| Commit message (Collapse) | Author | Age | Files | Lines |
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Purpose:
Added C++ wrapper for Packet Table API.
Description:
Added macro for high-level C++ library (LIBH5CPP_HL), which changes every
Makefile.in.
Added directories for high-level C++ library (though currently only Packet
Table API is supported).
Added both C++ source and tests.
Platforms tested:
sleipnir, mir, modi4
Misc. update:
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Forgot to run reconfigure
Description:
Forgot to run bin/reconfigure after removing my debug output from configure.in.
Shame on me!
Platforms tested:
mir
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Automake version upgrade
Description:
Upgraded automake version from 1.6.2 to 1.9.5.
Changed bin/reconfigure script to use automake 1.9.5.
Changed configure.in and Makefiles to use new FCFLAGS and FC variables
instead of FFLAGS and F9X.
Automake and configure should now do the lion's share of the work
supporting Fortran 9X; macros in acsite.m4 are now mostly unused (will
be cleaned later).
Altered how configure handles pmake; now root-level Makefile.in is
processed by bin/reconfigure to have a .MAKEFLAGS target, since
automake no longer allows us to define unused variables.
Configure now always checks for C++ compiler even if it is not
used, since automake thinks this is the Right Thing To Do and
will break otherwise.
Platforms tested:
Sol, copper, heping, mir, sleipnir, eirene, pommier, kelgia, modi4.
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Removed GASS configuration and software packages associated with
it. The following software are no longer configurable.
checking for main in -lcrypto... yes
checking for SSL_get_version in -lssl... yes
checking globus_common.h usability... yes
checking globus_common.h presence... yes
checking for globus_common.h... yes
checking for globus_module_activate in -lglobus_common... yes
checking for main in -lglobus_gass_cache... yes
checking for main in -lglobus_gaa... yes
checking for main in -lglobus_gss... yes
checking for main in -lglobus_gss_assist... yes
checking for main in -lglobus_io... yes
checking for main in -lglobus_gass_transfer_assist... yes
checking for main in -lglobus_gass_transfer... yes
checking for globus_gass_open in -lglobus_gass_file... yes
Platforms tested:
h5committested (but copper was down.) tested in modi4 too.
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Libtool upgrade
Description:
HDF5 was using libtool 1.4.2. Upgraded to libtool 1.5.14.
Platforms tested:
verbena, heping, pommier, copper, modi4, arabica
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New feature.
Description:
Add the scaleoffset internal library filter.
Solution:
Platforms tested:
heping, copper, arabica
Misc. update:
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Purpose:
Bug fix
Description:
modi4 dies during build with strange errors.
The root cause of these is a two-year-old hack in HDF5's libtool
script that only takes effect on IRIX.
Solution:
Edited the libtool hack (by editing ltmain.sh) to correct a bug in
the hack.
Also made sure that compiler-specific DEFAULT_LIBS are used
when linking.
Platforms tested:
sleipnir, copper, modi4, sol
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Bug fix
Description:
pmake (on modi4, for instance) complains about undefined variables
if it is run without the -V flag, which turns those errors to warnings.
Solution:
Added test to configure.in to see if $MAKE will allow Makefiles
with undefined variables. If not, sets -V flag in AM_MAKEFLAGS.
Ensured that all custom make targets use AM_MAKEFLAGS.
Also defined all variables that caused errors in top-level Makefile.am.
This means that pmake can be used to build hdf5 *from the top level
only*. To run make from a subdirectory, still need to use -V flag
(or use make or gmake).
Platforms tested:
modi4, heping, copper, sleipnir
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Purpose:
Bug fix
Description:
Parallel builds were breaking in tools/lib
Solution:
talign didn't realize it depended on libh5tools.la because its
dependencies listed the full path (../../tools/lib/libh5tools.la).
Changed this, and made similar changes in a couple of other
directories.
This checkin should also add the --foreign flag to every Makefile.in
Platforms tested:
sleipnir (minor change)
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New feature
Description:
Add basic code for new B-tree implementation. They don't do much yet,
aren't hooked up to anything yet and the format may change, but I'd like to
start getting them into the daily tests.
Platforms tested:
FreeBSD 4.11 (sleipnir) w/parallel
Too minor to require h5committest
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Bug fix
Description:
Found the permanant fix to automake/CVS dependency problem
Solution:
Added AM_MAINTAINER_MODE macro to configure.in.
Now automake will never try to regenerate Makefiles, Makefiles.in,
configure, H5config.h, etc. when they are out of date, nor will it
print any warnings.
Developers should be very very careful to use reconfigure script,
and can add --enable-maintainer-mode flag to configure on heping
to regenerate these files correctly.
Platforms tested:
heping sleipnir copper
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Bug fix
Description:
Configuration files' timestamps were incorrect.
Solution:
Update Makefiles.in. Also added correct paths to autotools on heping,
so heping build should be able to re-generate configuration files even
if they are still broken.
Platforms tested:
sleipnir
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Bug fix
Description:
Dependencies between configure files (aclocal, configure.in, configure,
Makefiles.am and .in) are still causing Makefiles to try to run autotools
during build.
Solution:
Committed all Makefiles.in to update their timestamps.
As a temporary measure, forcibly prevented automake from running
autotools during build by redefining the variables it uses.
Platforms tested:
sleipnir (No changes to Makefile content)
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Bug fix
Description:
Different compilers use different flags to include Fortran module files
Solution:
Changed boilerplate to use configure variable rather than hardcoded -M flag.
Platforms tested:
sleipnir, sol, copper
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Configuration feature
Description:
HDF5 now uses automake to generate Makefiles
Solution:
Makefile.in files are now generated from Makefile.am files.
To reconfigure (after chaning a Makefile.am or configure.in):
/bin/sh bin/reconfigure.sh
Platforms tested:
Many
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Description: Removed PABLO from the source
Solution:
Platforms tested: arabica with 64-bit, copper with parallel,
heping with GNU C and C++ and PGI fortran (but
I disabled hl, there is some weird problem only
on heping: F9XMODFLAG is not
propagated to the Makefile files
Misc. update:
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add hl fortran
Description:
Solution:
Platforms tested:
linux (absfot and pgf90)
solaris (32 and 64 bit)
AIX
note : HP gives a compiling error , to be fixed in the future
Misc. update:
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insert high level library into main library
Description:
configure.in has a new entry (--enable-hl, disable-hl) it is on by default
the configure message prints info regarding if hl is enabled or not
the tree is
/hl
/hl/src
/hl/test
Solution:
Platforms tested:
linux
solaris
AIX
Misc. update:
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Updated the copyright notice--mostly by rearranging
some text to make them consistent.
Solution:
Platforms tested:
"h5committested"--sol is down, so, no SUn test.
Misc. update:
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Bug fix
Description:
Correct 'make check-install' failure by restoring previous behavior.
Platforms tested:
FreeBSD 4.8 (sleipnir)
should be the same for all platforms, h5committest not needed.
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Code cleanup
Description:
Simplify installation for examples.
Platforms tested:
h5committestted
Misc. update:
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Update
Description:
Revamped the configuration system. The configurations for the Fortran
and C++ libraries are no longer separate from the "main"
configuration system. This involved removing the "configure*" and
"aclocal.m4" files from the fortran/ and c++/ subdirectories. Also
merging settings in the config/ subdirectories into the main config/
subdirectory.
Fortran header files had to be modified a little for Linux. It was
checking if it was a Linux machine by some #defines, however with the
-std=c99 switch, these defines weren't there. I added a check for
some other ones which should be there whether the -std=c99 switch is
used or not.
Platforms tested:
Verbena (Fortran & C++)
Sol (Fortran & C++)
Copper (Fortran & C++)
Modi4 (Parallel, Fortran, & C++)
Misc. update:
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Improvement, IMO.
Description:
The parallel tests were run after all tools tests. For some parallel
systems, that could be a long time. Since tools are better tested
in serial mode and one would like to see the results of parallel
tests sooner in parallel mode, I moved the parallel tests before
the tools tests.
Platforms tested:
Only tested in Eirene, both serial and parallel modes.
No need for three platforms test since this is just a simple
Makefile change.
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Bug fix and feature
Description:
The patch to Makefile.in failed if an empty directory of fortran/examples
was left behind by a previous build.
Solution:
Attempted to put it in config/conclude.in just became a mess since
it is hard to predict when we will include examples in the subdirs
or not.
Borrow the structure of install-examples and do some handcode per
interface. The Makefile.in of each interface (C, Fortran, C++)
controls everything. Not very systematic but pretty clean for this
case.
Platforms tested:
h5committested.
Also tested in modi4 with various combinations of fortran, c++
enabled.
Misc. update:
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Feature
Description:
Added a simple way to run make check in the fortran/examples too.
This would be a good exercise of the installed h5fc command.
(A more systematic way, similar to install-examples, should be
implemented.)
Platforms tested:
h5committested--that only made sure the change did not break anything.
Also tested "make check-install" in modi4 to make sure the changes do
work.
Misc. update:
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Update
Description:
Updated Copyright statement.
Platforms tested:
None needed
Misc. update:
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Code cleanup
Description:
Remove the 'configure.lineno' file during "make distclean"
Platforms tested:
FreeBSD 4.5 (sleipnir)
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New Feature Addition
Description:
Added support for Pablo configuration by our configure script.
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Feature
Description:
Added the check-install target to verify if installed software is
working. Currently only run "make check" in examples.
Platforms tested:
eirene
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Bug Fix
Description:
``make uninstall-doc'' wasn't working properly. Some files would be
left behind in the installed source tree. The fix I put in was too
heavy-handed as it wiped out the entire doc tree that was installed
and would remove any other files which were installed there.
Solution:
Executed the ``make uninstall-examples'' command if uninstalling the
docs. Fixed how the java Tutorial examples were being removed (they
weren't). Essentially used the PUB_SUBDOCS macro to help remove them.
Platforms tested:
Linux
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Feature
Description:
Change examples to use the installed h5cc to compile the examples
programs. That will test the correctness of the installed software.
Removed examples from make targets in the top level so that it does
not get invoked in make or make check since one cannot compile
the example programs until after "make install" has completed.
Platforms tested:
eirene and modi4 (parallel)
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Purpose:
Feature Add
Description:
Added "install-example" and "install-all" to the Makefile system.
The behaviour of the "make install*" options:
make install - Installs binaries, libraries, include
files, and example programs.
make install-examples - Installs only the example programs.
The directories are:
${prefix}/doc/hdf5/examples/{c,c++,fortran}
make install-all - Install the binaries, libraries, include
files, example programs, and
documentation. The whole kit-n'-caboodle.
make uninstall-examples - Get rid of those example files (but not
the ${prefix}/doc/hdf5/examples/...
directories)
There's a new bin/ program which helps create directories which are
deeply nested called "mkdirs". It's a simple shell script.
Platforms tested:
Linux
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Bug fix
Description:
Moved the position of the target of perform so that it is
included in compiling but not in the 'check' target.
Platforms tested:
eirene.
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new feature
Description:
Added perform programs to test the HDF5 library performance. Programs
are installed in directory perform/.
Platforms tested:
eirene
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Bug Fix
Description:
uninstall-doc wasn't declared at the top level Makefile.
Solution:
Added it.
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Update
Description:
Remove the doc from the SUBDIRS macro since we don't have to go to
that directory for all make options. Add doc to the "cleaning"
actions...
Platforms tested:
Linux
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Feature Add
Description:
Added the ``install-doc'' command to the Makefile.
Platforms tested:
Linux, Solaris.
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Added support for compiling in subdirectories.
Platforms tested:
Solaris, IRIX (O2K)
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Makefile.in:
acconfig.h:
src/H5F.c:
src/H5FDdpss.c:
src/H5FDdpss.h:
src/H5config.h.in:
test/dpss_read.c:
test/dpss_write.c:
Changed the name DPSS to GRIDSTORAGE since that is the real name
of the API from ANL. DPSS is just one of the protocols it can use.
Changed a bug in the --with-ssl option.
Makefile.in:
Removed the copying of Makefile.dist since it caused problems
when doing a make distclean in a --srcdir configured directory.
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files.
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----------------------
./MANIFEST
./configure.in
./configure [REGENERATED]
Added more checking for `make' features.
./Makefile.in
./doc/Makefile.in
./doc/html/Makefile.in
./doc/html/Tutor/Makefile.in
./examples/Makefile.in
./pablo/Makefile.in
./src/Makefile.in
./test/Makefile.in
./testpar/Makefile.in
./tools/Makefile.in
./config/commence.in
./config/conclude.in
./config/depend.in [REMOVED]
./config/depend1.in [NEW]
./config/depend2.in [NEW]
./config/depend3.in [NEW]
./config/depend4.in [NEW]
./config/dependN.in [NEW]
The directory search stuff was moved into commence.in, thereby
shortening the Makefile.in prologues.
./doc/html/Dependencies [NEW]
./doc/html/Tutor/Dependencies [NEW]
./examples/Dependencies [NEW]
./src/Dependencies [NEW]
./test/Dependencies [NEW]
./testpar/Dependencies [NEW]
./tools/Dependencies [NEW]
The `.distdep' files were all renamed to `Dependencies' to make them
more obvious. They are required (but may be empty) in every directory
that has a Makefile.in that ends with @CONCLUDE@ (you'll get an
obvious error from make if you forgot to create one).
./bin/trace
./src/H5.c
Added H5E_major_t and H5E_minor_t although tracing only prints the
integer value.
./src/H5E.c
./src/H5Epublic.h
Added tracing information.
./src/H5FDcore.c
./src/H5FDfamily.c
./src/H5FDgass.c
./src/H5FDmpio.c
./src/H5FDsec2.c
./src/H5FDstdio.c
Fixed places where FUNC_LEAVE() evaluated it's argument more than
once.
Added tracing information.
Wrapped long lines.
./config/gnu-flags
Fixed a syntax error when we don't have a gnu compiler.
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configure.in:
Modified to support install-doc.
configure:
Derived from configure.in via autoconf.
INSTALL_MAINT:
Moved to doc/html/Lib_Maint.html
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./configure [REGENERATED]
./Makefile.in
Fixed a couple spelling errors.
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----------------------
./Makefile.in [1.3]
./examples/Makefile.in [1.3]
./pablo/Makefile.in [1.3]
./src/Makefile.in [1.3]
./test/Makefile.in [1.3]
./testpar/Makefile.in [1.3]
./tools/Makefile.in [1.3]
./config/commence.in [1.3]
./config/conclude.in [1.3]
./config/depend.in [1.3]
Added a `.PATH' target for Irix pmake which is identical to
the VPATH used by most other `make' programs. Irix 6.5 (or
6.4?) and later `make' ignores VPATH.
Started all beginning-of-line comments with `##' instead of
just `#' because Irix `pmake' barfs on things like the
following because it sees the `# if' as a directive:
# make will barf on the following line
# if running Irix pmake
./config/commence.in [1.3]
Added empty definitions for optional `make' macros because
Irix pmake complains if it sees a macro which has never been
defined. The main body of the Makefiles can redefine these
macros to whatever they need.
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be in the tests target, so did not put it there.
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----------------------
./Makefile.in
Running `make' in the top directory recurses into the examples
directory also except if the make target is one of: lib,
progs, check, test, _test, install, uninstall.
./examples/Makefile.in
Changed programs into tests, which just means that `make
tests' does what `make progs' used to do and that `make check'
runs the executables.
./src/H5Tconv.c
Fixed a typo in the unsigned-to-signed native converter for
large types to small types. This fixes a bug on baldric and
possibly other machines for the `dtypes' test.
Also fixed a signed vs. unsigned warning.
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----------------------
./Makefile.in
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
./config/commence.in
./config/conclude.in
./config/dec-osf4.x
./config/depend.in
./config/freebsd
./config/linux-gnu
./config/linux-gnulibc1
./config/linux-gnulibc2
./config/solaris2.x
./examples/Makefile.in
./src/Makefile.in
./test/Makefile.in
./testpar/Makefile.in
./tools/Makefile.in
./tools/testh5dump.sh
Changes that allow hdf5 to be configured and compiled in a
directory other than the source directory. This is especially
useful if you want to concurrently compile with different
compilers and/or compile flags, or if the hdf5 source is on
read-only media like a CDROM. The changes were surprisingly
easy ;-) Here's what you can do now...
$ mkdir /tmp/build1 # or something
$ cd /tmp/build1
$ /cdrom/hdf5/configure # where ever the source is
$ make
Paul, you'll have to change the testh5toh4 script similar to
the way I changed testh5dump.sh. I started working on it but
then gave up because of a number of problems: (1) I had to
comment out all the tests that let h5toh4 choose the output
file name because it always tried to put the output file in
the same directory as the input file, (2) if path names are
used during the h4 dump then they interfere with the
diff. The test works fine when run in the source directory,
but try this instead:
$ gunzip <hdf5-1.1.67.tar.gz |tar xf -
$ chmod -R ugo-w hdf5-1.1.67
$ mkdir build
$ cd build
$ ../hdf5-1.1.67/configure
$ make check
Dan, I didn't modify the pablo/Makefile.in because I have no
way to test it. I think all you need to do is add a couple
lines before the @COMMENCE@ line and add a couple search
directories for header files. Anyway, it seems like almost an
exact duplicate of the src/Makefile.in, so it shouldn't be a
problem...
./Makefile.in
Removes a few more temporary files during make clean and
distclean.
./configure.in
I fixed the creation of the time-stamp files so that the
initial make doesn't have to regenerated all the makefiles
(only GNU make users will see any change).
./src/H5R.c
Changed a return type from `intn' to `int' for an API
function.
./src/H5detect.c
Added the volatile qualifier to a couple more variables.
./tools/h5tools.c
Fixed a compiler warning about an unused local.
./tools/h5toh4.c
Initialized `optind' to 1 because it's zero on my system. It
should always be one on a unix system.
./tools/testh5toh4
Redirected "broken pipe" messages to /dev/null so outut is
formatted correctly.
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----------------------
./INSTALL
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
Improvements for parallel library. If you have a properly
working mpicc you should be able to just say:
$ CC=mpicc ./configure
and you will see
checking for mpirun... /usr/local/mpi/bin/mpirun
checking for parallel support files... skipped
checking how to run on one processor...
/usr/local/mpi/bin/mpirun -np 1
checking how to run in parallel...
/usr/local/mpi/bin/mpirun -np $$NPROCS
To quote from the INSTALL file....
*** Parallel vs. serial library
The HDF5 library can be configured to use MPI and MPI-IO for
parallelizm on a distributed multi-processor system. The easy
way to do this is to have a properly installed parallel
compiler (e.g., MPICH's mpicc or IBM's mpcc) and supply that
executable as the value of the CC environment variable:
[NOTE: mpcc is not tested yet]
$ CC=mpcc ./configure
$ CC=/usr/local/mpi/bin/mpicc ./configure
If no such wrapper script is available then you must specify
your normal C compiler along with the distribution of
MPI/MPI-IO which is to be used (values other than `mpich' will
be added at a later date):
$ ./configure --enable-parallel=mpich
If the MPI/MPI-IO include files and/or libraries cannot be
found by the compiler then their directories must be given as
arguments to CPPFLAGS and/or LDFLAGS:
$ CPPFLAGS=-I/usr/local/mpi/include \
LDFLAGS=-L/usr/local/mpi/lib/LINUX/ch_p4 \
./configure --enable-parallel=mpich
If a parallel library is being built then configure attempts
to determine how to run a parallel application on one
processor and on many processors. If the compiler is mpicc
and the user hasn't specified values for RUNSERIAL and
RUNPARALLEL then configure chooses `mpirun' from the same
directory as `mpicc':
RUNSERIAL: /usr/local/mpi/bin/mpirun -np 1
RUNPARALLEL: /usr/local/mpi/bin/mpirun -np $${NPROCS:=2}
The `$${NPROCS:=2}' will be substituted with the value of the
NPROCS environment variable at the time `make check' is run
(or the value 2).
./testpar/Makefile.in
Saying `make check' (or `make test') will run the tests on two
processors by default. If you define NPROCS then that many
processors are used instead:
$ NPROCS=4 make check
./configure.in
Fixed (hopefully) bugs with detecting whether __attribute__
and __FUNCTION__ are special keywords for the compiler.
./Makefile.in
Saying `make install' from the top level directory shows
instructions for using shared libraries.
./config/commence.in
./src/Makefile.in
./test/Makefile.in
./testpar/Makefile.in
./tools/Makefile.in
Moved the @top_srcdir@ into the makefiles because it was
expanded too early and had the wrong value.
./INSTALL
Added a warning that if the wrong version of hdf4 tools are
installed then `make check' will fail in the tools directory.
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----------------------
./INSTALL
Reorganized and added some additional examples.
./MANIFEST
./aclocal.m4 [NEW]
./configure.in
./configure [REGENERATED]
./src/H5config.h.in [REGENERATED]
./bin/ltconfig [NEW]
./bin/ltmain.sh [NEW]
Added tests to determine how to compile shared libraries and
how to link programs with them before the libraries are
installed. Also how to install and uninstall shared
libraries. The configure step also prints the names of the
config files it's trying to load for easier debugging.
./bin/config.guess
./bin/config.sub
Replaced with a newer version from GNU. The changes we made
to that file to report `irix6.x' and `FreeBSD' without version
numbers have been incorporated into configure.in instead. In
the future, do not change these two files (see the top of
configure.in instead). By the way, this update was required to
get shared libraries working.
./config/linux [REMOVED]
./config/linux-gnulibc1 [NEW]
./config/linux-gnu [NEW]
./config/alpha-dec [REMOVED]
./config/alpha-dec-osf4.0 [REMOVED]
./config/dec-osf4.x [NEW]
./config/irix5.3 [REMOVED]
./config/irix5.x [NEW]
./config/irix64 [REMOVED]
./config/freebsd
Moved config files around to agree with output from the new
config.guess. The linux file was split into gnu (RedHat),
gnulibc1, and gnulibc2 versions. The alpha-dec file was
removed (I think it was unused) and the alpha-dec-osf4.0 was
changed to dec-osf4.x. The irix5.3 file renamed to irix5.x and
the irix64 file was renamed to irix6.x. The freebsd file was
changed to point to linux-gnulibc1. These changes were tested
on:
Linux 2.0
Linux 2.1
FreeBSD 3.2
Irix 5.3
Irix64 6.2
Irix64 6.4
HP/UX 10.20
OSF1 4.0
./config/alphaev56-dec-osf4.x
./config/irix64
Added warnings similar to linux/freebsd about using compilers
with known bugs.
./config/commence.in
./config/conclude.in
./src/Makefile.in
./test/Makefile.in
./testpar/Makefile.in
./tools/Makefile.in
Added definitions for shared libraries. This has been tested
on the following systems:
Linux 2.0
Linux 2.1
FreeBSD 3.2
Irix 5.3
Irix64 6.2
Irix64 6.4
HP/UX 10.20 static only
OSF1 4.0
If you want to disable use of shared libraries (you probably
do for development purposes since it takes a lot longer to
compile and because you have to run dynamically linked
programs in a special way if the library hasn't been
installed) then add `--disable-shared' to the configure
command line. This is all documented in the INSTALL file.
./bin/release
Temprarily commented out the MANIFEST checking when running
under svf since svf is about to be replaced by a newer
version. This change only affects error checking during the
release process.
./Makefile.dist
./Makefile.in
Added `make check' which does the same thing as `make _test'
since the former is endorsed by the GNU coding style and
people are used to it. The old `make _test' still works too
(and so does `make test' if you use GNU make).
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