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* Remove getlogin work-arounds (#2620)Dana Robinson2023-03-231-1/+1
| | | Unused in the library
* Bring bin/ changes from develop (#2595)Dana Robinson2023-03-191-5/+85
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* Update copyright headers. (#2527)Larry Knox2023-03-101-1/+0
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* Hdf5 1 10 merges from dev (#662)Allen Byrne2021-05-251-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * HDFFV-10865 - merge from dev, HDFArray perf fix. * Remove duplicate setting * Whitespace changes after clang format * Undo version 11 clang format changes * Merge CMake changes from develop * test testing script merge from develop * Update supported platforms * PR#3 merge from develop * Merge gcc 10 diagnostics option from develop * Merge #318 OSX changes from develop * Merge small changes from develop * Minor non-space formatting changes * #386 copyright corrections for java folder * Merges from develop #358 patches from vtk #361 fix header guard spelling * Merge updates #358 patches from vtk #361 fix header guard spelling * format fix * Fix missing underscore and make H5public.h closer to dev * Merges from develop #340 clang -Wformat-security warnings #360 Fixed uninitialized warnings header guard underscore cleanup JNI cleanup * format alignment * Add missing test ref file * Merge #380 from develop * Finish java merges from develop * Fix java issues with tests and javadoc * Correct use of attribute access plist * Remove debug code * Remove unused variable * Change file access to read only for java tests * Split clang format operations. * More javadoc comments * Remove pre-split setting * format source * Change windows TS to use older VS. * Mostly all javadoc fixes, one argument rename. * synch file * Merge of long double fix and compiler flags * HDFFV-11229 merge changes from develop * HDFFV-11229 correct test script * HDFFV-11229 update autotools test script for two ref files * HDFFV-11229 merge dev changes for long double display in tools * Committing clang-format changes * minor whitespace * remove unneeded macro * Committing clang-format changes * Add "option" command for clang options * Rework CMake add_custom to use the BYPRODUCTS argument Update pkgconfig scripts for parallel builds. Fix install COPYING file reference. Remove unused round defines. Change CMake default setting of BUILD_CPP to off. * Fortran target depends * Remove incorrect source attribute * Revert define removal * printf specifiers and VS2015 min changes * Committing clang-format changes * Add time struct * TRILAB-227 and tools debug merges from develop * Merge various changes from dev * Issue #669 remove version from pkgcfg filename * remove version from h5cc script Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* Hdf5 1 10 update license url part2 (#404)Larry Knox2021-03-011-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * close #195. (#196) * Update HDF5PluginMacros.cmake * Update HDF5PluginMacros.cmake * Modify temporary rpath for testing in java example scripts. (#230) * Fix undefined left shifting of negative numbers (#338) Undefined Bahavior Sanitizer errored here about left shifting negative numbers. * Update license url (#332) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - src and test directories. * Update license url part2 (#333) * Modify temporary rpath for testing in java example scripts. * Update URL in source file Copyright headers for web copy of COPYING file - files not in src or test. * Update URL in source file Copyright headers for web. Co-authored-by: H. Joe Lee <hyoklee@hdfgroup.org> Co-authored-by: Sean McBride <sean@rogue-research.com>
* Brought the scripts in bin/ in line with develop.Dana Robinson2020-05-181-91/+156
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* Change copyright headers to replace url referring to file to be removedlrknox2017-04-141-6/+4
| | | | | | | | and replace it with new url for COPYING file. Fix 2 lines in java error test expected output file where messages include line numbers changed by reducing the copyright header by 2 lines.
* [svn-r25993] remove last usage of IS_H5FD_MPIO.Mohamad Chaarawi2015-01-211-1/+0
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* [svn-r24864] Description:Quincey Koziol2014-03-211-4/+1
| | | | | | | | | | | | | | | | | | Remove all traces of MPI-POSIX VFD and GPFS detection/code. Remove remaining traces of stream VFD. Remove testpar/t_posix_compliant test (it's not actually verifying anything). Clean up H5D__mpio_opt_possible() further. Moved environment variable that disables MPI collective operations into MPI-IO VFD (instead of it being in src/H5S.c). A few other small code cleanups. Tested on: Mac OSX/64 10.9.2 (amazon) w/parallel & serial
* [svn-r23713] Description:Quincey Koziol2013-05-211-56/+89
| | | | | | | | | | Clean up warnings, switch library code to use Standard C/POSIX wrapper macros, remove internal calls to API routines, update checkapi and checkposix scripts. Tested on: Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN Big-Endian Linux/64 (ostrich)
* [svn-r23313] Description:Quincey Koziol2013-02-251-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring changes from Coverity branch to the trunk: r20612: Changed string functions to versions with string length to fix coverity issues 922, 942 and 943. r20614: Use HDsnprintf. --gh r20675: Fix for coverity #1714 due to the fix for #810. Use HDfree() instead of H5MM_xfree(). r20678: Repaired coverity issue #598 -- failure to check return value from a call to fstat(), or to tidy up in the event of failure. r20679: Use HDstrncpy. --gh r20681: Use HDstrncat and HDstrncpy. --gh Tested on: Mac OSX/64 10.8.2 (amazon) w/Debug, etc. (too minor to require h5committest)
* [svn-r13311] Updated copyright notice.Albert Cheng2007-02-141-2/+3
| | | | | Test: Just visual inspection as these are all comments changes.
* [svn-r6536] Purpose:Bill Wendling2003-03-311-2/+12
| | | | | | | | | | | | Updated Copyright Statement Description: Replaced old copyright statement with new one. Platforms tested: No need. Misc. update:
* [svn-r5132] Purpose:Bill Wendling2002-04-021-0/+7
| | | | | | | | | | | | | | | | | | | Autotools Update Description: I've updated autoconf, automake, and libtool to the latest/greatest versions; 2.53, 1.6, and 1.4.2 resp. Many changes come with the new versions: - ltconfig is no longer used - acconfig.h is no longer used (#define values are declared with the macro) - regeneration of all of the aclocal.m4, configure, and H5config.h.in files. - new config.{guess,sub} files - new ltmain.sh file Platforms tested: AIX (blue), and Linux
* [svn-r673] Changes since 19980908Robb Matzke1998-09-081-2/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./COPYING Reformatted as text instead of C. Removed zlib crew from the list of contributors since no zlib code is actually in the hdf5 library. ./INSTALL ./INSTALL.ascired ./MANIFEST Minor updates for Beta release including version number change. ./INSTALL_MAINT Added information about making a release. ./RELEASE Updated function list based on public header files. ./bin/checkposix Got rid of complaints about some obvious things. ./doc/html/H5.api.html ./doc/html/RM_H5F.html ./src/H5F.c ./src/H5Fpublic.h ./test/tfile.c Changed H5Fget_create_template() and H5Fget_access_template() to H5Fget_create_plist() and H5Fget_access_plist() since that conforms better to lots of other names. ./doc/html/Datatypes.html ./doc/html/ExternalFiles.html ./doc/html/Files.html ./doc/html/H5.api.html ./doc/html/H5.sample_code.html ./doc/html/RM_H5F.html ./doc/html/RM_H5Front.html Changed `template' to `property list', etc. ./doc/html/Ragged.html [NEW] Documentation for ragged arrays. ./src/H5Iprivate.h ./src/H5Ipublic.h ./src/H5I.c Changed the scope of some symbols to be more local. ./src/H5.c ./src/H5AC.c ./src/H5D.c ./src/H5E.c ./src/H5F.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fsec2.c ./src/H5Fsplit.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gnode.c ./src/H5HG.c ./src/H5I.c ./src/H5O.c ./src/H5Ocomp.c ./src/H5Odtype.c ./src/H5Oefl.c ./src/H5Omtime.c ./src/H5Oname.c ./src/H5P.c ./src/H5S.c ./src/H5Shyper.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5V.c ./src/H5Z.c ./src/H5private.h Fixed some violations of our naming scheme by adding HD to the beginning of all Posix functions.
* [svn-r514] Changes since 19980715Robb Matzke1998-07-171-0/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fsplit.c Changed the allocation size request from `size_t' to `hsize_t' because it was overflowing for the `big' test. ./src/H5detect.c If `long double' and `double' are the same size then we define H5T_NATIVE_LDOUBLE to be the same as H5T_NATIVE_DOUBLE. Similarly for `long' vs. `long long' and `unsigned long' vs. `unsigned long long'. ./test/Makefile.in Added `big' to the list of tests to normally run. ./test/big.c Added a check to see if the file system supports holes and if it doesn't then the test is skipped. ./RELEASE Added a couple minor details details about API tracing and symbolic links. ./src/H5public.h Added comments about the use of hbool_t. Fixed a comment spelling error. ./test/testhdf5.h Changed the way the version number is printed. The old method was `hdf5-1.2.3d' and the new method is `hdf5 version 1.2 release 3' ./tools/h5ls.c Only prints the max dimension if it differs from the current dimension or if verbose mode is enabled. Added switches `-?', `-h', and `--help' to print a usage message. Added switches `-v' and `--verbose' to generate more verbose output. Added switches `-V' and `--version' to print the version number and exit. The version number is printed like: This is h5ls version 1.0 release 24' ./bin/h5vers [NEW] This script prints, sets, and/or increments the hdf5 version number. It can be run from the top directory or any of the child directories like src, tools, test, etc. Some examples: $ h5vers # Display current version 1.0.24 $ h5vers -v version 1.0 release 24 # Display current version. $ h5vers -s 5.2.8 # Set version and display 5.2.8 $ h5vers -s 2.1 2.1.0 $ h5vers -s hdf5-1.0.24a.tar.bz2 1.0.24 $ h5vers -s 'version 2.0 release 8' 2.0.8 $ h5vers -s 'junk 22 junk 33 more junk 66 and 99 junk' 33.66.99 $ h5vers -i major # Increment from 1.0.24 2.0.0 $ h5vers -i minor # Increment from 1.0.24 1.1.0 $ h5vers -i release # Increment from 1.0.24 1.0.25 $ h5vers ~/hdf5/src/H5public.h # Use an alternate file 1.0.24 ./bin/checkapi [NEW] Run from the src directory with arguments H5[A-Z]*.c and it will print the locations of each place where an API function was called from within the library. Use it as the compile or grep command under Emacs and you can C-x ` through the list. ./bin/debug-ohdr [NEW] Keeps track of H5O_open() and H5O_close() debugging messages and lists the file addresses of the object headers that are opened but never closed. You must enable the `o' debugging at configuration time and pipe stderr into this script. ./bin/errors Added a note to indicate that this script no longer works because of changes in the HRETURN_ERROR() and HGOTO_ERROR() macros. ./bin/iostats [NEW] Watches output from the Linux strace program and accumulates statistics about low-level access to an hdf5 file. The output is a list of 2d data points which can be plotted by gnuplot to show file seeking behavior. ./MANIFEST Added new files.
* [svn-r204] Changes since 19980129Robb Matzke1998-01-301-2/+2
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./RELEASE Added Library functions that I missed the first time. ./html/Datasets.html Added an example for Elena's question about how to read a single member of a compound data type so it becomes an array of that member in memory. ./src/H5Pprivate.h Fixed the prototype for H5P_get_hyperslab() to match the definition. ./src/H5Psimp.c Oops, added the kludge back in for the offset argument, which is still an `intn' instead of a `size_t'. ./src/H5.c ./src/H5public.h ./src/H5F.c ./src/H5T.c ./src/H5Tpublic.h Changed H5init() to H5open() and added an H5close() to fit our create/open/close paradigm. The H5open() happens automatically on the first call to the HDF5 library. The H5close() happens automatically on exit() (unless the app turns off that feature). H5close() closes all datasets and files and releases all resources used by the library. ./test/dsets.c Added calls to H5open() and H5close() to test them. ./test/dtypes.c Removed call to H5init() since we no longer need it there. ./src/H5Fstdio.c Changed the PABLO_MASK to the right value. Thanks Kim.
* [svn-r60] ./bin/checkposix NEWRobb Matzke1997-09-021-0/+61
Perl script that looks for Posix functions that haven't been protected by adding `HD' to the beginning of the name. It takes a list of .c file names as arguments. ./bin/errors NEW A filter that takes a function prologue and function body as standard input and updates the error list in the prologue based on the function body. You must add the `ERRORS' or `Errors:' field to the prologue before you pass it through this filter or else the errors come out as a separate comment. The errors field must be terminated with a blank line in the prologue so we know where the end is. I may enhance this in the future to take an entire file as standard input instead of individual functions.
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