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* Remove obsolete fileAllen Byrne2020-10-071-1/+0
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* OESS-98 merge with clang-format changesAllen Byrne2020-09-251-0/+2
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* Fix manifestAllen Byrne2020-09-241-1/+2
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* Add code owners fileAllen Byrne2020-09-241-0/+1
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* Update actions - split push/pull-request commitsAllen Byrne2020-09-241-0/+3
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* CMake and script changes for clang-formatAllen Byrne2020-09-041-0/+2
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* Add testfilesAllen Byrne2020-08-151-0/+7
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* TRILABS-277 Use JIRA number as #ifdefAllen Byrne2020-08-151-0/+1
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* HDFFV-9984 Add options to merge/prune external links during repackAllen Byrne2020-08-141-0/+19
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* Clean up private / package / static namespace issues (function naming, whichQuincey Koziol2020-08-061-0/+1
| | | | | | header file, FUNC_ENTER / LEAVE, etc). Removed remaining personal email addresses from library source code (still needs cleaned from other directories). Misc. warning, style, and whitespace cleanup.
* Correct h5diff filenamesAllen Byrne2020-07-291-4/+4
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-07-171-0/+1
|\ | | | | | | | | | | * commit '9d3ea366d4bf3278e8260f4d5cdcc88cb4b61c56': Update MANIFEST. Add new test to Cmake. Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
| * Update MANIFEST.vchoi2020-07-161-0/+1
| | | | | | | | Add new test to Cmake.
* | Tools refactorAllen Byrne2020-07-151-0/+3
|/ | | | | | Move error_stack setup to tools library Add structure for h5dump properties Eliminate duplicated h5diff functions Use properties structure in place of argument lists.
* Clean up warningsQuincey Koziol2020-06-281-0/+2
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* Fix MANIFESTDana Robinson2020-06-101-0/+2
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* Update MANIFEST for removal of older warnings files.Larry Knox2020-05-201-19/+1
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* Correct pathAllen Byrne2020-05-071-1/+1
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* Add github actionsAllen Byrne2020-05-061-0/+2
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* TRILAB-244 separate CXX warnings and errors from CAllen Byrne2020-04-231-0/+3
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* TRILAB-192 - cleanup edits and match CMake CXX to autotoolsAllen Byrne2020-04-131-0/+1
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* Merge branch 'develop' of ↵Jacob Smith2020-04-071-4/+51
|\ | | | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into feature/vfd_splitter_mirror_a
| * Move intel warnings to subfolder, update autotools filesAllen Byrne2020-04-061-2/+2
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| * Flag construction must be after compiler detectionAllen Byrne2020-04-051-0/+1
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| * TRILAB-192 add c++ and fortran warnings build systems one fileAllen Byrne2020-04-051-0/+11
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| * TRILAB-192 add comparable clang flagsAllen Byrne2020-03-271-0/+4
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| * Update the MANIFEST for the autoconf/cmake shared warnings files.David Young2020-03-241-3/+34
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* | Tidying of Mirror VFD.Jacob Smith2020-04-071-1/+1
| | | | | | | | | | | | | | * Rename server-stop utility to mirror_server_stop. * Remove external dependency on bzero(). * Modify test/use_common to use only the public API. * Rename internal bitswap macro to follow convention.
* | Add Splitter VFD to library.Jacob Smith2020-03-131-0/+21
|/ | | | | | | | | | | | | | | * "Simultaneous and equivalent" Read-Write and Write-Only channels for file I/O. * Only supports drivers with the H5FD_FEAT_DEFAULT_VFD_COMPATIBLE flag for now, preventing issues with multi-file drivers. Add Mirror VFD to library. * Write-only operations over a network. * Uses TCP/IP sockets. * Server and auxiliary server-shutdown programs provided in a new directory, `utils/mirror_vfd`. * Automated testing via loopback ("remote" of localhost).
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-02-241-0/+2
|\ | | | | | | | | * commit 'd24afb233383aa6c945fad430eb1b66edc4d6c63': Add missing MANIFEST entry, ./doc/code-conventions.md .
| * Add missing MANIFEST entry, ./doc/code-conventions.md .David Young2020-02-201-0/+2
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* | HDFFV-11036 add file compare test processAllen Byrne2020-02-241-0/+1
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* Merge pull request #2341 in HDFFV/hdf5 from ~DYOUNG/werror:thread_id to developDavid Young2020-02-051-0/+1
|\ | | | | | | | | | | | | | | * commit 'cefacee21b5ad569e2394b32793648e1b80f3d6b': src/H5Eint.c: #include H5TSprivate.h for H5TS_thread_id() definitions. Change thread IDs to uint64_t from unsigned long, per Quincey's suggestion. Add thread_id.c to the MANIFEST and the CMakeLists.txt per Allen's request. Replace pthread_self_ulong() with H5TS_thread_id(). The POSIX Threads implementation ought to be portable to any system that has POSIX Threads. On Windows, I use the same API call as before.
| * Add thread_id.c to the MANIFEST and the CMakeLists.txt per Allen'sDavid Young2020-02-031-0/+1
| | | | | | | | request.
* | HDFFV-10996 - add java vol testsAllen Byrne2020-02-031-0/+1
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* Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-01-191-0/+1
|\ | | | | | | | | | | | | | | | | * commit '66a94df13b3801547523f1ea90bc84fe2ee6824b': Removed UIUC from copyright, added helpful comment. Updated MANIFEST Added a config file for ARM (Tested on a Raspberry Pi 3B+ w/ gcc 6). Tidying from code review. Fixed stack and frame size warnings. Not complete, but fixes most of the easier cases.
| * Updated MANIFESTDana Robinson2020-01-171-0/+1
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* | Create common build system files for warningsAllen Byrne2020-01-171-0/+6
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* Squashed commit of the token_refactoring branch:Dana Robinson2020-01-161-2/+6
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* Add test for reference shutdown issueJerome Soumagne2020-01-151-0/+1
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* Merge pull request #2173 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-12-211-0/+25
|\ | | | | | | | | | | | | | | | | | | * commit '576e713924b1802a64ae2f6655d2389d70fadfd1': Add new h5diff files Fix compile statement order HDFFV-10976,-10980 Init obj_type before calling H5Rget_obj_type3 Add unknown define for h5dump ref objects Standalone doesn't use h5test implementation. HDFFV-10980 - h5diff uses new ref APIs
| * Add new h5diff filesAllen Byrne2019-12-211-0/+3
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| * HDFFV-10980 - h5diff uses new ref APIsAllen Byrne2019-12-191-0/+22
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* | Refactor all the 'H5VL_*_optional' callbacks to move the type of operation outQuincey Koziol2019-12-201-0/+1
|/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | of the va_list, so it's at least possible for another connector to know what the operation is and decide whether to implement it or not. Added a new VOL sub-class called "introspect" where callbacks that report information about the connector or container can be placed. Added an 'opt_query' callback to this sub-class, for a connector to report back to the library whether a particular optional callback operation is supported. Also added a 'get_conn_cls' introspection callback, to retrieve the H5VL_class_t of a connector (either the "current" connector, H5VL_GET_CONN_LVL_CURR, or the terminal connector, H5VL_GET_CONN_LVL_TERM). Moved the "post open" operation from a file 'specific' operation to a file 'optional' operation, now that it's possible to detect (with the 'opt_query' introspection callback) whether a VOL connector implements an optional operation, without just returning an error. Added new internal VOL helper routines: H5VL_object_is_native, to determine if an object is in (or is a) native file, and H5VL_file_is_same, to determine if two objects are in (or are) the same terminal VOL connector's container. (And moved the special handling for FILE_IS_EQUAL operation out of internal VOL callback routine into H5VL_file_is_same) Made new dataset 'get' operation for H5Dvlen_get_buf_size, aligning it better with other 'get' operations in API. Fixed several issues with pass-through connectors, which are now passing the 'make check-passthrough-vol' tests again. A bunch of warning and style cleanups as well.
* TRILABS-135 Add clang analyzersAllen Byrne2019-12-111-0/+7
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* Add missing filenamesAllen Byrne2019-12-091-2/+3
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* Add new test referenceAllen Byrne2019-12-081-0/+2
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* Apparently, + has no special meaning, and neither does \+, in so-calledDavid Young2019-11-121-0/+1
| | | | | | | | "obsolete" / POSIX "basic" regular expressions. Also, not every version of `sed` out there supports the `-E` option. So delete the -E flag and use the regex `[^/][^/]*` instead of `[^/]+`. Add config/netbsd to the MANIFEST.
* Add new H5R API that abstracts object, region and attribute reference typesJerome Soumagne2019-10-081-2/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Also support references to external files Add new H5T_REF type and type conversion routines Support conversion from H5T_REF_OBJ/DSET_REG to H5T_REF Add H5Treclaim() API to reclaim memory of vlen/reference types Deprecate H5Dvlen_reclaim() Fix H5T_vlen_reclaim() and H5T_reclaim() to use private callback Add H5T_ref_reclaim() Move previous H5R APIs to H5Rdeprec.c Clean up H5Ocopy Separate H5O_copy_expand_ref() to H5Ocopy_ref() Add support for copying new reference types Clean up deprecated routines to go through VOL and same code path Fix return codes in existing trefer.c test Rename trefer.c to trefer_deprec.c trefer.c is for new references Add performance test for trefer Add additional obj_copy_ref test Make use of tokens and blobs to store references Skip blob encoding for object references Start adding new reference examples
* Add 'blob' callbacks to VOL, along with a native implementation to store themQuincey Koziol2019-10-081-0/+1
| | | | | | | in the global heap, and changed the VL datatype conversion code to use blobs. Move encode/decode of sequence lengths into VL datatype callbacks, from native VOL blob routines.
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