison to return comparison value as parameter, so they can return error values; "cancelled" -> "canceled"; switched order of 'wrap_object' and 'free_wrap_ctx' management callbacks. Add using FAPL from h5_fileaccess() to more tests. Remove unused test for unimplemented routine. Switch loc_params to VOL callbacks to pass struct by pointer instead of by value. Add info_to_str and str_to_info "management" callbacks for serializing and deserializing a connector's info object. Revert some of the changes to support the original property list value of metadata read attempts. Add VOL connector info to the flie access property list returned from H5Fget_access_plist(). Also, other misc. cleanups, etc. ...
| * Refactor infrastructure for setting FAPL information from environmentQuincey Koziol2018-11-281-1/+0
| | | | | | | | | | | | variables during testing, including connecting native, pass-through, and dynamically loaded VOL connectors. Also bring native and pass-through VOL connectors into alignment, removing the "H5VLnative_private.h" header.
| * Remove example VOL connector, since it's been superceded by the pass-throughQuincey Koziol2018-11-281-1/+0
| | | | | | | | VOL connector in the src subdirectory.
| * Add pass-through VOL connectorQuincey Koziol2018-11-281-0/+2
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| * Remove unused test for unimplemented routine.Quincey Koziol2018-11-221-1/+0
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| * Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-221-0/+5
| |\ | | | | | | | | | stackable_vol
| * \ Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-181-0/+1
| |\ \ | | | | | | | | | | | | stackable_vol
| * \ \ Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-11-041-6/+4
| |\ \ \ | | | | | | | | | | | | | | | stackable_vol
| * \ \ \ Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Quincey Koziol2018-10-251-1/+3
| |\ \ \ \ | | | | | | | | | | | | | | | | | | stackable_vol
| * | | | | Squashed commit of private branch changes to support stackable VOL plugins.Quincey Koziol2018-10-251-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | modified: test/dsets.c
* | | | | | HDFFV-10632 - split stderr and stdout in cmakeAllen Byrne2018-12-031-18/+32
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* | | | | Move wait_H5init.cmake up to config/cmake.Larry Knox2018-11-201-1/+1
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* | | | | Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into ↵Larry Knox2018-11-201-0/+1
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| * | | | HDFFV-10601: Adding the new hdf5/tools/test/perform/chunk_cache.c to MANIFEST.Songyu Lu2018-11-161-0/+1
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* | | | Add script and changes to wait for H5Tinit.cLarry Knox2018-11-141-0/+5
|/ / / | | | | | | | | | | | | | | | | | | Add more sample batch scripts, specifically for sbatch, not for knl cross compile. Don't run parallel tests when no parallel test script is configured in HDF5options.cmake.
* | | Merge pull request #1313 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:vol_tweaks to ↵Dana Robinson2018-10-301-1/+0
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit 'ee12aff2ca89e92b99590f29096794a84c6bacdc': Removed a couple of extraneous commas from VOL example. Cleaned up VOL example. Updated MANIFEST file. Fixed VOL example to use a platform-independent format specifier for size_t.
| * | | Updated MANIFEST file.Dana Robinson2018-10-301-1/+0
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